Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03420

Experiment: Wheat Arabinoxylan; filtered 1 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03419 and BACOVA_03420 are separated by 200 nucleotidesBACOVA_03420 and BACOVA_03421 are separated by 70 nucleotides BACOVA_03419: BACOVA_03419 - glycosyl hydrolase family 3 C-terminal domain protein, at 130,314 to 132,899 _03419 BACOVA_03420: BACOVA_03420 - hypothetical protein, at 133,100 to 133,261 _03420 BACOVA_03421: BACOVA_03421 - glycosyl hydrolase, family 43, at 133,332 to 135,059 _03421 Position (kb) 133 134Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 132.166 kb on + strand, within BACOVA_03419at 132.182 kb on + strand, within BACOVA_03419at 132.183 kb on - strand, within BACOVA_03419at 132.279 kb on + strand, within BACOVA_03419at 132.366 kb on - strand, within BACOVA_03419at 132.366 kb on - strand, within BACOVA_03419at 132.396 kb on + strand, within BACOVA_03419at 132.397 kb on - strand, within BACOVA_03419at 132.398 kb on + strand, within BACOVA_03419at 132.398 kb on + strand, within BACOVA_03419at 132.429 kb on + strand, within BACOVA_03419at 132.466 kb on - strand, within BACOVA_03419at 132.483 kb on - strand, within BACOVA_03419at 132.483 kb on - strand, within BACOVA_03419at 132.483 kb on - strand, within BACOVA_03419at 132.487 kb on - strand, within BACOVA_03419at 132.492 kb on + strand, within BACOVA_03419at 132.493 kb on - strand, within BACOVA_03419at 132.494 kb on + strand, within BACOVA_03419at 132.538 kb on - strand, within BACOVA_03419at 132.601 kb on + strand, within BACOVA_03419at 132.611 kb on + strand, within BACOVA_03419at 132.623 kb on + strand, within BACOVA_03419at 132.624 kb on - strand, within BACOVA_03419at 132.701 kb on + strandat 132.702 kb on - strandat 132.702 kb on - strandat 132.729 kb on - strandat 132.755 kb on - strandat 132.759 kb on - strandat 132.796 kb on + strandat 132.832 kb on - strandat 132.832 kb on - strandat 132.844 kb on - strandat 132.844 kb on - strandat 132.866 kb on + strandat 132.867 kb on - strandat 132.933 kb on - strandat 132.948 kb on - strandat 132.951 kb on + strandat 133.010 kb on + strandat 133.011 kb on - strandat 133.033 kb on - strandat 133.033 kb on - strandat 133.054 kb on + strandat 133.055 kb on - strandat 133.128 kb on + strand, within BACOVA_03420at 133.128 kb on + strand, within BACOVA_03420at 133.129 kb on - strand, within BACOVA_03420at 133.129 kb on - strand, within BACOVA_03420at 133.180 kb on - strand, within BACOVA_03420at 133.200 kb on + strand, within BACOVA_03420at 133.200 kb on + strand, within BACOVA_03420at 133.200 kb on + strand, within BACOVA_03420at 133.220 kb on - strand, within BACOVA_03420at 133.228 kb on + strand, within BACOVA_03420at 133.230 kb on + strand, within BACOVA_03420at 133.230 kb on + strand, within BACOVA_03420at 133.231 kb on - strand, within BACOVA_03420at 133.231 kb on - strand, within BACOVA_03420at 133.231 kb on - strand, within BACOVA_03420at 133.251 kb on + strandat 133.255 kb on + strandat 133.256 kb on - strandat 133.256 kb on - strandat 133.256 kb on - strandat 133.256 kb on - strandat 133.256 kb on - strandat 133.257 kb on + strandat 133.262 kb on + strandat 133.263 kb on - strandat 133.263 kb on - strandat 133.292 kb on - strandat 133.309 kb on + strandat 133.332 kb on - strandat 133.385 kb on - strandat 133.388 kb on + strandat 133.388 kb on + strandat 133.392 kb on - strandat 133.406 kb on + strandat 133.427 kb on + strandat 133.463 kb on + strandat 133.484 kb on + strandat 133.485 kb on - strandat 133.489 kb on - strandat 133.521 kb on + strand, within BACOVA_03421at 133.522 kb on - strand, within BACOVA_03421at 133.522 kb on - strand, within BACOVA_03421at 133.545 kb on + strand, within BACOVA_03421at 133.574 kb on + strand, within BACOVA_03421at 133.581 kb on + strand, within BACOVA_03421at 133.582 kb on - strand, within BACOVA_03421at 133.585 kb on - strand, within BACOVA_03421at 133.625 kb on + strand, within BACOVA_03421at 133.693 kb on + strand, within BACOVA_03421at 133.726 kb on + strand, within BACOVA_03421at 133.726 kb on + strand, within BACOVA_03421at 133.727 kb on - strand, within BACOVA_03421at 133.727 kb on - strand, within BACOVA_03421at 133.727 kb on - strand, within BACOVA_03421at 133.727 kb on - strand, within BACOVA_03421at 133.727 kb on - strand, within BACOVA_03421at 133.727 kb on - strand, within BACOVA_03421at 133.746 kb on + strand, within BACOVA_03421at 133.746 kb on + strand, within BACOVA_03421at 133.747 kb on - strand, within BACOVA_03421at 133.747 kb on - strand, within BACOVA_03421at 133.747 kb on - strand, within BACOVA_03421at 133.747 kb on - strand, within BACOVA_03421at 133.747 kb on - strand, within BACOVA_03421at 133.749 kb on - strand, within BACOVA_03421at 133.764 kb on - strand, within BACOVA_03421at 133.771 kb on - strand, within BACOVA_03421at 133.772 kb on + strand, within BACOVA_03421at 133.778 kb on - strand, within BACOVA_03421at 133.914 kb on + strand, within BACOVA_03421at 133.915 kb on - strand, within BACOVA_03421at 133.915 kb on - strand, within BACOVA_03421at 133.925 kb on + strand, within BACOVA_03421at 133.925 kb on + strand, within BACOVA_03421at 133.925 kb on + strand, within BACOVA_03421at 133.926 kb on - strand, within BACOVA_03421at 133.989 kb on + strand, within BACOVA_03421at 133.989 kb on + strand, within BACOVA_03421at 133.990 kb on - strand, within BACOVA_03421at 133.990 kb on - strand, within BACOVA_03421at 134.056 kb on + strand, within BACOVA_03421at 134.057 kb on - strand, within BACOVA_03421at 134.057 kb on - strand, within BACOVA_03421at 134.090 kb on + strand, within BACOVA_03421at 134.094 kb on + strand, within BACOVA_03421at 134.116 kb on - strand, within BACOVA_03421at 134.119 kb on + strand, within BACOVA_03421at 134.120 kb on - strand, within BACOVA_03421at 134.194 kb on - strand, within BACOVA_03421at 134.208 kb on - strand, within BACOVA_03421at 134.260 kb on + strand, within BACOVA_03421

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/mL (C)
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132,166 + BACOVA_03419 0.72 -0.6
132,182 + BACOVA_03419 0.72 +0.8
132,183 - BACOVA_03419 0.72 -0.1
132,279 + BACOVA_03419 0.76 +2.1
132,366 - BACOVA_03419 0.79 -0.4
132,366 - BACOVA_03419 0.79 -0.1
132,396 + BACOVA_03419 0.81 +0.5
132,397 - BACOVA_03419 0.81 -0.5
132,398 + BACOVA_03419 0.81 +0.2
132,398 + BACOVA_03419 0.81 -1.0
132,429 + BACOVA_03419 0.82 +0.0
132,466 - BACOVA_03419 0.83 +1.1
132,483 - BACOVA_03419 0.84 +0.9
132,483 - BACOVA_03419 0.84 -0.3
132,483 - BACOVA_03419 0.84 -1.0
132,487 - BACOVA_03419 0.84 +0.1
132,492 + BACOVA_03419 0.84 +0.3
132,493 - BACOVA_03419 0.84 -0.2
132,494 + BACOVA_03419 0.84 -0.7
132,538 - BACOVA_03419 0.86 +0.6
132,601 + BACOVA_03419 0.88 +1.3
132,611 + BACOVA_03419 0.89 -0.1
132,623 + BACOVA_03419 0.89 -0.0
132,624 - BACOVA_03419 0.89 -0.2
132,701 + -0.3
132,702 - -0.6
132,702 - +0.4
132,729 - -0.1
132,755 - +0.0
132,759 - -0.7
132,796 + -0.5
132,832 - +0.3
132,832 - +0.7
132,844 - -0.5
132,844 - -0.3
132,866 + -0.7
132,867 - -0.1
132,933 - +0.0
132,948 - -0.2
132,951 + +0.0
133,010 + +1.1
133,011 - +0.5
133,033 - +0.2
133,033 - +0.4
133,054 + +2.0
133,055 - +0.4
133,128 + BACOVA_03420 0.17 +1.4
133,128 + BACOVA_03420 0.17 +0.7
133,129 - BACOVA_03420 0.18 +0.4
133,129 - BACOVA_03420 0.18 +0.5
133,180 - BACOVA_03420 0.49 +0.8
133,200 + BACOVA_03420 0.62 +1.8
133,200 + BACOVA_03420 0.62 +1.2
133,200 + BACOVA_03420 0.62 -0.5
133,220 - BACOVA_03420 0.74 -3.3
133,228 + BACOVA_03420 0.79 -0.9
133,230 + BACOVA_03420 0.80 +1.5
133,230 + BACOVA_03420 0.80 +0.9
133,231 - BACOVA_03420 0.81 -3.2
133,231 - BACOVA_03420 0.81 -3.5
133,231 - BACOVA_03420 0.81 -2.4
133,251 + +2.1
133,255 + +1.2
133,256 - -2.4
133,256 - -2.2
133,256 - -3.1
133,256 - -2.1
133,256 - -2.3
133,257 + +1.5
133,262 + -1.1
133,263 - -1.1
133,263 - -2.5
133,292 - -2.4
133,309 + +0.3
133,332 - -1.1
133,385 - -1.4
133,388 + -2.5
133,388 + -2.0
133,392 - -3.0
133,406 + -1.8
133,427 + -1.7
133,463 + -3.5
133,484 + -0.6
133,485 - -2.1
133,489 - -2.5
133,521 + BACOVA_03421 0.11 -1.1
133,522 - BACOVA_03421 0.11 -1.1
133,522 - BACOVA_03421 0.11 -4.5
133,545 + BACOVA_03421 0.12 -1.5
133,574 + BACOVA_03421 0.14 -2.3
133,581 + BACOVA_03421 0.14 -1.0
133,582 - BACOVA_03421 0.14 -2.6
133,585 - BACOVA_03421 0.15 -2.1
133,625 + BACOVA_03421 0.17 -1.8
133,693 + BACOVA_03421 0.21 -2.4
133,726 + BACOVA_03421 0.23 -3.2
133,726 + BACOVA_03421 0.23 -2.9
133,727 - BACOVA_03421 0.23 -1.3
133,727 - BACOVA_03421 0.23 -3.6
133,727 - BACOVA_03421 0.23 -0.9
133,727 - BACOVA_03421 0.23 -1.4
133,727 - BACOVA_03421 0.23 -2.9
133,727 - BACOVA_03421 0.23 -0.1
133,746 + BACOVA_03421 0.24 -3.1
133,746 + BACOVA_03421 0.24 -3.7
133,747 - BACOVA_03421 0.24 -2.7
133,747 - BACOVA_03421 0.24 -2.4
133,747 - BACOVA_03421 0.24 -2.9
133,747 - BACOVA_03421 0.24 -1.3
133,747 - BACOVA_03421 0.24 -0.4
133,749 - BACOVA_03421 0.24 -1.4
133,764 - BACOVA_03421 0.25 -1.8
133,771 - BACOVA_03421 0.25 -1.5
133,772 + BACOVA_03421 0.25 -1.1
133,778 - BACOVA_03421 0.26 -1.1
133,914 + BACOVA_03421 0.34 -4.0
133,915 - BACOVA_03421 0.34 -2.9
133,915 - BACOVA_03421 0.34 +0.4
133,925 + BACOVA_03421 0.34 -4.4
133,925 + BACOVA_03421 0.34 -3.0
133,925 + BACOVA_03421 0.34 -1.2
133,926 - BACOVA_03421 0.34 -1.7
133,989 + BACOVA_03421 0.38 -2.3
133,989 + BACOVA_03421 0.38 -2.2
133,990 - BACOVA_03421 0.38 -2.8
133,990 - BACOVA_03421 0.38 -3.8
134,056 + BACOVA_03421 0.42 -2.7
134,057 - BACOVA_03421 0.42 -4.0
134,057 - BACOVA_03421 0.42 -3.9
134,090 + BACOVA_03421 0.44 -1.5
134,094 + BACOVA_03421 0.44 -1.5
134,116 - BACOVA_03421 0.45 -0.9
134,119 + BACOVA_03421 0.46 +0.4
134,120 - BACOVA_03421 0.46 -2.2
134,194 - BACOVA_03421 0.50 -0.6
134,208 - BACOVA_03421 0.51 -1.6
134,260 + BACOVA_03421 0.54 -0.9

Or see this region's nucleotide sequence