Strain Fitness in Escherichia fergusonii Becca around EFB2_01695

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,785,221	-				-3.0
1,785,289	+				+0.2
1,785,313	+				+1.1
1,785,313	+				+0.2
1,785,314	-				-1.9
1,785,314	-				-0.3
1,785,314	-				+0.9
1,785,314	-				+0.1
1,785,314	-				+0.2
1,785,323	+				-0.2
1,785,323	+				-0.2
1,785,324	-				+1.5
1,785,324	-				-2.1
1,785,499	+		EFB2_01694	0.19	-2.1
1,785,500	-		EFB2_01694	0.20	+0.6
1,785,500	-		EFB2_01694	0.20	-0.4
1,785,501	+		EFB2_01694	0.20	+2.1
1,785,502	-		EFB2_01694	0.20	-3.3
1,785,526	-		EFB2_01694	0.23	-2.5
1,785,529	+		EFB2_01694	0.24	+0.6
1,785,529	+		EFB2_01694	0.24	+0.8
1,785,546	-		EFB2_01694	0.26	-0.0
1,785,582	+		EFB2_01694	0.31	+0.7
1,785,582	+		EFB2_01694	0.31	-1.4
1,785,582	+		EFB2_01694	0.31	+0.2
1,785,583	-		EFB2_01694	0.31	+1.1
1,785,583	-		EFB2_01694	0.31	+0.1
1,785,583	-		EFB2_01694	0.31	-0.8
1,785,585	+		EFB2_01694	0.32	+0.1
1,785,585	+		EFB2_01694	0.32	+0.4
1,785,585	+		EFB2_01694	0.32	+1.2
1,785,587	+		EFB2_01694	0.32	-2.7
1,785,644	+		EFB2_01694	0.40	-1.2
1,785,645	-		EFB2_01694	0.40	+0.6
1,785,647	+		EFB2_01694	0.41	-2.6
1,785,659	+		EFB2_01694	0.42	-2.4
1,785,666	+		EFB2_01694	0.43	-0.9
1,785,666	+		EFB2_01694	0.43	+0.2
1,785,667	-		EFB2_01694	0.43	+0.1
1,785,667	-		EFB2_01694	0.43	+1.3
1,785,731	+		EFB2_01694	0.53	+0.7
1,785,815	+		EFB2_01694	0.65	+0.8
1,785,874	+		EFB2_01694	0.73	-1.8
1,785,875	-		EFB2_01694	0.73	-1.9
1,785,940	+		EFB2_01694	0.83	+1.6
1,785,940	+		EFB2_01694	0.83	+0.1
1,785,940	+		EFB2_01694	0.83	+1.8
1,785,940	+		EFB2_01694	0.83	-2.1
1,785,940	+		EFB2_01694	0.83	+0.5
1,785,940	+		EFB2_01694	0.83	-2.7
1,785,941	-		EFB2_01694	0.83	+0.6
1,785,941	-		EFB2_01694	0.83	-1.8
1,785,941	-		EFB2_01694	0.83	-2.6
1,785,941	-		EFB2_01694	0.83	-0.1
1,786,004	+				+1.2
1,786,043	+				-1.3
1,786,090	-				+2.0
1,786,093	+				+0.7
1,786,094	-				+0.6
1,786,099	-				+0.8
1,786,099	-				+0.1
1,786,099	-				-0.1
1,786,102	+				-1.2
1,786,102	+				-1.5
1,786,102	+				-1.8
1,786,103	-				-2.4
1,786,103	-				-0.2
1,786,103	-				-0.2
1,786,103	-				-0.5
1,786,103	-				+1.6
1,786,103	-				-0.9
1,786,103	-				-0.6
1,786,103	-				-3.0
1,786,103	-				+0.2
1,786,103	-				-0.5
1,786,114	-				-1.6
1,786,185	+				-2.3
1,786,241	+				+0.7
1,786,241	+				-3.3
1,786,242	-				+3.4
1,786,247	+				-1.4
1,786,247	+				-1.9
1,786,247	+				+0.8
1,786,247	+				+0.4
1,786,247	+				-1.9
1,786,247	+				-2.3
1,786,247	+				+0.6
1,786,248	-				-1.8
1,786,248	-				-0.1
1,786,248	-				+0.8
1,786,248	-				-0.3
1,786,248	-				+2.0
1,786,249	+				-1.5
1,786,285	+				+0.6
1,786,289	+		EFB2_01695	0.10	+2.4
1,786,289	+		EFB2_01695	0.10	-1.1
1,786,323	-		EFB2_01695	0.14	+0.1
1,786,334	+		EFB2_01695	0.15	-0.3
1,786,430	+		EFB2_01695	0.25	+0.2
1,786,431	-		EFB2_01695	0.25	+0.1
1,786,431	-		EFB2_01695	0.25	-2.6
1,786,431	-		EFB2_01695	0.25	-0.4
1,786,431	-		EFB2_01695	0.25	-2.9
1,786,509	+		EFB2_01695	0.34	-0.4
1,786,509	+		EFB2_01695	0.34	-2.8
1,786,509	+		EFB2_01695	0.34	+0.4
1,786,509	+		EFB2_01695	0.34	+0.5
1,786,509	+		EFB2_01695	0.34	-2.2
1,786,509	+		EFB2_01695	0.34	+1.0
1,786,509	+		EFB2_01695	0.34	-0.5
1,786,510	-		EFB2_01695	0.34	+0.4
1,786,510	-		EFB2_01695	0.34	+0.5
1,786,510	-		EFB2_01695	0.34	-0.1
1,786,510	-		EFB2_01695	0.34	-1.8
1,786,510	-		EFB2_01695	0.34	+2.9
1,786,510	-		EFB2_01695	0.34	+0.6
1,786,510	-		EFB2_01695	0.34	-1.4
1,786,510	-		EFB2_01695	0.34	+2.3
1,786,510	-		EFB2_01695	0.34	-0.3
1,786,510	-		EFB2_01695	0.34	-2.0
1,786,511	+		EFB2_01695	0.34	+1.1
1,786,511	+		EFB2_01695	0.34	+0.1
1,786,511	+		EFB2_01695	0.34	-2.8
1,786,511	+		EFB2_01695	0.34	-1.4
1,786,512	-		EFB2_01695	0.34	+0.7
1,786,512	-		EFB2_01695	0.34	+1.7
1,786,512	-		EFB2_01695	0.34	-1.8
1,786,512	-		EFB2_01695	0.34	-0.6
1,786,512	-		EFB2_01695	0.34	-0.2
1,786,526	+		EFB2_01695	0.36	-1.9
1,786,544	+		EFB2_01695	0.37	-1.6
1,786,595	+		EFB2_01695	0.43	+0.9
1,786,595	+		EFB2_01695	0.43	-0.9
1,786,595	+		EFB2_01695	0.43	-0.7
1,786,595	+		EFB2_01695	0.43	-1.5
1,786,595	+		EFB2_01695	0.43	+0.1
1,786,595	+		EFB2_01695	0.43	-2.4
1,786,595	+		EFB2_01695	0.43	-1.3
1,786,595	+		EFB2_01695	0.43	-0.3
1,786,596	-		EFB2_01695	0.43	+0.2
1,786,596	-		EFB2_01695	0.43	-1.1
1,786,596	-		EFB2_01695	0.43	+0.1
1,786,650	+		EFB2_01695	0.49	+1.4
1,786,650	+		EFB2_01695	0.49	-3.0
1,786,650	+		EFB2_01695	0.49	-2.3
1,786,651	-		EFB2_01695	0.49	-0.5
1,786,651	-		EFB2_01695	0.49	-2.0
1,786,651	-		EFB2_01695	0.49	-0.4
1,786,651	-		EFB2_01695	0.49	-1.6
1,786,651	-		EFB2_01695	0.49	-1.8
1,786,651	-		EFB2_01695	0.49	+1.4
1,786,651	-		EFB2_01695	0.49	+1.4
1,786,651	-		EFB2_01695	0.49	+1.2
1,786,656	-		EFB2_01695	0.49	-1.0
1,786,741	+		EFB2_01695	0.58	+1.9
1,786,742	-		EFB2_01695	0.58	-0.8
1,786,742	-		EFB2_01695	0.58	+1.9
1,786,763	+		EFB2_01695	0.61	+0.8
1,786,763	+		EFB2_01695	0.61	+0.8
1,786,764	-		EFB2_01695	0.61	+0.9
1,786,927	-		EFB2_01695	0.78	-2.4
1,786,935	-		EFB2_01695	0.79	+1.5
1,786,949	+		EFB2_01695	0.80	-3.2
1,786,949	+		EFB2_01695	0.80	-1.7
1,786,949	+		EFB2_01695	0.80	-3.2
1,786,950	-		EFB2_01695	0.81	+1.5
1,786,950	-		EFB2_01695	0.81	+1.6
1,786,950	-		EFB2_01695	0.81	-1.9
1,786,965	+		EFB2_01695	0.82	+1.2
1,786,965	+		EFB2_01695	0.82	-0.2
1,786,965	+		EFB2_01695	0.82	-1.5
1,786,965	+		EFB2_01695	0.82	+1.1
1,786,965	+		EFB2_01695	0.82	+0.4
1,786,965	+		EFB2_01695	0.82	-0.4
1,786,966	-		EFB2_01695	0.82	+1.1
1,786,966	-		EFB2_01695	0.82	+1.1
1,786,966	-		EFB2_01695	0.82	-0.0
1,786,966	-		EFB2_01695	0.82	-0.5
1,786,998	+		EFB2_01695	0.86	-2.9
1,786,998	+		EFB2_01695	0.86	-0.5
1,787,006	+		EFB2_01695	0.87	-1.0
1,787,066	+				+1.2
1,787,066	+				-0.8
1,787,092	+				-0.6
1,787,093	-				+1.1
1,787,093	-				+0.4
1,787,107	+				-2.2
1,787,115	+				-0.6
1,787,115	+				-2.5
1,787,116	-				+0.9
1,787,119	+				-1.9
1,787,119	+				-0.0
1,787,119	+				+1.1
1,787,119	+				-1.5
1,787,119	+				+0.0
1,787,119	+				-0.8
1,787,119	+				-1.4
1,787,120	-				-0.2
1,787,120	-				+1.3
1,787,120	-				+0.8
1,787,120	-				+0.7
1,787,120	-				-0.5
1,787,120	-				-0.5
1,787,130	+				+0.2
1,787,130	+				+0.6
1,787,130	+				-0.3
1,787,130	+				+1.2
1,787,130	+				-0.3
1,787,130	+				+0.2
1,787,131	-				-1.1
1,787,131	-				+0.6
1,787,131	-				+0.0
1,787,131	-				-1.4
1,787,131	-				-2.3
1,787,140	+				+1.3
1,787,140	+				-0.9
1,787,140	+				-2.2
1,787,141	-				+0.6
1,787,179	-				-0.9
1,787,179	-				+0.6
1,787,182	+				+1.1
1,787,182	+				+1.5
1,787,182	+				+1.3
1,787,182	+				+0.0
1,787,182	+				-0.8
1,787,182	+				+1.2
1,787,182	+				+1.2
1,787,182	+				-1.6
1,787,183	-				+1.0
1,787,183	-				+2.5
1,787,183	-				+2.1
1,787,183	-				+1.1
1,787,224	+				+0.7
1,787,224	+				-0.4
1,787,224	+				-1.1
1,787,224	+				-1.8
1,787,224	+				-2.3
1,787,225	-				-1.2
1,787,225	-				-3.0
1,787,225	-				-0.9
1,787,225	-				+1.1
1,787,225	-				+0.3
1,787,227	+				-0.7
1,787,227	+				-0.4
1,787,227	+				+0.2
1,787,227	+				-0.9
1,787,227	+				+0.9
1,787,227	+				+1.4
1,787,227	+				-0.1
1,787,227	+				-0.5
1,787,227	+				-0.3
1,787,227	+				+2.0
1,787,227	+				+1.5
1,787,227	+				+0.6
1,787,227	+				-2.3
1,787,228	-				-2.1
1,787,228	-				+0.6
1,787,228	-				+3.5
1,787,228	-				+2.2
1,787,228	-				-1.5
1,787,228	-				-1.4
1,787,228	-				-2.7
1,787,228	-				+1.5
1,787,231	+				-0.1
1,787,231	+				+0.5
1,787,231	+				+0.3
1,787,231	+				+0.5
1,787,231	+				+0.5
1,787,231	+				+0.4
1,787,231	+				-0.6
1,787,231	+				+0.9
1,787,231	+				-0.3
1,787,231	+				-0.1
1,787,231	+				+0.6
1,787,231	+				-1.2
1,787,231	+				-0.7
1,787,231	+				+1.5
1,787,231	+				+0.4
1,787,231	+				-3.0
1,787,231	+				-0.6
1,787,232	-				-1.4
1,787,232	-				-0.8
1,787,232	-				+0.7
1,787,232	-				-2.7
1,787,232	-				+0.2
1,787,232	-				-0.0
1,787,232	-				+0.1
1,787,232	-				-0.1
1,787,232	-				-0.2
1,787,232	-				+0.9
1,787,232	-				+0.8
1,787,232	-				-0.5
1,787,232	-				+2.4
1,787,232	-				-0.0
1,787,266	+				+0.1
1,787,266	+				+1.6
1,787,266	+				-4.1
1,787,266	+				-1.7
1,787,266	+				-1.8
1,787,266	+				-0.6
1,787,266	+				-1.4
1,787,266	+				-0.2
1,787,267	-				+0.1
1,787,267	-				-1.9
1,787,269	+				-2.4
1,787,270	-				+0.9
1,787,270	-				+0.4
1,787,276	+				+0.9
1,787,277	-				+2.1
1,787,311	+				-0.0
1,787,311	+				+0.1
1,787,311	+				+1.0
1,787,311	+				+0.8
1,787,311	+				+0.1
1,787,311	+				-0.7
1,787,311	+				+0.5
1,787,311	+				+0.2
1,787,311	+				+1.3
1,787,311	+				-0.8
1,787,312	-				-0.3
1,787,312	-				-1.4
1,787,312	-				-0.9
1,787,312	-				+0.2
1,787,312	-				-1.1
1,787,314	+				+1.9
1,787,314	+				+0.3
1,787,314	+				-2.3
1,787,314	+				-0.3
1,787,314	+				-0.7
1,787,314	+				+3.2
1,787,315	-				-0.3
1,787,315	-				-1.4
1,787,315	-				+0.9
1,787,315	-				-0.6
1,787,315	-				+1.7
1,787,315	-				+1.3
1,787,315	-				+1.3
1,787,337	+				+0.8
1,787,338	-				-0.0
1,787,338	-				-2.3
1,787,343	-				+1.7
1,787,343	-				-2.6
1,787,354	+				-1.8
1,787,354	+				+1.1
1,787,355	-				-0.5
1,787,401	+				-2.2
1,787,401	+				-0.5
1,787,402	-				-1.3
1,787,402	-				+0.2
1,787,402	-				-0.8
1,787,444	+				+2.1
1,787,445	-				+0.1
1,787,454	+				-0.3
1,787,454	+				-2.4
1,787,454	+				-1.5
1,787,454	+				-0.9
1,787,455	-				+0.0
1,787,521	+		EFB2_01696	0.11	+0.6
1,787,522	-		EFB2_01696	0.11	-2.5
1,787,522	-		EFB2_01696	0.11	+1.0
1,787,537	+		EFB2_01696	0.13	-1.1
1,787,537	+		EFB2_01696	0.13	-1.4
1,787,537	+		EFB2_01696	0.13	+0.8
1,787,537	+		EFB2_01696	0.13	-0.0
1,787,537	+		EFB2_01696	0.13	-1.5
1,787,537	+		EFB2_01696	0.13	-0.3
1,787,537	+		EFB2_01696	0.13	+0.9
1,787,537	+		EFB2_01696	0.13	+1.6
1,787,537	+		EFB2_01696	0.13	-1.4
1,787,537	+		EFB2_01696	0.13	+1.6
1,787,537	+		EFB2_01696	0.13	+0.2
1,787,537	+		EFB2_01696	0.13	-1.3
1,787,537	+		EFB2_01696	0.13	-1.4
1,787,537	+		EFB2_01696	0.13	+1.1
1,787,538	-		EFB2_01696	0.13	+0.6
1,787,538	-		EFB2_01696	0.13	+0.9
1,787,538	-		EFB2_01696	0.13	+1.1
1,787,538	-		EFB2_01696	0.13	+3.8
1,787,538	-		EFB2_01696	0.13	-0.0
1,787,538	-		EFB2_01696	0.13	-0.8
1,787,538	-		EFB2_01696	0.13	+0.9
1,787,538	-		EFB2_01696	0.13	-2.0
1,787,538	-		EFB2_01696	0.13	-1.9
1,787,538	-		EFB2_01696	0.13	+0.0
1,787,538	-		EFB2_01696	0.13	+1.2
1,787,538	-		EFB2_01696	0.13	+2.1
1,787,538	-		EFB2_01696	0.13	+0.9
1,787,538	-		EFB2_01696	0.13	-1.4
1,787,538	-		EFB2_01696	0.13	-1.2
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