Strain Fitness in Escherichia fergusonii Becca around EFB2_01348

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,396,863	+		EFB2_01347	0.73	-0.2
1,396,863	+		EFB2_01347	0.73	+0.1
1,396,863	+		EFB2_01347	0.73	-3.0
1,396,864	-		EFB2_01347	0.73	+0.0
1,396,864	-		EFB2_01347	0.73	+1.0
1,396,881	+		EFB2_01347	0.73	+2.4
1,396,882	-		EFB2_01347	0.73	+0.0
1,396,882	-		EFB2_01347	0.73	-1.1
1,396,889	+		EFB2_01347	0.73	-0.9
1,396,889	+		EFB2_01347	0.73	-1.7
1,396,890	-		EFB2_01347	0.73	-0.1
1,396,896	+		EFB2_01347	0.74	-0.4
1,396,896	+		EFB2_01347	0.74	-0.1
1,396,896	+		EFB2_01347	0.74	-1.0
1,396,897	-		EFB2_01347	0.74	+1.5
1,396,949	+		EFB2_01347	0.75	+0.6
1,396,949	+		EFB2_01347	0.75	-2.5
1,396,949	+		EFB2_01347	0.75	+0.0
1,396,949	+		EFB2_01347	0.75	+1.1
1,396,949	+		EFB2_01347	0.75	-1.0
1,396,949	+		EFB2_01347	0.75	-1.2
1,396,950	-		EFB2_01347	0.75	-0.4
1,396,950	-		EFB2_01347	0.75	+0.4
1,396,950	-		EFB2_01347	0.75	+5.6
1,396,950	-		EFB2_01347	0.75	+0.3
1,396,950	-		EFB2_01347	0.75	-0.1
1,396,954	+		EFB2_01347	0.75	-1.2
1,396,955	-		EFB2_01347	0.75	-0.4
1,396,955	-		EFB2_01347	0.75	-0.8
1,396,998	-		EFB2_01347	0.77	-1.8
1,397,063	+		EFB2_01347	0.79	-1.8
1,397,064	-		EFB2_01347	0.79	+1.6
1,397,064	-		EFB2_01347	0.79	+1.8
1,397,064	-		EFB2_01347	0.79	-0.8
1,397,064	-		EFB2_01347	0.79	-0.5
1,397,064	-		EFB2_01347	0.79	+1.4
1,397,150	+		EFB2_01347	0.81	-2.1
1,397,151	-		EFB2_01347	0.81	-2.6
1,397,151	-		EFB2_01347	0.81	+0.1
1,397,151	-		EFB2_01347	0.81	+0.4
1,397,164	+		EFB2_01347	0.82	-1.9
1,397,164	+		EFB2_01347	0.82	-2.0
1,397,164	+		EFB2_01347	0.82	-0.5
1,397,167	+		EFB2_01347	0.82	-1.4
1,397,167	+		EFB2_01347	0.82	-1.4
1,397,167	+		EFB2_01347	0.82	-0.2
1,397,167	+		EFB2_01347	0.82	-1.4
1,397,168	-		EFB2_01347	0.82	+0.4
1,397,266	+		EFB2_01347	0.85	+1.8
1,397,308	+		EFB2_01347	0.86	-0.7
1,397,308	+		EFB2_01347	0.86	-0.4
1,397,308	+		EFB2_01347	0.86	-1.5
1,397,308	+		EFB2_01347	0.86	+0.6
1,397,309	-		EFB2_01347	0.86	+0.0
1,397,309	-		EFB2_01347	0.86	+0.8
1,397,309	-		EFB2_01347	0.86	+0.7
1,397,309	-		EFB2_01347	0.86	+1.0
1,397,309	-		EFB2_01347	0.86	+1.2
1,397,309	-		EFB2_01347	0.86	+0.9
1,397,353	+		EFB2_01347	0.88	+0.8
1,397,353	+		EFB2_01347	0.88	-0.5
1,397,353	+		EFB2_01347	0.88	-0.4
1,397,353	+		EFB2_01347	0.88	+1.6
1,397,353	+		EFB2_01347	0.88	-1.3
1,397,353	+		EFB2_01347	0.88	-0.5
1,397,353	+		EFB2_01347	0.88	-0.9
1,397,353	+		EFB2_01347	0.88	-2.4
1,397,354	-		EFB2_01347	0.88	-1.4
1,397,354	-		EFB2_01347	0.88	+1.5
1,397,354	-		EFB2_01347	0.88	+0.6
1,397,354	-		EFB2_01347	0.88	+1.1
1,397,354	-		EFB2_01347	0.88	-1.1
1,397,354	-		EFB2_01347	0.88	+1.6
1,397,354	-		EFB2_01347	0.88	-1.7
1,397,354	-		EFB2_01347	0.88	-0.7
1,397,384	+		EFB2_01347	0.88	-0.5
1,397,384	+		EFB2_01347	0.88	+1.7
1,397,397	+		EFB2_01347	0.89	-2.0
1,397,397	+		EFB2_01347	0.89	+0.6
1,397,397	+		EFB2_01347	0.89	+0.5
1,397,397	+		EFB2_01347	0.89	+0.7
1,397,397	+		EFB2_01347	0.89	+0.5
1,397,397	+		EFB2_01347	0.89	-3.6
1,397,398	-		EFB2_01347	0.89	-0.4
1,397,398	-		EFB2_01347	0.89	-1.7
1,397,398	-		EFB2_01347	0.89	-0.9
1,397,398	-		EFB2_01347	0.89	+0.1
1,397,398	-		EFB2_01347	0.89	+0.4
1,397,398	-		EFB2_01347	0.89	-1.9
1,397,400	+		EFB2_01347	0.89	+1.2
1,397,400	+		EFB2_01347	0.89	-1.0
1,397,400	+		EFB2_01347	0.89	+0.5
1,397,401	-		EFB2_01347	0.89	-0.6
1,397,401	-		EFB2_01347	0.89	-2.2
1,397,401	-		EFB2_01347	0.89	+1.3
1,397,401	-		EFB2_01347	0.89	+0.2
1,397,401	-		EFB2_01347	0.89	+0.9
1,397,401	-		EFB2_01347	0.89	+1.4
1,397,401	-		EFB2_01347	0.89	+2.1
1,397,421	+		EFB2_01347	0.90	-2.5
1,397,421	+		EFB2_01347	0.90	+1.5
1,397,421	+		EFB2_01347	0.90	+1.3
1,397,421	+		EFB2_01347	0.90	-2.1
1,397,421	+		EFB2_01347	0.90	-0.7
1,397,421	+		EFB2_01347	0.90	+3.1
1,397,421	+		EFB2_01347	0.90	-1.7
1,397,421	+		EFB2_01347	0.90	-1.4
1,397,422	-		EFB2_01347	0.90	-1.7
1,397,422	-		EFB2_01347	0.90	-0.2
1,397,422	-		EFB2_01347	0.90	-0.7
1,397,422	-		EFB2_01347	0.90	-1.8
1,397,487	-				-1.4
1,397,577	+				+0.2
1,397,577	+				-2.0
1,397,577	+				+1.6
1,397,577	+				+1.2
1,397,578	-				+1.8
1,397,578	-				-2.5
1,397,578	-				+0.2
1,397,578	-				-1.1
1,397,578	-				+0.4
1,397,578	-				+0.6
1,397,578	-				-1.0
1,397,578	-				-2.7
1,397,578	-				+1.0
1,397,579	+				-0.0
1,397,587	+				+0.7
1,397,587	+				-2.3
1,397,588	-				+0.6
1,397,588	-				+0.3
1,397,600	+				+0.0
1,397,600	+				-1.0
1,397,601	-				+1.0
1,397,661	+				-2.2
1,397,661	+				-1.1
1,397,661	+				-0.1
1,397,661	+				+1.0
1,397,662	-				-2.1
1,397,662	-				-0.2
1,397,662	-				+1.7
1,397,662	-				+0.7
1,397,719	+				+0.5
1,397,747	+				+0.2
1,397,751	+				+0.1
1,397,751	+				-1.1
1,397,751	+				-0.8
1,397,751	+				+0.2
1,397,751	+				-2.5
1,397,751	+				+0.0
1,397,751	+				-2.1
1,397,752	-				+1.3
1,397,752	-				-3.1
1,397,752	-				+1.5
1,397,752	-				+0.3
1,397,752	-				-0.6
1,397,752	-				-0.4
1,397,752	-				-1.7
1,397,767	+				-1.5
1,397,767	+				-2.3
1,397,768	-				-1.4
1,397,776	+				+2.7
1,397,776	+				+0.7
1,397,780	-				+0.8
1,397,780	-				-0.3
1,397,814	+				+1.3
1,397,815	-				+1.3
1,397,823	+				-0.9
1,397,824	-				+1.4
1,397,824	-				+0.3
1,397,859	-				+0.3
1,397,859	-				+2.8
1,397,890	+				-0.0
1,397,893	+				+0.1
1,397,897	-				+0.7
1,397,903	+				+1.0
1,397,923	+				+0.3
1,397,924	-				+0.9
1,397,924	-				-0.1
1,397,943	-				+0.7
1,397,954	+				+0.2
1,397,955	-				+1.0
1,397,965	+		EFB2_01348	0.11	-0.1
1,397,965	+		EFB2_01348	0.11	-1.4
1,397,966	-		EFB2_01348	0.11	-0.4
1,397,966	-		EFB2_01348	0.11	-0.1
1,397,967	+		EFB2_01348	0.11	-1.5
1,397,967	+		EFB2_01348	0.11	+1.3
1,397,967	+		EFB2_01348	0.11	+1.2
1,397,967	+		EFB2_01348	0.11	+1.9
1,397,967	+		EFB2_01348	0.11	+1.8
1,397,967	+		EFB2_01348	0.11	+2.0
1,397,967	+		EFB2_01348	0.11	+1.9
1,397,968	-		EFB2_01348	0.11	+0.3
1,397,968	-		EFB2_01348	0.11	-0.8
1,397,968	-		EFB2_01348	0.11	-1.1
1,397,968	-		EFB2_01348	0.11	-2.1
1,397,968	-		EFB2_01348	0.11	+1.6
1,397,968	-		EFB2_01348	0.11	+0.6
1,397,986	-		EFB2_01348	0.13	-1.2
1,397,986	-		EFB2_01348	0.13	+0.0
1,397,988	+		EFB2_01348	0.13	-0.2
1,397,988	+		EFB2_01348	0.13	-1.8
1,397,989	-		EFB2_01348	0.13	+0.4
1,398,037	+		EFB2_01348	0.18	-0.1
1,398,044	-		EFB2_01348	0.19	+1.2
1,398,044	-		EFB2_01348	0.19	-0.3
1,398,044	-		EFB2_01348	0.19	+0.9
1,398,044	-		EFB2_01348	0.19	-1.2
1,398,049	+		EFB2_01348	0.19	+0.5
1,398,050	-		EFB2_01348	0.19	-2.1
1,398,050	-		EFB2_01348	0.19	+0.2
1,398,050	-		EFB2_01348	0.19	-0.4
1,398,050	-		EFB2_01348	0.19	-0.3
1,398,059	+		EFB2_01348	0.20	+0.8
1,398,060	-		EFB2_01348	0.20	+0.3
1,398,060	-		EFB2_01348	0.20	-0.6
1,398,073	+		EFB2_01348	0.22	-1.5
1,398,075	-		EFB2_01348	0.22	+2.1
1,398,090	-		EFB2_01348	0.23	+0.2
1,398,116	+		EFB2_01348	0.26	-0.2
1,398,117	-		EFB2_01348	0.26	-3.0
1,398,131	+		EFB2_01348	0.28	-2.1
1,398,131	+		EFB2_01348	0.28	-2.2
1,398,131	+		EFB2_01348	0.28	-2.9
1,398,132	-		EFB2_01348	0.28	+1.2
1,398,132	-		EFB2_01348	0.28	-1.3
1,398,132	-		EFB2_01348	0.28	+3.0
1,398,132	-		EFB2_01348	0.28	-1.6
1,398,211	-		EFB2_01348	0.36	-0.7
1,398,221	+		EFB2_01348	0.37	-1.2
1,398,221	+		EFB2_01348	0.37	-1.6
1,398,221	+		EFB2_01348	0.37	+1.8
1,398,222	-		EFB2_01348	0.37	+0.8
1,398,222	-		EFB2_01348	0.37	-0.3
1,398,222	-		EFB2_01348	0.37	-1.5
1,398,225	-		EFB2_01348	0.37	-2.4
1,398,225	-		EFB2_01348	0.37	-0.8
1,398,242	+		EFB2_01348	0.39	-2.3
1,398,243	-		EFB2_01348	0.39	-2.4
1,398,243	-		EFB2_01348	0.39	-0.4
1,398,243	-		EFB2_01348	0.39	+0.2
1,398,246	+		EFB2_01348	0.39	+0.3
1,398,246	+		EFB2_01348	0.39	+1.8
1,398,246	+		EFB2_01348	0.39	+0.0
1,398,246	+		EFB2_01348	0.39	-0.4
1,398,247	-		EFB2_01348	0.39	+1.8
1,398,247	-		EFB2_01348	0.39	-0.4
1,398,247	-		EFB2_01348	0.39	+1.0
1,398,247	-		EFB2_01348	0.39	-1.0
1,398,258	+		EFB2_01348	0.41	-2.4
1,398,395	+		EFB2_01348	0.54	-0.8
1,398,395	+		EFB2_01348	0.54	-0.2
1,398,396	-		EFB2_01348	0.55	+0.8
1,398,396	-		EFB2_01348	0.55	+0.4
1,398,413	-		EFB2_01348	0.56	-0.0
1,398,415	+		EFB2_01348	0.57	+1.2
1,398,416	-		EFB2_01348	0.57	-1.0
1,398,416	-		EFB2_01348	0.57	-1.1
1,398,449	+		EFB2_01348	0.60	-1.7
1,398,473	+		EFB2_01348	0.62	+3.0
1,398,474	-		EFB2_01348	0.62	+2.3
1,398,531	-		EFB2_01348	0.68	+1.4
1,398,566	-		EFB2_01348	0.72	-0.5
1,398,574	+		EFB2_01348	0.73	+0.7
1,398,574	+		EFB2_01348	0.73	+0.3
1,398,578	+		EFB2_01348	0.73	-1.0
1,398,578	+		EFB2_01348	0.73	+1.3
1,398,579	-		EFB2_01348	0.73	+1.3
1,398,579	-		EFB2_01348	0.73	-0.2
1,398,579	-		EFB2_01348	0.73	-0.0
1,398,579	-		EFB2_01348	0.73	-1.4
1,398,620	+		EFB2_01348	0.77	-0.5
1,398,620	+		EFB2_01348	0.77	+0.9
1,398,620	+		EFB2_01348	0.77	+0.9
1,398,620	+		EFB2_01348	0.77	-0.7
1,398,621	-		EFB2_01348	0.77	+2.8
1,398,680	+		EFB2_01348	0.83	+0.1
1,398,680	+		EFB2_01348	0.83	-0.3
1,398,680	+		EFB2_01348	0.83	-1.9
1,398,681	-		EFB2_01348	0.84	-0.7
1,398,714	-		EFB2_01348	0.87	-0.4
1,398,737	+		EFB2_01348	0.89	-0.1
1,398,738	-		EFB2_01348	0.89	-0.9
1,398,783	+				-1.1
1,398,783	+				-0.0
1,398,783	+				+0.3
1,398,783	+				+0.6
1,398,783	+				-0.0
1,398,783	+				+0.1
1,398,784	-				-2.1
1,398,784	-				-0.2
1,398,784	-				+0.0
1,398,784	-				-2.7
1,398,785	+				-0.1
1,398,785	+				-0.6
1,398,785	+				+0.3
1,398,785	+				+1.2
1,398,786	-				-1.9
1,398,804	-				-0.1
1,398,840	+				+0.7
1,398,840	+				-0.2
1,398,864	+				+0.6
1,398,864	+				-0.3
1,398,864	+				+0.9
1,398,864	+				-2.8
1,398,864	+				-2.6
1,398,864	+				+2.3
1,398,864	+				+0.2
1,398,864	+				-3.8
1,398,865	-				+0.2
1,398,865	-				-2.0
1,398,865	-				+0.2
1,398,865	-				+0.5
1,398,865	-				+0.1
1,398,865	-				+1.1
1,398,865	-				-1.1
1,398,915	+				-0.9
1,398,915	+				-0.5
1,398,916	-				+1.2
1,398,916	-				-0.2
1,398,916	-				+0.2
1,398,966	+				+4.4
1,398,966	+				-0.1
1,398,966	+				+0.8
1,398,967	-				-0.9
1,398,967	-				-0.4
1,398,967	-				-1.0
1,399,062	+		EFB2_01349	0.13	+0.1
1,399,062	+		EFB2_01349	0.13	-0.7
1,399,063	-		EFB2_01349	0.13	-0.9
1,399,101	+		EFB2_01349	0.16	+1.8
1,399,101	+		EFB2_01349	0.16	-0.1
1,399,101	+		EFB2_01349	0.16	+1.6
1,399,101	+		EFB2_01349	0.16	+1.1
1,399,102	-		EFB2_01349	0.16	+1.0
1,399,102	-		EFB2_01349	0.16	-1.1
1,399,102	-		EFB2_01349	0.16	+2.0
1,399,102	-		EFB2_01349	0.16	+0.7
1,399,102	-		EFB2_01349	0.16	+0.7
1,399,102	-		EFB2_01349	0.16	+0.4
1,399,154	+		EFB2_01349	0.19	-1.0
1,399,154	+		EFB2_01349	0.19	+1.1
1,399,154	+		EFB2_01349	0.19	-1.0
1,399,154	+		EFB2_01349	0.19	+1.2
1,399,154	+		EFB2_01349	0.19	+1.6
1,399,154	+		EFB2_01349	0.19	+3.5
1,399,155	-		EFB2_01349	0.19	-0.0
1,399,155	-		EFB2_01349	0.19	+0.9
1,399,155	-		EFB2_01349	0.19	-1.7
1,399,155	-		EFB2_01349	0.19	-0.6
1,399,155	-		EFB2_01349	0.19	-0.2
1,399,155	-		EFB2_01349	0.19	-1.6
1,399,155	-		EFB2_01349	0.19	+2.1
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