Experiment: Wheat Arabinoxylan; filtered 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03562 and BACOVA_03563 are separated by 91 nucleotides BACOVA_03563 and BACOVA_03564 are separated by 7 nucleotides BACOVA_03564 and BACOVA_03565 are separated by 134 nucleotides
BACOVA_03562: BACOVA_03562 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 339,278 to 343,339
_03562
BACOVA_03563: BACOVA_03563 - hypothetical protein, at 343,431 to 344,816
_03563
BACOVA_03564: BACOVA_03564 - RNA polymerase sigma-70 factor, at 344,824 to 345,333
_03564
BACOVA_03565: BACOVA_03565 - TonB-linked outer membrane protein, SusC/RagA family, at 345,468 to 348,704
_03565
Position (kb) 343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 342.482 kb on + strand, within BACOVA_03562 at 342.485 kb on - strand, within BACOVA_03562 at 342.485 kb on - strand, within BACOVA_03562 at 342.532 kb on + strand, within BACOVA_03562 at 342.533 kb on - strand, within BACOVA_03562 at 342.533 kb on - strand, within BACOVA_03562 at 342.562 kb on - strand, within BACOVA_03562 at 342.580 kb on + strand, within BACOVA_03562 at 342.693 kb on + strand, within BACOVA_03562 at 342.697 kb on + strand, within BACOVA_03562 at 342.697 kb on + strand, within BACOVA_03562 at 342.698 kb on - strand, within BACOVA_03562 at 342.698 kb on - strand, within BACOVA_03562 at 342.698 kb on - strand, within BACOVA_03562 at 342.794 kb on - strand, within BACOVA_03562 at 342.803 kb on - strand, within BACOVA_03562 at 342.803 kb on - strand, within BACOVA_03562 at 342.820 kb on + strand, within BACOVA_03562 at 342.848 kb on + strand, within BACOVA_03562 at 342.850 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.870 kb on - strand, within BACOVA_03562 at 342.870 kb on - strand, within BACOVA_03562 at 342.873 kb on + strand, within BACOVA_03562 at 342.874 kb on - strand, within BACOVA_03562 at 342.890 kb on + strand, within BACOVA_03562 at 342.891 kb on - strand, within BACOVA_03562 at 342.897 kb on + strand, within BACOVA_03562 at 342.897 kb on + strand, within BACOVA_03562 at 342.917 kb on - strand, within BACOVA_03562 at 342.986 kb on - strand at 342.991 kb on + strand at 342.991 kb on + strand at 342.991 kb on + strand at 342.992 kb on - strand at 342.995 kb on - strand at 343.002 kb on + strand at 343.003 kb on - strand at 343.075 kb on + strand at 343.076 kb on - strand at 343.113 kb on + strand at 343.136 kb on - strand at 343.136 kb on - strand at 343.159 kb on + strand at 343.211 kb on + strand at 343.211 kb on + strand at 343.213 kb on + strand at 343.217 kb on - strand at 343.259 kb on + strand at 343.271 kb on + strand at 343.334 kb on - strand at 343.338 kb on - strand at 343.360 kb on + strand at 343.360 kb on + strand at 343.361 kb on - strand at 343.361 kb on - strand at 343.389 kb on + strand at 343.390 kb on - strand at 343.391 kb on - strand at 343.407 kb on + strand at 343.410 kb on + strand at 343.410 kb on + strand at 343.424 kb on + strand at 343.424 kb on + strand at 343.520 kb on + strand at 343.541 kb on - strand at 343.541 kb on - strand at 343.546 kb on + strand at 343.608 kb on - strand, within BACOVA_03563 at 343.623 kb on + strand, within BACOVA_03563 at 343.623 kb on + strand, within BACOVA_03563 at 343.624 kb on - strand, within BACOVA_03563 at 343.624 kb on - strand, within BACOVA_03563 at 343.624 kb on - strand, within BACOVA_03563 at 343.626 kb on - strand, within BACOVA_03563 at 343.639 kb on + strand, within BACOVA_03563 at 343.640 kb on - strand, within BACOVA_03563 at 343.667 kb on - strand, within BACOVA_03563 at 343.671 kb on - strand, within BACOVA_03563 at 343.744 kb on + strand, within BACOVA_03563 at 343.745 kb on - strand, within BACOVA_03563 at 343.820 kb on - strand, within BACOVA_03563 at 343.820 kb on - strand, within BACOVA_03563 at 343.839 kb on - strand, within BACOVA_03563 at 343.839 kb on - strand, within BACOVA_03563 at 343.840 kb on + strand, within BACOVA_03563 at 343.862 kb on - strand, within BACOVA_03563 at 343.961 kb on - strand, within BACOVA_03563 at 343.975 kb on + strand, within BACOVA_03563 at 343.984 kb on + strand, within BACOVA_03563 at 344.004 kb on + strand, within BACOVA_03563 at 344.005 kb on - strand, within BACOVA_03563 at 344.073 kb on + strand, within BACOVA_03563 at 344.073 kb on + strand, within BACOVA_03563 at 344.074 kb on - strand, within BACOVA_03563 at 344.074 kb on - strand, within BACOVA_03563 at 344.082 kb on + strand, within BACOVA_03563 at 344.082 kb on + strand, within BACOVA_03563 at 344.083 kb on - strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.105 kb on + strand, within BACOVA_03563 at 344.110 kb on - strand, within BACOVA_03563 at 344.110 kb on - strand, within BACOVA_03563 at 344.144 kb on + strand, within BACOVA_03563 at 344.153 kb on + strand, within BACOVA_03563 at 344.185 kb on - strand, within BACOVA_03563 at 344.200 kb on - strand, within BACOVA_03563 at 344.217 kb on - strand, within BACOVA_03563 at 344.221 kb on + strand, within BACOVA_03563 at 344.266 kb on + strand, within BACOVA_03563 at 344.267 kb on - strand, within BACOVA_03563 at 344.271 kb on + strand, within BACOVA_03563 at 344.272 kb on - strand, within BACOVA_03563 at 344.276 kb on + strand, within BACOVA_03563 at 344.276 kb on + strand, within BACOVA_03563 at 344.277 kb on - strand, within BACOVA_03563 at 344.277 kb on - strand, within BACOVA_03563 at 344.292 kb on + strand, within BACOVA_03563 at 344.359 kb on - strand, within BACOVA_03563 at 344.376 kb on - strand, within BACOVA_03563 at 344.396 kb on + strand, within BACOVA_03563 at 344.396 kb on + strand, within BACOVA_03563 at 344.526 kb on - strand, within BACOVA_03563 at 344.526 kb on - strand, within BACOVA_03563 at 344.543 kb on + strand, within BACOVA_03563 at 344.544 kb on - strand, within BACOVA_03563 at 344.662 kb on - strand, within BACOVA_03563 at 344.664 kb on + strand, within BACOVA_03563 at 344.664 kb on + strand, within BACOVA_03563 at 344.665 kb on - strand, within BACOVA_03563 at 344.665 kb on - strand, within BACOVA_03563 at 344.677 kb on + strand, within BACOVA_03563 at 344.677 kb on + strand, within BACOVA_03563 at 344.684 kb on + strand at 344.684 kb on + strand at 344.706 kb on + strand at 344.760 kb on + strand at 344.761 kb on - strand at 344.799 kb on + strand at 344.800 kb on - strand at 344.802 kb on + strand at 344.803 kb on - strand at 344.804 kb on + strand at 344.819 kb on + strand at 344.848 kb on - strand at 344.848 kb on - strand at 344.848 kb on - strand at 344.853 kb on - strand at 344.853 kb on - strand at 344.853 kb on - strand at 344.863 kb on + strand at 344.865 kb on + strand at 344.865 kb on + strand at 344.866 kb on - strand at 344.882 kb on + strand, within BACOVA_03564 at 344.897 kb on + strand, within BACOVA_03564 at 344.902 kb on + strand, within BACOVA_03564 at 344.949 kb on - strand, within BACOVA_03564 at 344.971 kb on - strand, within BACOVA_03564 at 345.040 kb on + strand, within BACOVA_03564 at 345.056 kb on - strand, within BACOVA_03564 at 345.079 kb on + strand, within BACOVA_03564 at 345.082 kb on - strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.105 kb on + strand, within BACOVA_03564 at 345.106 kb on - strand, within BACOVA_03564 at 345.193 kb on - strand, within BACOVA_03564 at 345.199 kb on + strand, within BACOVA_03564 at 345.277 kb on + strand, within BACOVA_03564 at 345.313 kb on + strand at 345.316 kb on - strand at 345.334 kb on + strand at 345.334 kb on + strand at 345.334 kb on + strand at 345.353 kb on + strand at 345.354 kb on - strand at 345.354 kb on - strand at 345.439 kb on - strand at 345.446 kb on + strand at 345.447 kb on - strand at 345.490 kb on + strand at 345.491 kb on - strand at 345.491 kb on - strand at 345.494 kb on + strand at 345.495 kb on - strand at 345.495 kb on - strand at 345.495 kb on - strand at 345.499 kb on + strand at 345.518 kb on - strand at 345.618 kb on - strand at 345.618 kb on - strand at 345.693 kb on - strand at 345.714 kb on - strand at 345.714 kb on - strand at 345.725 kb on - strand at 345.755 kb on + strand at 345.781 kb on + strand at 345.806 kb on - strand, within BACOVA_03565
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/mL (C) remove 342,482 + BACOVA_03562 0.79 -0.5 342,485 - BACOVA_03562 0.79 -0.8 342,485 - BACOVA_03562 0.79 +0.8 342,532 + BACOVA_03562 0.80 -0.0 342,533 - BACOVA_03562 0.80 +1.0 342,533 - BACOVA_03562 0.80 -0.2 342,562 - BACOVA_03562 0.81 +0.1 342,580 + BACOVA_03562 0.81 +0.3 342,693 + BACOVA_03562 0.84 -0.7 342,697 + BACOVA_03562 0.84 -0.4 342,697 + BACOVA_03562 0.84 +0.2 342,698 - BACOVA_03562 0.84 +0.5 342,698 - BACOVA_03562 0.84 -0.5 342,698 - BACOVA_03562 0.84 +0.4 342,794 - BACOVA_03562 0.87 -0.7 342,803 - BACOVA_03562 0.87 -1.0 342,803 - BACOVA_03562 0.87 +1.1 342,820 + BACOVA_03562 0.87 +0.4 342,848 + BACOVA_03562 0.88 +0.3 342,850 + BACOVA_03562 0.88 -0.2 342,869 + BACOVA_03562 0.88 -0.5 342,869 + BACOVA_03562 0.88 -0.2 342,869 + BACOVA_03562 0.88 +0.7 342,869 + BACOVA_03562 0.88 -0.9 342,870 - BACOVA_03562 0.88 -0.9 342,870 - BACOVA_03562 0.88 -1.1 342,873 + BACOVA_03562 0.89 +1.3 342,874 - BACOVA_03562 0.89 -2.1 342,890 + BACOVA_03562 0.89 -0.4 342,891 - BACOVA_03562 0.89 +0.1 342,897 + BACOVA_03562 0.89 +0.9 342,897 + BACOVA_03562 0.89 +1.2 342,917 - BACOVA_03562 0.90 +0.0 342,986 - +1.1 342,991 + -1.9 342,991 + -0.4 342,991 + +0.8 342,992 - +0.2 342,995 - -0.0 343,002 + -1.1 343,003 - -0.4 343,075 + +0.1 343,076 - +1.4 343,113 + -0.1 343,136 - +0.4 343,136 - -1.5 343,159 + -0.8 343,211 + -0.5 343,211 + +0.1 343,213 + -0.0 343,217 - -0.9 343,259 + -2.3 343,271 + +0.0 343,334 - -0.4 343,338 - -0.4 343,360 + +0.1 343,360 + +0.0 343,361 - -0.1 343,361 - +0.1 343,389 + +0.6 343,390 - -0.7 343,391 - +0.2 343,407 + -0.2 343,410 + -0.8 343,410 + -0.1 343,424 + -0.8 343,424 + +0.2 343,520 + +0.2 343,541 - +0.3 343,541 - -0.1 343,546 + +0.1 343,608 - BACOVA_03563 0.13 +0.1 343,623 + BACOVA_03563 0.14 -0.0 343,623 + BACOVA_03563 0.14 -0.7 343,624 - BACOVA_03563 0.14 +0.3 343,624 - BACOVA_03563 0.14 +0.1 343,624 - BACOVA_03563 0.14 -0.3 343,626 - BACOVA_03563 0.14 +0.2 343,639 + BACOVA_03563 0.15 -0.9 343,640 - BACOVA_03563 0.15 +0.0 343,667 - BACOVA_03563 0.17 -0.9 343,671 - BACOVA_03563 0.17 +0.8 343,744 + BACOVA_03563 0.23 -0.6 343,745 - BACOVA_03563 0.23 -1.0 343,820 - BACOVA_03563 0.28 -0.4 343,820 - BACOVA_03563 0.28 +0.1 343,839 - BACOVA_03563 0.29 +0.7 343,839 - BACOVA_03563 0.29 -0.4 343,840 + BACOVA_03563 0.30 +0.5 343,862 - BACOVA_03563 0.31 -1.2 343,961 - BACOVA_03563 0.38 +0.7 343,975 + BACOVA_03563 0.39 -2.7 343,984 + BACOVA_03563 0.40 -0.2 344,004 + BACOVA_03563 0.41 +0.6 344,005 - BACOVA_03563 0.41 -0.4 344,073 + BACOVA_03563 0.46 -0.4 344,073 + BACOVA_03563 0.46 -0.7 344,074 - BACOVA_03563 0.46 +0.9 344,074 - BACOVA_03563 0.46 +1.2 344,082 + BACOVA_03563 0.47 -0.2 344,082 + BACOVA_03563 0.47 -0.1 344,083 - BACOVA_03563 0.47 +1.7 344,084 + BACOVA_03563 0.47 -0.4 344,084 + BACOVA_03563 0.47 +0.3 344,084 + BACOVA_03563 0.47 +0.3 344,085 - BACOVA_03563 0.47 -0.9 344,085 - BACOVA_03563 0.47 +0.5 344,085 - BACOVA_03563 0.47 -0.5 344,085 - BACOVA_03563 0.47 -0.0 344,085 - BACOVA_03563 0.47 +0.3 344,105 + BACOVA_03563 0.49 +0.1 344,110 - BACOVA_03563 0.49 -0.3 344,110 - BACOVA_03563 0.49 -1.3 344,144 + BACOVA_03563 0.51 -1.8 344,153 + BACOVA_03563 0.52 -0.4 344,185 - BACOVA_03563 0.54 +0.1 344,200 - BACOVA_03563 0.55 +0.2 344,217 - BACOVA_03563 0.57 -0.5 344,221 + BACOVA_03563 0.57 -0.3 344,266 + BACOVA_03563 0.60 -1.7 344,267 - BACOVA_03563 0.60 -3.3 344,271 + BACOVA_03563 0.61 -0.6 344,272 - BACOVA_03563 0.61 -0.7 344,276 + BACOVA_03563 0.61 -0.7 344,276 + BACOVA_03563 0.61 -0.9 344,277 - BACOVA_03563 0.61 -1.9 344,277 - BACOVA_03563 0.61 -2.5 344,292 + BACOVA_03563 0.62 -0.4 344,359 - BACOVA_03563 0.67 -0.8 344,376 - BACOVA_03563 0.68 +0.2 344,396 + BACOVA_03563 0.70 -2.2 344,396 + BACOVA_03563 0.70 -0.3 344,526 - BACOVA_03563 0.79 -0.8 344,526 - BACOVA_03563 0.79 +0.2 344,543 + BACOVA_03563 0.80 -0.9 344,544 - BACOVA_03563 0.80 +0.4 344,662 - BACOVA_03563 0.89 +0.9 344,664 + BACOVA_03563 0.89 +0.7 344,664 + BACOVA_03563 0.89 -0.8 344,665 - BACOVA_03563 0.89 -0.4 344,665 - BACOVA_03563 0.89 +1.2 344,677 + BACOVA_03563 0.90 -0.7 344,677 + BACOVA_03563 0.90 +0.4 344,684 + -1.5 344,684 + -0.5 344,706 + +1.3 344,760 + -0.9 344,761 - +0.1 344,799 + -0.1 344,800 - -0.8 344,802 + +0.2 344,803 - -0.9 344,804 + -0.1 344,819 + +0.3 344,848 - +1.6 344,848 - -0.5 344,848 - -0.5 344,853 - -1.0 344,853 - +0.1 344,853 - -0.6 344,863 + -0.1 344,865 + -0.1 344,865 + +0.2 344,866 - -0.8 344,882 + BACOVA_03564 0.11 +0.7 344,897 + BACOVA_03564 0.14 -0.6 344,902 + BACOVA_03564 0.15 +0.5 344,949 - BACOVA_03564 0.25 -0.7 344,971 - BACOVA_03564 0.29 -0.9 345,040 + BACOVA_03564 0.42 -0.8 345,056 - BACOVA_03564 0.45 -0.1 345,079 + BACOVA_03564 0.50 +0.9 345,082 - BACOVA_03564 0.51 +0.4 345,085 + BACOVA_03564 0.51 -0.3 345,085 + BACOVA_03564 0.51 -0.9 345,085 + BACOVA_03564 0.51 -0.4 345,105 + BACOVA_03564 0.55 +0.1 345,106 - BACOVA_03564 0.55 -0.5 345,193 - BACOVA_03564 0.72 +0.7 345,199 + BACOVA_03564 0.74 -0.7 345,277 + BACOVA_03564 0.89 -2.2 345,313 + -1.1 345,316 - -1.4 345,334 + +0.7 345,334 + -1.6 345,334 + -0.7 345,353 + -0.4 345,354 - -0.1 345,354 - -0.5 345,439 - +0.3 345,446 + -1.0 345,447 - +0.1 345,490 + -0.5 345,491 - +0.6 345,491 - -1.3 345,494 + +0.7 345,495 - -0.1 345,495 - -0.5 345,495 - +0.9 345,499 + -0.3 345,518 - -0.6 345,618 - +0.1 345,618 - -0.2 345,693 - -0.8 345,714 - +0.2 345,714 - -0.4 345,725 - -0.3 345,755 + -0.5 345,781 + +0.2 345,806 - BACOVA_03565 0.10 -1.4
Or see this region's nucleotide sequence