Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EFB2_00338 and EFB2_00339 overlap by 4 nucleotides EFB2_00339 and EFB2_00340 overlap by 1 nucleotides EFB2_00340 and EFB2_00341 are separated by 110 nucleotides EFB2_00341 and EFB2_00342 are separated by 54 nucleotides
EFB2_00338: EFB2_00338 - Nickel transport system permease protein NikC, at 353,012 to 353,845
_00338
EFB2_00339: EFB2_00339 - Nickel transport system permease protein NikB, at 353,842 to 354,786
_00339
EFB2_00340: EFB2_00340 - Nickel-binding periplasmic protein, at 354,786 to 356,360
_00340
EFB2_00341: EFB2_00341 - hypothetical protein, at 356,471 to 357,058
_00341
EFB2_00342: EFB2_00342 - Putative transport protein YhhT, at 357,113 to 358,162
_00342
Position (kb) 354
355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 353.871 kb on + strand at 353.871 kb on + strand at 353.872 kb on - strand at 353.913 kb on + strand at 353.913 kb on + strand at 353.913 kb on + strand at 353.914 kb on - strand at 353.914 kb on - strand at 353.914 kb on - strand at 353.914 kb on - strand at 353.914 kb on - strand at 353.946 kb on + strand, within EFB2_00339 at 353.946 kb on + strand, within EFB2_00339 at 353.946 kb on + strand, within EFB2_00339 at 353.946 kb on + strand, within EFB2_00339 at 353.946 kb on + strand, within EFB2_00339 at 353.947 kb on - strand, within EFB2_00339 at 353.947 kb on - strand, within EFB2_00339 at 353.947 kb on - strand, within EFB2_00339 at 353.947 kb on - strand, within EFB2_00339 at 354.111 kb on + strand, within EFB2_00339 at 354.111 kb on + strand, within EFB2_00339 at 354.112 kb on - strand, within EFB2_00339 at 354.192 kb on + strand, within EFB2_00339 at 354.192 kb on + strand, within EFB2_00339 at 354.192 kb on + strand, within EFB2_00339 at 354.193 kb on - strand, within EFB2_00339 at 354.193 kb on - strand, within EFB2_00339 at 354.231 kb on + strand, within EFB2_00339 at 354.231 kb on + strand, within EFB2_00339 at 354.231 kb on + strand, within EFB2_00339 at 354.231 kb on + strand, within EFB2_00339 at 354.231 kb on + strand, within EFB2_00339 at 354.232 kb on - strand, within EFB2_00339 at 354.232 kb on - strand, within EFB2_00339 at 354.232 kb on - strand, within EFB2_00339 at 354.232 kb on - strand, within EFB2_00339 at 354.232 kb on - strand, within EFB2_00339 at 354.232 kb on - strand, within EFB2_00339 at 354.232 kb on - strand, within EFB2_00339 at 354.232 kb on - strand, within EFB2_00339 at 354.232 kb on - strand, within EFB2_00339 at 354.245 kb on - strand, within EFB2_00339 at 354.245 kb on - strand, within EFB2_00339 at 354.305 kb on + strand, within EFB2_00339 at 354.305 kb on + strand, within EFB2_00339 at 354.305 kb on + strand, within EFB2_00339 at 354.305 kb on + strand, within EFB2_00339 at 354.305 kb on + strand, within EFB2_00339 at 354.305 kb on + strand, within EFB2_00339 at 354.306 kb on - strand, within EFB2_00339 at 354.306 kb on - strand, within EFB2_00339 at 354.306 kb on - strand, within EFB2_00339 at 354.306 kb on - strand, within EFB2_00339 at 354.306 kb on - strand, within EFB2_00339 at 354.306 kb on - strand, within EFB2_00339 at 354.348 kb on + strand, within EFB2_00339 at 354.349 kb on - strand, within EFB2_00339 at 354.349 kb on - strand, within EFB2_00339 at 354.454 kb on + strand, within EFB2_00339 at 354.454 kb on + strand, within EFB2_00339 at 354.454 kb on + strand, within EFB2_00339 at 354.454 kb on + strand, within EFB2_00339 at 354.454 kb on + strand, within EFB2_00339 at 354.455 kb on - strand, within EFB2_00339 at 354.455 kb on - strand, within EFB2_00339 at 354.455 kb on - strand, within EFB2_00339 at 354.455 kb on - strand, within EFB2_00339 at 354.455 kb on - strand, within EFB2_00339 at 354.458 kb on - strand, within EFB2_00339 at 354.507 kb on + strand, within EFB2_00339 at 354.507 kb on + strand, within EFB2_00339 at 354.507 kb on + strand, within EFB2_00339 at 354.508 kb on - strand, within EFB2_00339 at 354.508 kb on - strand, within EFB2_00339 at 354.544 kb on - strand, within EFB2_00339 at 354.544 kb on - strand, within EFB2_00339 at 354.584 kb on + strand, within EFB2_00339 at 354.584 kb on + strand, within EFB2_00339 at 354.585 kb on - strand, within EFB2_00339 at 354.585 kb on - strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.593 kb on + strand, within EFB2_00339 at 354.594 kb on - strand, within EFB2_00339 at 354.594 kb on - strand, within EFB2_00339 at 354.594 kb on - strand, within EFB2_00339 at 354.594 kb on - strand, within EFB2_00339 at 354.594 kb on - strand, within EFB2_00339 at 354.594 kb on - strand, within EFB2_00339 at 354.594 kb on - strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.618 kb on + strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.619 kb on - strand, within EFB2_00339 at 354.628 kb on - strand, within EFB2_00339 at 354.660 kb on + strand, within EFB2_00339 at 354.660 kb on + strand, within EFB2_00339 at 354.660 kb on + strand, within EFB2_00339 at 354.660 kb on + strand, within EFB2_00339 at 354.660 kb on + strand, within EFB2_00339 at 354.660 kb on + strand, within EFB2_00339 at 354.660 kb on + strand, within EFB2_00339 at 354.661 kb on - strand, within EFB2_00339 at 354.661 kb on - strand, within EFB2_00339 at 354.661 kb on - strand, within EFB2_00339 at 354.661 kb on - strand, within EFB2_00339 at 354.661 kb on - strand, within EFB2_00339 at 354.664 kb on + strand, within EFB2_00339 at 354.664 kb on + strand, within EFB2_00339 at 354.665 kb on - strand, within EFB2_00339 at 354.665 kb on - strand, within EFB2_00339 at 354.665 kb on - strand, within EFB2_00339 at 354.665 kb on - strand, within EFB2_00339 at 354.674 kb on + strand, within EFB2_00339 at 354.675 kb on - strand, within EFB2_00339 at 354.675 kb on - strand, within EFB2_00339 at 354.769 kb on + strand at 354.769 kb on + strand at 354.769 kb on + strand at 354.769 kb on + strand at 354.770 kb on - strand at 354.770 kb on - strand at 354.770 kb on - strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.772 kb on + strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.773 kb on - strand at 354.776 kb on + strand at 354.776 kb on + strand at 354.777 kb on - strand at 354.777 kb on - strand at 354.777 kb on - strand at 354.777 kb on - strand at 354.777 kb on - strand at 354.777 kb on - strand at 354.777 kb on - strand at 354.787 kb on + strand at 354.803 kb on + strand at 354.803 kb on + strand at 354.803 kb on + strand at 354.803 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.889 kb on + strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.890 kb on - strand at 354.896 kb on + strand at 354.896 kb on + strand at 354.896 kb on + strand at 354.897 kb on - strand at 354.904 kb on + strand at 354.905 kb on - strand at 355.090 kb on + strand, within EFB2_00340 at 355.090 kb on + strand, within EFB2_00340 at 355.090 kb on + strand, within EFB2_00340 at 355.090 kb on + strand, within EFB2_00340 at 355.090 kb on + strand, within EFB2_00340 at 355.091 kb on - strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.150 kb on + strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.151 kb on - strand, within EFB2_00340 at 355.154 kb on + strand, within EFB2_00340 at 355.154 kb on + strand, within EFB2_00340 at 355.154 kb on + strand, within EFB2_00340 at 355.154 kb on + strand, within EFB2_00340 at 355.154 kb on + strand, within EFB2_00340 at 355.154 kb on + strand, within EFB2_00340 at 355.154 kb on + strand, within EFB2_00340 at 355.155 kb on - strand, within EFB2_00340 at 355.155 kb on - strand, within EFB2_00340 at 355.155 kb on - strand, within EFB2_00340 at 355.155 kb on - strand, within EFB2_00340 at 355.155 kb on - strand, within EFB2_00340 at 355.155 kb on - strand, within EFB2_00340 at 355.155 kb on - strand, within EFB2_00340 at 355.155 kb on - strand, within EFB2_00340 at 355.205 kb on + strand, within EFB2_00340 at 355.205 kb on + strand, within EFB2_00340 at 355.206 kb on - strand, within EFB2_00340 at 355.366 kb on + strand, within EFB2_00340 at 355.367 kb on - strand, within EFB2_00340 at 355.439 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.444 kb on + strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.445 kb on - strand, within EFB2_00340 at 355.455 kb on - strand, within EFB2_00340 at 355.484 kb on - strand, within EFB2_00340 at 355.484 kb on - strand, within EFB2_00340 at 355.487 kb on + strand, within EFB2_00340 at 355.487 kb on + strand, within EFB2_00340 at 355.488 kb on - strand, within EFB2_00340 at 355.488 kb on - strand, within EFB2_00340 at 355.533 kb on - strand, within EFB2_00340 at 355.582 kb on + strand, within EFB2_00340 at 355.582 kb on + strand, within EFB2_00340 at 355.582 kb on + strand, within EFB2_00340 at 355.582 kb on + strand, within EFB2_00340 at 355.583 kb on - strand, within EFB2_00340 at 355.583 kb on - strand, within EFB2_00340 at 355.598 kb on + strand, within EFB2_00340 at 355.613 kb on + strand, within EFB2_00340 at 355.614 kb on - strand, within EFB2_00340 at 355.614 kb on - strand, within EFB2_00340 at 355.623 kb on + strand, within EFB2_00340 at 355.624 kb on - strand, within EFB2_00340 at 355.624 kb on - strand, within EFB2_00340 at 355.626 kb on + strand, within EFB2_00340 at 355.627 kb on - strand, within EFB2_00340 at 355.627 kb on - strand, within EFB2_00340 at 355.642 kb on + strand, within EFB2_00340 at 355.706 kb on + strand, within EFB2_00340 at 355.721 kb on + strand, within EFB2_00340 at 355.722 kb on - strand, within EFB2_00340 at 355.744 kb on + strand, within EFB2_00340 at 355.744 kb on + strand, within EFB2_00340 at 355.744 kb on + strand, within EFB2_00340 at 355.745 kb on - strand, within EFB2_00340 at 355.745 kb on - strand, within EFB2_00340 at 355.771 kb on + strand, within EFB2_00340 at 355.771 kb on + strand, within EFB2_00340 at 355.771 kb on + strand, within EFB2_00340 at 355.771 kb on + strand, within EFB2_00340 at 355.772 kb on - strand, within EFB2_00340 at 355.772 kb on - strand, within EFB2_00340 at 355.772 kb on - strand, within EFB2_00340 at 355.772 kb on - strand, within EFB2_00340 at 355.772 kb on - strand, within EFB2_00340 at 355.772 kb on - strand, within EFB2_00340 at 355.794 kb on + strand, within EFB2_00340 at 355.826 kb on + strand, within EFB2_00340 at 355.871 kb on + strand, within EFB2_00340 at 355.871 kb on + strand, within EFB2_00340 at 355.915 kb on + strand, within EFB2_00340 at 355.915 kb on + strand, within EFB2_00340 at 355.915 kb on + strand, within EFB2_00340 at 355.915 kb on + strand, within EFB2_00340 at 355.915 kb on + strand, within EFB2_00340 at 355.915 kb on + strand, within EFB2_00340 at 355.916 kb on - strand, within EFB2_00340 at 355.916 kb on - strand, within EFB2_00340 at 355.916 kb on - strand, within EFB2_00340 at 355.916 kb on - strand, within EFB2_00340 at 355.916 kb on - strand, within EFB2_00340 at 355.918 kb on + strand, within EFB2_00340 at 355.918 kb on + strand, within EFB2_00340 at 355.918 kb on + strand, within EFB2_00340 at 355.918 kb on + strand, within EFB2_00340 at 355.918 kb on + strand, within EFB2_00340 at 355.918 kb on + strand, within EFB2_00340 at 355.918 kb on + strand, within EFB2_00340 at 355.919 kb on - strand, within EFB2_00340 at 355.919 kb on - strand, within EFB2_00340 at 355.919 kb on - strand, within EFB2_00340 at 355.919 kb on - strand, within EFB2_00340 at 355.919 kb on - strand, within EFB2_00340 at 356.115 kb on - strand, within EFB2_00340 at 356.115 kb on - strand, within EFB2_00340 at 356.115 kb on - strand, within EFB2_00340 at 356.176 kb on + strand, within EFB2_00340 at 356.176 kb on + strand, within EFB2_00340 at 356.177 kb on - strand, within EFB2_00340 at 356.177 kb on - strand, within EFB2_00340 at 356.177 kb on - strand, within EFB2_00340 at 356.194 kb on + strand, within EFB2_00340 at 356.195 kb on - strand, within EFB2_00340 at 356.195 kb on - strand, within EFB2_00340 at 356.195 kb on - strand, within EFB2_00340 at 356.230 kb on + strand at 356.230 kb on + strand at 356.230 kb on + strand at 356.230 kb on + strand at 356.231 kb on - strand at 356.231 kb on - strand at 356.231 kb on - strand at 356.244 kb on + strand at 356.306 kb on + strand at 356.307 kb on - strand at 356.334 kb on + strand at 356.334 kb on + strand at 356.334 kb on + strand at 356.334 kb on + strand at 356.334 kb on + strand at 356.335 kb on - strand at 356.335 kb on - strand at 356.335 kb on - strand at 356.335 kb on - strand at 356.335 kb on - strand at 356.335 kb on - strand at 356.335 kb on - strand at 356.335 kb on - strand at 356.351 kb on + strand at 356.351 kb on + strand at 356.351 kb on + strand at 356.351 kb on + strand at 356.351 kb on + strand at 356.352 kb on - strand at 356.352 kb on - strand at 356.352 kb on - strand at 356.352 kb on - strand at 356.352 kb on - strand at 356.352 kb on - strand at 356.363 kb on + strand at 356.364 kb on - strand at 356.364 kb on - strand at 356.377 kb on + strand at 356.378 kb on - strand at 356.378 kb on - strand at 356.378 kb on - strand at 356.382 kb on + strand at 356.382 kb on + strand at 356.382 kb on + strand at 356.382 kb on + strand at 356.382 kb on + strand at 356.382 kb on + strand at 356.382 kb on + strand at 356.382 kb on + strand at 356.382 kb on + strand at 356.382 kb on + strand at 356.383 kb on - strand at 356.383 kb on - strand at 356.383 kb on - strand at 356.383 kb on - strand at 356.383 kb on - strand at 356.383 kb on - strand at 356.395 kb on + strand at 356.395 kb on + strand at 356.395 kb on + strand at 356.395 kb on + strand at 356.395 kb on + strand at 356.396 kb on - strand at 356.399 kb on + strand at 356.399 kb on + strand at 356.399 kb on + strand at 356.399 kb on + strand at 356.399 kb on + strand at 356.399 kb on + strand at 356.399 kb on + strand at 356.400 kb on - strand at 356.400 kb on - strand at 356.400 kb on - strand at 356.400 kb on - strand at 356.410 kb on + strand at 356.414 kb on + strand at 356.414 kb on + strand at 356.414 kb on + strand at 356.414 kb on + strand at 356.423 kb on + strand at 356.424 kb on - strand at 356.424 kb on - strand at 356.430 kb on + strand at 356.430 kb on + strand at 356.430 kb on + strand at 356.430 kb on + strand at 356.431 kb on - strand at 356.431 kb on - strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.447 kb on + strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.448 kb on - strand at 356.476 kb on + strand at 356.477 kb on - strand at 356.477 kb on - strand at 356.515 kb on + strand at 356.515 kb on + strand at 356.515 kb on + strand at 356.515 kb on + strand at 356.556 kb on - strand, within EFB2_00341 at 356.587 kb on + strand, within EFB2_00341 at 356.587 kb on + strand, within EFB2_00341 at 356.587 kb on + strand, within EFB2_00341 at 356.588 kb on - strand, within EFB2_00341 at 356.588 kb on - strand, within EFB2_00341 at 356.588 kb on - strand, within EFB2_00341 at 356.588 kb on - strand, within EFB2_00341 at 356.588 kb on - strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.589 kb on + strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.590 kb on - strand, within EFB2_00341 at 356.600 kb on + strand, within EFB2_00341 at 356.600 kb on + strand, within EFB2_00341 at 356.638 kb on + strand, within EFB2_00341 at 356.839 kb on + strand, within EFB2_00341 at 356.839 kb on + strand, within EFB2_00341 at 356.840 kb on - strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.846 kb on + strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.847 kb on - strand, within EFB2_00341 at 356.858 kb on + strand, within EFB2_00341 at 356.859 kb on - strand, within EFB2_00341 at 356.859 kb on - strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.901 kb on + strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.902 kb on - strand, within EFB2_00341 at 356.997 kb on - strand, within EFB2_00341 at 357.024 kb on - strand at 357.024 kb on - strand at 357.048 kb on - strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.054 kb on + strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.055 kb on - strand at 357.058 kb on + strand at 357.058 kb on + strand at 357.058 kb on + strand at 357.058 kb on + strand at 357.058 kb on + strand at 357.058 kb on + strand at 357.058 kb on + strand at 357.058 kb on + strand at 357.058 kb on + strand at 357.059 kb on - strand at 357.059 kb on - strand at 357.059 kb on - strand at 357.059 kb on - strand at 357.059 kb on - strand at 357.059 kb on - strand at 357.074 kb on + strand at 357.099 kb on + strand at 357.099 kb on + strand at 357.099 kb on + strand at 357.100 kb on - strand at 357.100 kb on - strand at 357.100 kb on - strand at 357.153 kb on - strand at 357.200 kb on - strand at 357.200 kb on - strand at 357.200 kb on - strand at 357.227 kb on + strand, within EFB2_00342 at 357.227 kb on + strand, within EFB2_00342 at 357.227 kb on + strand, within EFB2_00342 at 357.227 kb on + strand, within EFB2_00342 at 357.227 kb on + strand, within EFB2_00342 at 357.227 kb on + strand, within EFB2_00342 at 357.227 kb on + strand, within EFB2_00342 at 357.227 kb on + strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.228 kb on - strand, within EFB2_00342 at 357.263 kb on + strand, within EFB2_00342 at 357.263 kb on + strand, within EFB2_00342 at 357.263 kb on + strand, within EFB2_00342 at 357.264 kb on - strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.278 kb on + strand, within EFB2_00342 at 357.279 kb on - strand, within EFB2_00342 at 357.279 kb on - strand, within EFB2_00342 at 357.279 kb on - strand, within EFB2_00342 at 357.279 kb on - strand, within EFB2_00342 at 357.279 kb on - strand, within EFB2_00342 at 357.279 kb on - strand, within EFB2_00342 at 357.279 kb on - strand, within EFB2_00342 at 357.326 kb on + strand, within EFB2_00342 at 357.327 kb on - strand, within EFB2_00342 at 357.327 kb on - strand, within EFB2_00342 at 357.332 kb on - strand, within EFB2_00342 at 357.346 kb on + strand, within EFB2_00342 at 357.346 kb on + strand, within EFB2_00342 at 357.346 kb on + strand, within EFB2_00342 at 357.347 kb on - strand, within EFB2_00342 at 357.347 kb on - strand, within EFB2_00342 at 357.347 kb on - strand, within EFB2_00342
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) remove 353,871 + +1.4 353,871 + -1.0 353,872 - +2.4 353,913 + -1.2 353,913 + +1.4 353,913 + +1.1 353,914 - -0.4 353,914 - -1.2 353,914 - -2.4 353,914 - -0.7 353,914 - -0.4 353,946 + EFB2_00339 0.11 -0.5 353,946 + EFB2_00339 0.11 -0.3 353,946 + EFB2_00339 0.11 -0.5 353,946 + EFB2_00339 0.11 -1.0 353,946 + EFB2_00339 0.11 -3.2 353,947 - EFB2_00339 0.11 -2.3 353,947 - EFB2_00339 0.11 -0.5 353,947 - EFB2_00339 0.11 -0.6 353,947 - EFB2_00339 0.11 +0.3 354,111 + EFB2_00339 0.28 +0.7 354,111 + EFB2_00339 0.28 -1.4 354,112 - EFB2_00339 0.29 +0.9 354,192 + EFB2_00339 0.37 +0.7 354,192 + EFB2_00339 0.37 +0.3 354,192 + EFB2_00339 0.37 -0.5 354,193 - EFB2_00339 0.37 +1.8 354,193 - EFB2_00339 0.37 +0.3 354,231 + EFB2_00339 0.41 -1.8 354,231 + EFB2_00339 0.41 +0.0 354,231 + EFB2_00339 0.41 -0.2 354,231 + EFB2_00339 0.41 +0.2 354,231 + EFB2_00339 0.41 +0.3 354,232 - EFB2_00339 0.41 -0.1 354,232 - EFB2_00339 0.41 -1.0 354,232 - EFB2_00339 0.41 -0.3 354,232 - EFB2_00339 0.41 -0.7 354,232 - EFB2_00339 0.41 +0.4 354,232 - EFB2_00339 0.41 +0.7 354,232 - EFB2_00339 0.41 -3.2 354,232 - EFB2_00339 0.41 +0.8 354,232 - EFB2_00339 0.41 -2.1 354,245 - EFB2_00339 0.43 +1.8 354,245 - EFB2_00339 0.43 +0.9 354,305 + EFB2_00339 0.49 -2.2 354,305 + EFB2_00339 0.49 -2.7 354,305 + EFB2_00339 0.49 +0.7 354,305 + EFB2_00339 0.49 -0.1 354,305 + EFB2_00339 0.49 -2.3 354,305 + EFB2_00339 0.49 +1.4 354,306 - EFB2_00339 0.49 -1.9 354,306 - EFB2_00339 0.49 +1.5 354,306 - EFB2_00339 0.49 +0.8 354,306 - EFB2_00339 0.49 -0.1 354,306 - EFB2_00339 0.49 -3.6 354,306 - EFB2_00339 0.49 +1.0 354,348 + EFB2_00339 0.54 +0.4 354,349 - EFB2_00339 0.54 -0.3 354,349 - EFB2_00339 0.54 -0.1 354,454 + EFB2_00339 0.65 -1.3 354,454 + EFB2_00339 0.65 +0.1 354,454 + EFB2_00339 0.65 -0.1 354,454 + EFB2_00339 0.65 -0.7 354,454 + EFB2_00339 0.65 +0.1 354,455 - EFB2_00339 0.65 +0.1 354,455 - EFB2_00339 0.65 +0.5 354,455 - EFB2_00339 0.65 -0.6 354,455 - EFB2_00339 0.65 -1.4 354,455 - EFB2_00339 0.65 +0.3 354,458 - EFB2_00339 0.65 +0.3 354,507 + EFB2_00339 0.70 +2.0 354,507 + EFB2_00339 0.70 +0.9 354,507 + EFB2_00339 0.70 +1.1 354,508 - EFB2_00339 0.70 -2.1 354,508 - EFB2_00339 0.70 -0.6 354,544 - EFB2_00339 0.74 -1.6 354,544 - EFB2_00339 0.74 -1.0 354,584 + EFB2_00339 0.79 -2.3 354,584 + EFB2_00339 0.79 -0.1 354,585 - EFB2_00339 0.79 +0.4 354,585 - EFB2_00339 0.79 -0.4 354,593 + EFB2_00339 0.79 -1.1 354,593 + EFB2_00339 0.79 -0.1 354,593 + EFB2_00339 0.79 +0.8 354,593 + EFB2_00339 0.79 +0.2 354,593 + EFB2_00339 0.79 -0.2 354,593 + EFB2_00339 0.79 +0.6 354,593 + EFB2_00339 0.79 +0.3 354,593 + EFB2_00339 0.79 +1.0 354,593 + EFB2_00339 0.79 -1.9 354,593 + EFB2_00339 0.79 -1.4 354,594 - EFB2_00339 0.80 +0.2 354,594 - EFB2_00339 0.80 -1.9 354,594 - EFB2_00339 0.80 +0.9 354,594 - EFB2_00339 0.80 -1.1 354,594 - EFB2_00339 0.80 +0.8 354,594 - EFB2_00339 0.80 +0.7 354,594 - EFB2_00339 0.80 +0.7 354,618 + EFB2_00339 0.82 +0.4 354,618 + EFB2_00339 0.82 +0.0 354,618 + EFB2_00339 0.82 +0.7 354,618 + EFB2_00339 0.82 -0.5 354,618 + EFB2_00339 0.82 -0.2 354,618 + EFB2_00339 0.82 +2.0 354,618 + EFB2_00339 0.82 -0.0 354,618 + EFB2_00339 0.82 +0.5 354,618 + EFB2_00339 0.82 -1.9 354,618 + EFB2_00339 0.82 +1.2 354,618 + EFB2_00339 0.82 -1.0 354,618 + EFB2_00339 0.82 +1.0 354,618 + EFB2_00339 0.82 -1.8 354,618 + EFB2_00339 0.82 -0.3 354,619 - EFB2_00339 0.82 +1.3 354,619 - EFB2_00339 0.82 -2.1 354,619 - EFB2_00339 0.82 +0.5 354,619 - EFB2_00339 0.82 -2.0 354,619 - EFB2_00339 0.82 +0.2 354,619 - EFB2_00339 0.82 -0.8 354,619 - EFB2_00339 0.82 -2.6 354,619 - EFB2_00339 0.82 -0.8 354,619 - EFB2_00339 0.82 -2.7 354,619 - EFB2_00339 0.82 +1.6 354,619 - EFB2_00339 0.82 -0.8 354,619 - EFB2_00339 0.82 -2.0 354,619 - EFB2_00339 0.82 +0.9 354,619 - EFB2_00339 0.82 -2.7 354,619 - EFB2_00339 0.82 +1.7 354,619 - EFB2_00339 0.82 -0.1 354,619 - EFB2_00339 0.82 -0.9 354,619 - EFB2_00339 0.82 -1.0 354,619 - EFB2_00339 0.82 -1.2 354,619 - EFB2_00339 0.82 +1.0 354,619 - EFB2_00339 0.82 -2.1 354,619 - EFB2_00339 0.82 -1.2 354,619 - EFB2_00339 0.82 -0.7 354,619 - EFB2_00339 0.82 -1.4 354,628 - EFB2_00339 0.83 +0.2 354,660 + EFB2_00339 0.87 +1.2 354,660 + EFB2_00339 0.87 +1.2 354,660 + EFB2_00339 0.87 +0.3 354,660 + EFB2_00339 0.87 -1.3 354,660 + EFB2_00339 0.87 -2.5 354,660 + EFB2_00339 0.87 +0.5 354,660 + EFB2_00339 0.87 -1.3 354,661 - EFB2_00339 0.87 +0.1 354,661 - 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+0.5 357,055 - +0.1 357,055 - -1.1 357,055 - -2.2 357,055 - +2.0 357,055 - -3.1 357,055 - -0.3 357,055 - +0.2 357,055 - -0.5 357,055 - -0.6 357,055 - -0.2 357,055 - +0.1 357,058 + -1.0 357,058 + -0.6 357,058 + -2.2 357,058 + +1.8 357,058 + +0.9 357,058 + +1.3 357,058 + -2.2 357,058 + -2.7 357,058 + -1.5 357,059 - -0.5 357,059 - -0.1 357,059 - +2.3 357,059 - +0.3 357,059 - +0.5 357,059 - +0.3 357,074 + +0.7 357,099 + +0.7 357,099 + -0.3 357,099 + +0.4 357,100 - +0.7 357,100 - +0.5 357,100 - -1.5 357,153 - +0.2 357,200 - -0.9 357,200 - +0.8 357,200 - +0.1 357,227 + EFB2_00342 0.11 -2.9 357,227 + EFB2_00342 0.11 +0.4 357,227 + EFB2_00342 0.11 +1.9 357,227 + EFB2_00342 0.11 +0.5 357,227 + EFB2_00342 0.11 +0.8 357,227 + EFB2_00342 0.11 +0.5 357,227 + EFB2_00342 0.11 +0.3 357,227 + EFB2_00342 0.11 +0.1 357,228 - EFB2_00342 0.11 +0.5 357,228 - EFB2_00342 0.11 +0.5 357,228 - EFB2_00342 0.11 +1.1 357,228 - EFB2_00342 0.11 +0.6 357,228 - EFB2_00342 0.11 -0.6 357,228 - EFB2_00342 0.11 -0.1 357,228 - EFB2_00342 0.11 -1.7 357,228 - EFB2_00342 0.11 +0.9 357,228 - EFB2_00342 0.11 +0.6 357,228 - EFB2_00342 0.11 -2.9 357,228 - EFB2_00342 0.11 +1.2 357,263 + EFB2_00342 0.14 +0.7 357,263 + EFB2_00342 0.14 +1.9 357,263 + EFB2_00342 0.14 +0.8 357,264 - EFB2_00342 0.14 +0.4 357,278 + EFB2_00342 0.16 -0.5 357,278 + EFB2_00342 0.16 -2.0 357,278 + EFB2_00342 0.16 -0.8 357,278 + EFB2_00342 0.16 +1.4 357,278 + EFB2_00342 0.16 -2.5 357,278 + EFB2_00342 0.16 -1.5 357,278 + EFB2_00342 0.16 -0.7 357,278 + EFB2_00342 0.16 +0.6 357,278 + EFB2_00342 0.16 +0.0 357,278 + EFB2_00342 0.16 -0.7 357,279 - EFB2_00342 0.16 -1.4 357,279 - EFB2_00342 0.16 -0.1 357,279 - EFB2_00342 0.16 +0.9 357,279 - EFB2_00342 0.16 +2.5 357,279 - EFB2_00342 0.16 -1.0 357,279 - EFB2_00342 0.16 +1.2 357,279 - EFB2_00342 0.16 -2.8 357,326 + EFB2_00342 0.20 +0.4 357,327 - EFB2_00342 0.20 -1.1 357,327 - EFB2_00342 0.20 +0.7 357,332 - EFB2_00342 0.21 +0.9 357,346 + EFB2_00342 0.22 -2.2 357,346 + EFB2_00342 0.22 +1.1 357,346 + EFB2_00342 0.22 +0.6 357,347 - EFB2_00342 0.22 +1.6 357,347 - EFB2_00342 0.22 +1.9 357,347 - EFB2_00342 0.22 +0.2
Or see this region's nucleotide sequence