Experiment: Wheat Arabinoxylan; filtered 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04274 and BACOVA_04275 are separated by 181 nucleotides BACOVA_04275 and BACOVA_04276 are separated by 81 nucleotides
BACOVA_04274: BACOVA_04274 - efflux transporter, RND family, MFP subunit, at 161,133 to 162,380
_04274
BACOVA_04275: BACOVA_04275 - pyridine nucleotide-disulfide oxidoreductase, at 162,562 to 163,938
_04275
BACOVA_04276: BACOVA_04276 - mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 164,020 to 164,925
_04276
Position (kb) 162
163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 161.600 kb on + strand, within BACOVA_04274 at 161.604 kb on + strand, within BACOVA_04274 at 161.604 kb on + strand, within BACOVA_04274 at 161.645 kb on + strand, within BACOVA_04274 at 161.645 kb on + strand, within BACOVA_04274 at 161.645 kb on + strand, within BACOVA_04274 at 161.645 kb on + strand, within BACOVA_04274 at 161.645 kb on + strand, within BACOVA_04274 at 161.645 kb on + strand, within BACOVA_04274 at 161.645 kb on + strand, within BACOVA_04274 at 161.648 kb on + strand, within BACOVA_04274 at 161.650 kb on + strand, within BACOVA_04274 at 161.655 kb on - strand, within BACOVA_04274 at 161.660 kb on + strand, within BACOVA_04274 at 161.661 kb on - strand, within BACOVA_04274 at 161.699 kb on + strand, within BACOVA_04274 at 161.699 kb on + strand, within BACOVA_04274 at 161.699 kb on + strand, within BACOVA_04274 at 161.772 kb on + strand, within BACOVA_04274 at 161.790 kb on - strand, within BACOVA_04274 at 161.791 kb on + strand, within BACOVA_04274 at 161.792 kb on - strand, within BACOVA_04274 at 161.831 kb on + strand, within BACOVA_04274 at 161.831 kb on + strand, within BACOVA_04274 at 161.832 kb on - strand, within BACOVA_04274 at 161.832 kb on - strand, within BACOVA_04274 at 161.834 kb on - strand, within BACOVA_04274 at 161.890 kb on + strand, within BACOVA_04274 at 161.945 kb on + strand, within BACOVA_04274 at 161.945 kb on + strand, within BACOVA_04274 at 161.945 kb on + strand, within BACOVA_04274 at 161.981 kb on + strand, within BACOVA_04274 at 161.981 kb on + strand, within BACOVA_04274 at 162.005 kb on + strand, within BACOVA_04274 at 162.006 kb on - strand, within BACOVA_04274 at 162.007 kb on + strand, within BACOVA_04274 at 162.041 kb on + strand, within BACOVA_04274 at 162.042 kb on - strand, within BACOVA_04274 at 162.087 kb on - strand, within BACOVA_04274 at 162.090 kb on + strand, within BACOVA_04274 at 162.096 kb on + strand, within BACOVA_04274 at 162.202 kb on - strand, within BACOVA_04274 at 162.275 kb on + strand at 162.275 kb on + strand at 162.276 kb on - strand at 162.276 kb on - strand at 162.276 kb on - strand at 162.279 kb on + strand at 162.280 kb on - strand at 162.293 kb on + strand at 162.294 kb on - strand at 162.296 kb on + strand at 162.296 kb on + strand at 162.297 kb on - strand at 162.297 kb on - strand at 162.327 kb on + strand at 162.335 kb on + strand at 162.338 kb on + strand at 162.338 kb on + strand at 162.393 kb on - strand at 162.400 kb on + strand at 162.400 kb on + strand at 162.418 kb on + strand at 162.424 kb on - strand at 162.425 kb on + strand at 162.427 kb on + strand at 162.529 kb on + strand at 162.536 kb on + strand at 162.537 kb on - strand at 162.537 kb on - strand at 162.563 kb on + strand at 162.579 kb on + strand at 162.580 kb on - strand at 162.580 kb on - strand at 162.694 kb on - strand at 162.714 kb on - strand, within BACOVA_04275 at 162.736 kb on + strand, within BACOVA_04275 at 162.736 kb on + strand, within BACOVA_04275 at 162.742 kb on - strand, within BACOVA_04275 at 162.766 kb on - strand, within BACOVA_04275 at 162.821 kb on - strand, within BACOVA_04275 at 162.825 kb on + strand, within BACOVA_04275 at 162.849 kb on + strand, within BACOVA_04275 at 162.918 kb on + strand, within BACOVA_04275 at 162.919 kb on - strand, within BACOVA_04275 at 162.922 kb on + strand, within BACOVA_04275 at 162.922 kb on + strand, within BACOVA_04275 at 162.923 kb on - strand, within BACOVA_04275 at 162.925 kb on + strand, within BACOVA_04275 at 163.015 kb on - strand, within BACOVA_04275 at 163.041 kb on + strand, within BACOVA_04275 at 163.158 kb on + strand, within BACOVA_04275 at 163.189 kb on + strand, within BACOVA_04275 at 163.193 kb on - strand, within BACOVA_04275 at 163.198 kb on - strand, within BACOVA_04275 at 163.328 kb on + strand, within BACOVA_04275 at 163.329 kb on - strand, within BACOVA_04275 at 163.361 kb on + strand, within BACOVA_04275 at 163.400 kb on - strand, within BACOVA_04275 at 163.441 kb on + strand, within BACOVA_04275 at 163.441 kb on + strand, within BACOVA_04275 at 163.442 kb on - strand, within BACOVA_04275 at 163.442 kb on - strand, within BACOVA_04275 at 163.442 kb on - strand, within BACOVA_04275 at 163.442 kb on - strand, within BACOVA_04275 at 163.578 kb on + strand, within BACOVA_04275 at 163.579 kb on - strand, within BACOVA_04275 at 163.589 kb on + strand, within BACOVA_04275 at 163.599 kb on + strand, within BACOVA_04275 at 163.600 kb on - strand, within BACOVA_04275 at 163.660 kb on - strand, within BACOVA_04275 at 163.696 kb on - strand, within BACOVA_04275 at 163.726 kb on + strand, within BACOVA_04275 at 163.764 kb on + strand, within BACOVA_04275 at 163.785 kb on - strand, within BACOVA_04275 at 163.785 kb on - strand, within BACOVA_04275 at 163.809 kb on - strand at 163.809 kb on - strand at 163.809 kb on - strand at 163.822 kb on + strand at 163.828 kb on + strand at 163.828 kb on + strand at 163.894 kb on + strand at 163.931 kb on - strand at 163.931 kb on - strand at 163.931 kb on - strand at 163.939 kb on - strand at 163.963 kb on - strand at 163.965 kb on + strand at 163.984 kb on + strand at 164.070 kb on + strand at 164.154 kb on - strand, within BACOVA_04276 at 164.155 kb on + strand, within BACOVA_04276 at 164.155 kb on + strand, within BACOVA_04276 at 164.155 kb on + strand, within BACOVA_04276 at 164.156 kb on - strand, within BACOVA_04276 at 164.156 kb on - strand, within BACOVA_04276 at 164.156 kb on - strand, within BACOVA_04276 at 164.156 kb on - strand, within BACOVA_04276 at 164.160 kb on + strand, within BACOVA_04276 at 164.205 kb on + strand, within BACOVA_04276 at 164.206 kb on - strand, within BACOVA_04276 at 164.224 kb on - strand, within BACOVA_04276 at 164.268 kb on + strand, within BACOVA_04276 at 164.302 kb on - strand, within BACOVA_04276 at 164.325 kb on - strand, within BACOVA_04276 at 164.344 kb on - strand, within BACOVA_04276 at 164.346 kb on - strand, within BACOVA_04276 at 164.400 kb on - strand, within BACOVA_04276 at 164.422 kb on - strand, within BACOVA_04276 at 164.422 kb on - strand, within BACOVA_04276 at 164.424 kb on - strand, within BACOVA_04276 at 164.443 kb on - strand, within BACOVA_04276 at 164.460 kb on + strand, within BACOVA_04276 at 164.517 kb on + strand, within BACOVA_04276 at 164.519 kb on + strand, within BACOVA_04276 at 164.529 kb on + strand, within BACOVA_04276 at 164.591 kb on + strand, within BACOVA_04276 at 164.611 kb on - strand, within BACOVA_04276 at 164.613 kb on - strand, within BACOVA_04276 at 164.613 kb on - strand, within BACOVA_04276 at 164.613 kb on - strand, within BACOVA_04276 at 164.686 kb on - strand, within BACOVA_04276 at 164.764 kb on - strand, within BACOVA_04276 at 164.816 kb on + strand, within BACOVA_04276 at 164.816 kb on + strand, within BACOVA_04276 at 164.816 kb on + strand, within BACOVA_04276 at 164.820 kb on + strand, within BACOVA_04276 at 164.820 kb on + strand, within BACOVA_04276 at 164.821 kb on - strand, within BACOVA_04276 at 164.825 kb on - strand, within BACOVA_04276 at 164.907 kb on + strand at 164.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/mL (C) remove 161,600 + BACOVA_04274 0.37 +0.1 161,604 + BACOVA_04274 0.38 +0.3 161,604 + BACOVA_04274 0.38 +0.3 161,645 + BACOVA_04274 0.41 +1.1 161,645 + BACOVA_04274 0.41 -0.6 161,645 + BACOVA_04274 0.41 +0.2 161,645 + BACOVA_04274 0.41 +0.9 161,645 + BACOVA_04274 0.41 -0.3 161,645 + BACOVA_04274 0.41 +0.1 161,645 + BACOVA_04274 0.41 +0.2 161,648 + BACOVA_04274 0.41 -0.1 161,650 + BACOVA_04274 0.41 -0.2 161,655 - BACOVA_04274 0.42 -2.0 161,660 + BACOVA_04274 0.42 +0.0 161,661 - BACOVA_04274 0.42 -0.6 161,699 + BACOVA_04274 0.45 +0.2 161,699 + BACOVA_04274 0.45 -1.6 161,699 + BACOVA_04274 0.45 +1.0 161,772 + BACOVA_04274 0.51 -0.6 161,790 - BACOVA_04274 0.53 +0.7 161,791 + BACOVA_04274 0.53 -0.2 161,792 - BACOVA_04274 0.53 -1.6 161,831 + BACOVA_04274 0.56 +0.0 161,831 + BACOVA_04274 0.56 +0.6 161,832 - BACOVA_04274 0.56 +0.2 161,832 - BACOVA_04274 0.56 -0.1 161,834 - BACOVA_04274 0.56 +1.4 161,890 + BACOVA_04274 0.61 +0.5 161,945 + BACOVA_04274 0.65 +1.3 161,945 + BACOVA_04274 0.65 -1.0 161,945 + BACOVA_04274 0.65 +0.2 161,981 + BACOVA_04274 0.68 +0.6 161,981 + BACOVA_04274 0.68 -1.1 162,005 + BACOVA_04274 0.70 -0.7 162,006 - BACOVA_04274 0.70 -0.8 162,007 + BACOVA_04274 0.70 -0.3 162,041 + BACOVA_04274 0.73 +1.1 162,042 - BACOVA_04274 0.73 -0.9 162,087 - BACOVA_04274 0.76 -0.8 162,090 + BACOVA_04274 0.77 +0.1 162,096 + BACOVA_04274 0.77 -0.3 162,202 - BACOVA_04274 0.86 +1.2 162,275 + +0.3 162,275 + -0.2 162,276 - -0.6 162,276 - +1.5 162,276 - +0.6 162,279 + +0.5 162,280 - -0.6 162,293 + -0.1 162,294 - -2.1 162,296 + -0.2 162,296 + -0.7 162,297 - -1.8 162,297 - -0.7 162,327 + +0.3 162,335 + +0.2 162,338 + +0.2 162,338 + +0.9 162,393 - -1.1 162,400 + -0.3 162,400 + +0.1 162,418 + -0.3 162,424 - -1.1 162,425 + +0.0 162,427 + -0.8 162,529 + -0.6 162,536 + -0.1 162,537 - +0.4 162,537 - +0.0 162,563 + -1.4 162,579 + +1.0 162,580 - -0.2 162,580 - +0.6 162,694 - -0.3 162,714 - BACOVA_04275 0.11 -0.4 162,736 + BACOVA_04275 0.13 +1.2 162,736 + BACOVA_04275 0.13 -0.7 162,742 - BACOVA_04275 0.13 -1.4 162,766 - BACOVA_04275 0.15 -0.3 162,821 - BACOVA_04275 0.19 -0.1 162,825 + BACOVA_04275 0.19 -1.6 162,849 + BACOVA_04275 0.21 +0.9 162,918 + BACOVA_04275 0.26 -0.6 162,919 - BACOVA_04275 0.26 -0.1 162,922 + BACOVA_04275 0.26 +0.2 162,922 + BACOVA_04275 0.26 -0.2 162,923 - BACOVA_04275 0.26 -0.2 162,925 + BACOVA_04275 0.26 +0.6 163,015 - BACOVA_04275 0.33 -0.3 163,041 + BACOVA_04275 0.35 +0.4 163,158 + BACOVA_04275 0.43 +0.5 163,189 + BACOVA_04275 0.46 +1.0 163,193 - BACOVA_04275 0.46 -0.6 163,198 - BACOVA_04275 0.46 +1.5 163,328 + BACOVA_04275 0.56 +0.0 163,329 - BACOVA_04275 0.56 +0.2 163,361 + BACOVA_04275 0.58 -0.2 163,400 - BACOVA_04275 0.61 +0.6 163,441 + BACOVA_04275 0.64 -1.0 163,441 + BACOVA_04275 0.64 +0.0 163,442 - BACOVA_04275 0.64 -2.5 163,442 - BACOVA_04275 0.64 -0.1 163,442 - BACOVA_04275 0.64 +0.7 163,442 - BACOVA_04275 0.64 +0.4 163,578 + BACOVA_04275 0.74 +1.1 163,579 - BACOVA_04275 0.74 +0.7 163,589 + BACOVA_04275 0.75 -1.6 163,599 + BACOVA_04275 0.75 +1.0 163,600 - BACOVA_04275 0.75 +0.5 163,660 - BACOVA_04275 0.80 +0.2 163,696 - BACOVA_04275 0.82 -0.3 163,726 + BACOVA_04275 0.85 -1.3 163,764 + BACOVA_04275 0.87 +1.1 163,785 - BACOVA_04275 0.89 +0.0 163,785 - BACOVA_04275 0.89 +0.7 163,809 - +0.2 163,809 - -0.5 163,809 - +0.2 163,822 + +0.0 163,828 + -0.0 163,828 + +0.3 163,894 + -1.1 163,931 - +0.5 163,931 - -0.4 163,931 - +0.0 163,939 - -1.3 163,963 - +0.5 163,965 + -0.8 163,984 + +0.8 164,070 + -1.1 164,154 - BACOVA_04276 0.15 -0.0 164,155 + BACOVA_04276 0.15 +0.3 164,155 + BACOVA_04276 0.15 +0.6 164,155 + BACOVA_04276 0.15 -0.7 164,156 - BACOVA_04276 0.15 +0.7 164,156 - BACOVA_04276 0.15 +1.2 164,156 - BACOVA_04276 0.15 -0.2 164,156 - BACOVA_04276 0.15 +0.7 164,160 + BACOVA_04276 0.15 -0.3 164,205 + BACOVA_04276 0.20 +0.2 164,206 - BACOVA_04276 0.21 -2.0 164,224 - BACOVA_04276 0.23 -1.4 164,268 + BACOVA_04276 0.27 -1.3 164,302 - BACOVA_04276 0.31 -1.1 164,325 - BACOVA_04276 0.34 -0.3 164,344 - BACOVA_04276 0.36 -2.0 164,346 - BACOVA_04276 0.36 +0.0 164,400 - BACOVA_04276 0.42 -2.6 164,422 - BACOVA_04276 0.44 -0.8 164,422 - BACOVA_04276 0.44 -3.0 164,424 - BACOVA_04276 0.45 -1.4 164,443 - BACOVA_04276 0.47 -1.1 164,460 + BACOVA_04276 0.49 -1.3 164,517 + BACOVA_04276 0.55 -1.8 164,519 + BACOVA_04276 0.55 -1.1 164,529 + BACOVA_04276 0.56 -0.5 164,591 + BACOVA_04276 0.63 -0.6 164,611 - BACOVA_04276 0.65 -0.8 164,613 - BACOVA_04276 0.65 -1.3 164,613 - BACOVA_04276 0.65 -0.6 164,613 - BACOVA_04276 0.65 -1.3 164,686 - BACOVA_04276 0.74 -1.1 164,764 - BACOVA_04276 0.82 -1.1 164,816 + BACOVA_04276 0.88 -1.4 164,816 + BACOVA_04276 0.88 -2.5 164,816 + BACOVA_04276 0.88 -0.8 164,820 + BACOVA_04276 0.88 -0.9 164,820 + BACOVA_04276 0.88 -1.7 164,821 - BACOVA_04276 0.88 -1.3 164,825 - BACOVA_04276 0.89 +0.2 164,907 + -1.1 164,908 - -0.6
Or see this region's nucleotide sequence