Strain Fitness in Escherichia fergusonii Becca around EFB2_00581

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_00580 and EFB2_00581 are separated by 65 nucleotidesEFB2_00581 and EFB2_00582 overlap by 1 nucleotidesEFB2_00582 and EFB2_00583 are separated by 8 nucleotides EFB2_00580: EFB2_00580 - Cell shape-determining protein MreB, at 585,295 to 586,338 _00580 EFB2_00581: EFB2_00581 - Cell shape-determining protein MreC, at 586,404 to 587,507 _00581 EFB2_00582: EFB2_00582 - Rod shape-determining protein MreD, at 587,507 to 587,995 _00582 EFB2_00583: EFB2_00583 - dTTP/UTP pyrophosphatase, at 588,004 to 588,597 _00583 Position (kb) 586 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 586.336 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.398 kb on + strandat 586.403 kb on + strandat 587.149 kb on - strand, within EFB2_00581at 587.965 kb on + strandat 587.965 kb on + strandat 587.993 kb on + strandat 587.993 kb on + strandat 587.993 kb on + strandat 587.993 kb on + strandat 587.993 kb on + strandat 587.994 kb on - strandat 588.003 kb on + strandat 588.003 kb on + strandat 588.003 kb on + strandat 588.003 kb on + strandat 588.003 kb on + strandat 588.004 kb on - strandat 588.004 kb on - strandat 588.016 kb on + strandat 588.016 kb on + strandat 588.016 kb on + strandat 588.016 kb on + strandat 588.016 kb on + strandat 588.016 kb on + strandat 588.017 kb on - strandat 588.020 kb on + strandat 588.020 kb on + strandat 588.020 kb on + strandat 588.020 kb on + strandat 588.020 kb on + strandat 588.020 kb on + strandat 588.020 kb on + strandat 588.021 kb on - strandat 588.021 kb on - strandat 588.021 kb on - strandat 588.050 kb on + strandat 588.050 kb on + strandat 588.050 kb on + strandat 588.050 kb on + strandat 588.051 kb on - strandat 588.051 kb on - strandat 588.051 kb on - strandat 588.081 kb on + strand, within EFB2_00583at 588.081 kb on + strand, within EFB2_00583at 588.081 kb on + strand, within EFB2_00583at 588.081 kb on + strand, within EFB2_00583at 588.081 kb on + strand, within EFB2_00583at 588.081 kb on + strand, within EFB2_00583at 588.081 kb on + strand, within EFB2_00583at 588.081 kb on + strand, within EFB2_00583at 588.081 kb on + strand, within EFB2_00583at 588.081 kb on + strand, within EFB2_00583at 588.082 kb on - strand, within EFB2_00583at 588.082 kb on - strand, within EFB2_00583at 588.082 kb on - strand, within EFB2_00583at 588.082 kb on - strand, within EFB2_00583at 588.082 kb on - strand, within EFB2_00583at 588.082 kb on - strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.133 kb on + strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.134 kb on - strand, within EFB2_00583at 588.213 kb on + strand, within EFB2_00583at 588.214 kb on - strand, within EFB2_00583at 588.216 kb on + strand, within EFB2_00583at 588.216 kb on + strand, within EFB2_00583at 588.216 kb on + strand, within EFB2_00583at 588.216 kb on + strand, within EFB2_00583at 588.216 kb on + strand, within EFB2_00583at 588.216 kb on + strand, within EFB2_00583at 588.217 kb on - strand, within EFB2_00583at 588.217 kb on - strand, within EFB2_00583at 588.217 kb on - strand, within EFB2_00583at 588.217 kb on - strand, within EFB2_00583at 588.290 kb on + strand, within EFB2_00583at 588.412 kb on + strand, within EFB2_00583at 588.412 kb on + strand, within EFB2_00583at 588.412 kb on + strand, within EFB2_00583at 588.412 kb on + strand, within EFB2_00583at 588.412 kb on + strand, within EFB2_00583at 588.412 kb on + strand, within EFB2_00583at 588.413 kb on - strand, within EFB2_00583at 588.413 kb on - strand, within EFB2_00583at 588.434 kb on + strand, within EFB2_00583at 588.434 kb on + strand, within EFB2_00583at 588.435 kb on - strand, within EFB2_00583at 588.438 kb on + strand, within EFB2_00583at 588.438 kb on + strand, within EFB2_00583at 588.438 kb on + strand, within EFB2_00583at 588.438 kb on + strand, within EFB2_00583at 588.438 kb on + strand, within EFB2_00583at 588.439 kb on - strand, within EFB2_00583at 588.439 kb on - strand, within EFB2_00583at 588.439 kb on - strand, within EFB2_00583at 588.439 kb on - strand, within EFB2_00583at 588.451 kb on + strand, within EFB2_00583at 588.452 kb on - strand, within EFB2_00583at 588.457 kb on - strand, within EFB2_00583at 588.491 kb on + strand, within EFB2_00583at 588.491 kb on + strand, within EFB2_00583at 588.491 kb on + strand, within EFB2_00583at 588.491 kb on + strand, within EFB2_00583at 588.491 kb on + strand, within EFB2_00583at 588.491 kb on + strand, within EFB2_00583at 588.491 kb on + strand, within EFB2_00583at 588.491 kb on + strand, within EFB2_00583at 588.491 kb on + strand, within EFB2_00583at 588.492 kb on - strand, within EFB2_00583at 588.492 kb on - strand, within EFB2_00583at 588.492 kb on - strand, within EFB2_00583at 588.492 kb on - strand, within EFB2_00583at 588.492 kb on - strand, within EFB2_00583

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
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586,336 + -0.1
586,392 + +0.1
586,392 + -2.5
586,392 + +0.3
586,398 + -2.0
586,403 + +0.6
587,149 - EFB2_00581 0.67 -2.4
587,965 + -0.1
587,965 + +0.9
587,993 + -1.3
587,993 + -3.0
587,993 + +0.8
587,993 + +0.7
587,993 + -0.3
587,994 - -0.6
588,003 + +1.1
588,003 + -0.6
588,003 + -1.8
588,003 + -2.9
588,003 + -1.0
588,004 - -0.3
588,004 - -2.4
588,016 + -0.8
588,016 + -1.1
588,016 + -0.7
588,016 + +0.4
588,016 + +0.3
588,016 + -1.5
588,017 - -1.6
588,020 + -0.4
588,020 + +3.1
588,020 + +0.1
588,020 + -0.9
588,020 + +1.0
588,020 + -0.2
588,020 + +0.9
588,021 - +1.6
588,021 - -0.1
588,021 - -0.2
588,050 + -0.3
588,050 + -0.2
588,050 + -0.5
588,050 + +0.4
588,051 - -1.4
588,051 - -2.1
588,051 - -0.9
588,081 + EFB2_00583 0.13 +0.1
588,081 + EFB2_00583 0.13 +1.2
588,081 + EFB2_00583 0.13 +2.4
588,081 + EFB2_00583 0.13 -0.4
588,081 + EFB2_00583 0.13 +1.7
588,081 + EFB2_00583 0.13 +0.8
588,081 + EFB2_00583 0.13 -0.2
588,081 + EFB2_00583 0.13 +0.4
588,081 + EFB2_00583 0.13 -1.2
588,081 + EFB2_00583 0.13 -0.1
588,082 - EFB2_00583 0.13 +0.5
588,082 - EFB2_00583 0.13 -0.1
588,082 - EFB2_00583 0.13 -0.3
588,082 - EFB2_00583 0.13 -2.3
588,082 - EFB2_00583 0.13 -1.1
588,082 - EFB2_00583 0.13 -0.9
588,133 + EFB2_00583 0.22 -1.5
588,133 + EFB2_00583 0.22 -1.7
588,133 + EFB2_00583 0.22 +0.4
588,133 + EFB2_00583 0.22 +2.6
588,133 + EFB2_00583 0.22 -1.8
588,133 + EFB2_00583 0.22 -0.1
588,133 + EFB2_00583 0.22 +0.2
588,133 + EFB2_00583 0.22 +1.1
588,133 + EFB2_00583 0.22 +0.5
588,133 + EFB2_00583 0.22 +1.0
588,133 + EFB2_00583 0.22 +1.6
588,133 + EFB2_00583 0.22 +0.7
588,133 + EFB2_00583 0.22 +1.0
588,133 + EFB2_00583 0.22 -0.8
588,133 + EFB2_00583 0.22 -0.5
588,133 + EFB2_00583 0.22 +0.8
588,134 - EFB2_00583 0.22 -0.4
588,134 - EFB2_00583 0.22 -1.8
588,134 - EFB2_00583 0.22 +0.1
588,134 - EFB2_00583 0.22 -1.9
588,134 - EFB2_00583 0.22 +0.1
588,134 - EFB2_00583 0.22 +2.1
588,134 - EFB2_00583 0.22 -1.9
588,134 - EFB2_00583 0.22 +0.1
588,134 - EFB2_00583 0.22 -1.1
588,134 - EFB2_00583 0.22 -1.0
588,134 - EFB2_00583 0.22 -1.4
588,134 - EFB2_00583 0.22 -2.6
588,134 - EFB2_00583 0.22 +1.7
588,134 - EFB2_00583 0.22 -0.3
588,134 - EFB2_00583 0.22 -1.4
588,134 - EFB2_00583 0.22 -3.2
588,134 - EFB2_00583 0.22 -2.4
588,213 + EFB2_00583 0.35 +1.7
588,214 - EFB2_00583 0.35 -1.6
588,216 + EFB2_00583 0.36 -0.5
588,216 + EFB2_00583 0.36 -0.4
588,216 + EFB2_00583 0.36 -1.1
588,216 + EFB2_00583 0.36 -1.0
588,216 + EFB2_00583 0.36 +0.4
588,216 + EFB2_00583 0.36 -0.4
588,217 - EFB2_00583 0.36 +1.1
588,217 - EFB2_00583 0.36 +0.2
588,217 - EFB2_00583 0.36 +2.1
588,217 - EFB2_00583 0.36 -0.6
588,290 + EFB2_00583 0.48 +1.5
588,412 + EFB2_00583 0.69 +1.3
588,412 + EFB2_00583 0.69 +0.3
588,412 + EFB2_00583 0.69 -0.5
588,412 + EFB2_00583 0.69 -1.1
588,412 + EFB2_00583 0.69 -0.7
588,412 + EFB2_00583 0.69 +0.1
588,413 - EFB2_00583 0.69 -0.1
588,413 - EFB2_00583 0.69 +0.1
588,434 + EFB2_00583 0.72 +0.7
588,434 + EFB2_00583 0.72 -0.0
588,435 - EFB2_00583 0.73 +0.2
588,438 + EFB2_00583 0.73 +0.9
588,438 + EFB2_00583 0.73 -0.6
588,438 + EFB2_00583 0.73 +0.7
588,438 + EFB2_00583 0.73 -1.5
588,438 + EFB2_00583 0.73 -0.6
588,439 - EFB2_00583 0.73 +0.6
588,439 - EFB2_00583 0.73 -0.9
588,439 - EFB2_00583 0.73 +0.4
588,439 - EFB2_00583 0.73 -2.4
588,451 + EFB2_00583 0.75 -1.9
588,452 - EFB2_00583 0.75 -1.6
588,457 - EFB2_00583 0.76 -3.5
588,491 + EFB2_00583 0.82 +0.0
588,491 + EFB2_00583 0.82 -0.4
588,491 + EFB2_00583 0.82 +0.5
588,491 + EFB2_00583 0.82 -1.6
588,491 + EFB2_00583 0.82 -2.9
588,491 + EFB2_00583 0.82 -0.6
588,491 + EFB2_00583 0.82 +1.0
588,491 + EFB2_00583 0.82 +0.5
588,491 + EFB2_00583 0.82 +1.0
588,492 - EFB2_00583 0.82 -0.3
588,492 - EFB2_00583 0.82 +1.1
588,492 - EFB2_00583 0.82 +1.0
588,492 - EFB2_00583 0.82 +0.5
588,492 - EFB2_00583 0.82 -2.3

Or see this region's nucleotide sequence