Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03136

Experiment: Wheat Arabinoxylan; filtered 1 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03134 and BACOVA_03135 are separated by 40 nucleotidesBACOVA_03135 and BACOVA_03136 are separated by 213 nucleotidesBACOVA_03136 and BACOVA_03137 are separated by 101 nucleotides BACOVA_03134: BACOVA_03134 - thioredoxin, at 227,281 to 227,595 _03134 BACOVA_03135: BACOVA_03135 - hypothetical protein, at 227,636 to 227,971 _03135 BACOVA_03136: BACOVA_03136 - RDD family protein, at 228,185 to 228,910 _03136 BACOVA_03137: BACOVA_03137 - membrane protein, at 229,012 to 229,974 _03137 Position (kb) 228 229Strain fitness (log2 ratio) -2 -1 0 1 2at 227.190 kb on + strandat 227.191 kb on - strandat 227.191 kb on - strandat 227.195 kb on - strandat 227.201 kb on - strandat 227.239 kb on + strandat 227.255 kb on + strandat 227.269 kb on + strandat 227.269 kb on + strandat 227.392 kb on - strand, within BACOVA_03134at 227.579 kb on + strandat 227.606 kb on + strandat 227.607 kb on - strandat 227.607 kb on - strandat 227.609 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.614 kb on - strandat 227.621 kb on - strandat 227.627 kb on + strandat 227.627 kb on + strandat 227.632 kb on + strandat 227.632 kb on + strandat 227.777 kb on + strand, within BACOVA_03135at 227.780 kb on + strand, within BACOVA_03135at 227.780 kb on + strand, within BACOVA_03135at 227.780 kb on + strand, within BACOVA_03135at 227.826 kb on - strand, within BACOVA_03135at 227.942 kb on + strandat 228.006 kb on + strandat 228.007 kb on - strandat 228.026 kb on + strandat 228.026 kb on + strandat 228.028 kb on + strandat 228.029 kb on - strandat 228.066 kb on + strandat 228.067 kb on - strandat 228.073 kb on - strandat 228.188 kb on + strandat 228.205 kb on - strandat 228.284 kb on + strand, within BACOVA_03136at 228.293 kb on - strand, within BACOVA_03136at 228.353 kb on - strand, within BACOVA_03136at 228.393 kb on + strand, within BACOVA_03136at 228.396 kb on - strand, within BACOVA_03136at 228.439 kb on + strand, within BACOVA_03136at 228.440 kb on - strand, within BACOVA_03136at 228.440 kb on - strand, within BACOVA_03136at 228.452 kb on - strand, within BACOVA_03136at 228.594 kb on + strand, within BACOVA_03136at 228.595 kb on - strand, within BACOVA_03136at 228.640 kb on + strand, within BACOVA_03136at 228.717 kb on + strand, within BACOVA_03136at 228.741 kb on - strand, within BACOVA_03136at 228.759 kb on - strand, within BACOVA_03136at 228.760 kb on + strand, within BACOVA_03136at 228.765 kb on - strand, within BACOVA_03136at 228.782 kb on - strand, within BACOVA_03136at 228.947 kb on + strandat 228.952 kb on + strandat 229.023 kb on - strandat 229.030 kb on - strandat 229.117 kb on + strand, within BACOVA_03137at 229.118 kb on - strand, within BACOVA_03137at 229.118 kb on - strand, within BACOVA_03137at 229.118 kb on - strand, within BACOVA_03137at 229.120 kb on - strand, within BACOVA_03137at 229.173 kb on + strand, within BACOVA_03137at 229.179 kb on + strand, within BACOVA_03137at 229.191 kb on + strand, within BACOVA_03137at 229.208 kb on + strand, within BACOVA_03137at 229.209 kb on - strand, within BACOVA_03137at 229.311 kb on - strand, within BACOVA_03137at 229.358 kb on + strand, within BACOVA_03137at 229.398 kb on - strand, within BACOVA_03137at 229.408 kb on + strand, within BACOVA_03137at 229.412 kb on + strand, within BACOVA_03137at 229.412 kb on + strand, within BACOVA_03137at 229.413 kb on - strand, within BACOVA_03137at 229.416 kb on + strand, within BACOVA_03137at 229.416 kb on + strand, within BACOVA_03137at 229.417 kb on - strand, within BACOVA_03137at 229.417 kb on - strand, within BACOVA_03137at 229.417 kb on - strand, within BACOVA_03137at 229.431 kb on + strand, within BACOVA_03137at 229.431 kb on + strand, within BACOVA_03137at 229.432 kb on - strand, within BACOVA_03137at 229.433 kb on + strand, within BACOVA_03137at 229.517 kb on + strand, within BACOVA_03137at 229.518 kb on - strand, within BACOVA_03137at 229.518 kb on - strand, within BACOVA_03137at 229.567 kb on + strand, within BACOVA_03137at 229.567 kb on + strand, within BACOVA_03137at 229.568 kb on - strand, within BACOVA_03137at 229.568 kb on - strand, within BACOVA_03137at 229.568 kb on - strand, within BACOVA_03137at 229.569 kb on + strand, within BACOVA_03137at 229.569 kb on + strand, within BACOVA_03137at 229.570 kb on - strand, within BACOVA_03137at 229.570 kb on - strand, within BACOVA_03137at 229.570 kb on - strand, within BACOVA_03137at 229.575 kb on + strand, within BACOVA_03137at 229.635 kb on - strand, within BACOVA_03137at 229.654 kb on - strand, within BACOVA_03137at 229.719 kb on - strand, within BACOVA_03137at 229.821 kb on + strand, within BACOVA_03137at 229.821 kb on + strand, within BACOVA_03137at 229.822 kb on - strand, within BACOVA_03137at 229.825 kb on - strand, within BACOVA_03137at 229.836 kb on + strand, within BACOVA_03137at 229.837 kb on - strand, within BACOVA_03137at 229.837 kb on - strand, within BACOVA_03137at 229.839 kb on - strand, within BACOVA_03137

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/mL (C)
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227,190 + +1.0
227,191 - -0.7
227,191 - +0.2
227,195 - +0.3
227,201 - +0.6
227,239 + -1.0
227,255 + +0.3
227,269 + -1.0
227,269 + +2.0
227,392 - BACOVA_03134 0.35 -1.3
227,579 + +0.4
227,606 + -0.1
227,607 - +0.3
227,607 - -0.0
227,609 + +0.5
227,613 + +0.7
227,613 + -0.7
227,613 + -2.2
227,613 + -2.3
227,614 - -0.4
227,621 - +0.1
227,627 + -0.3
227,627 + -0.2
227,632 + +0.5
227,632 + -1.7
227,777 + BACOVA_03135 0.42 -0.0
227,780 + BACOVA_03135 0.43 +0.5
227,780 + BACOVA_03135 0.43 +0.1
227,780 + BACOVA_03135 0.43 -0.6
227,826 - BACOVA_03135 0.57 +0.9
227,942 + -0.0
228,006 + -0.3
228,007 - -0.7
228,026 + -1.1
228,026 + -0.5
228,028 + -0.7
228,029 - +1.6
228,066 + -0.2
228,067 - +0.1
228,073 - -0.5
228,188 + -0.3
228,205 - -0.9
228,284 + BACOVA_03136 0.14 +0.4
228,293 - BACOVA_03136 0.15 +0.2
228,353 - BACOVA_03136 0.23 -1.6
228,393 + BACOVA_03136 0.29 +0.2
228,396 - BACOVA_03136 0.29 +0.5
228,439 + BACOVA_03136 0.35 +0.6
228,440 - BACOVA_03136 0.35 -0.0
228,440 - BACOVA_03136 0.35 -0.5
228,452 - BACOVA_03136 0.37 -0.1
228,594 + BACOVA_03136 0.56 -0.3
228,595 - BACOVA_03136 0.56 +0.2
228,640 + BACOVA_03136 0.63 +0.6
228,717 + BACOVA_03136 0.73 -0.1
228,741 - BACOVA_03136 0.77 -0.1
228,759 - BACOVA_03136 0.79 -0.7
228,760 + BACOVA_03136 0.79 -0.9
228,765 - BACOVA_03136 0.80 +1.9
228,782 - BACOVA_03136 0.82 -0.1
228,947 + +0.5
228,952 + +0.1
229,023 - +0.0
229,030 - -0.2
229,117 + BACOVA_03137 0.11 -0.3
229,118 - BACOVA_03137 0.11 +0.4
229,118 - BACOVA_03137 0.11 +0.1
229,118 - BACOVA_03137 0.11 -0.8
229,120 - BACOVA_03137 0.11 -0.7
229,173 + BACOVA_03137 0.17 -1.4
229,179 + BACOVA_03137 0.17 -0.9
229,191 + BACOVA_03137 0.19 -0.0
229,208 + BACOVA_03137 0.20 +0.5
229,209 - BACOVA_03137 0.20 -0.3
229,311 - BACOVA_03137 0.31 -0.3
229,358 + BACOVA_03137 0.36 -0.4
229,398 - BACOVA_03137 0.40 +1.1
229,408 + BACOVA_03137 0.41 +0.9
229,412 + BACOVA_03137 0.42 -0.5
229,412 + BACOVA_03137 0.42 -0.7
229,413 - BACOVA_03137 0.42 -0.5
229,416 + BACOVA_03137 0.42 -0.3
229,416 + BACOVA_03137 0.42 -0.0
229,417 - BACOVA_03137 0.42 +0.5
229,417 - BACOVA_03137 0.42 +0.3
229,417 - BACOVA_03137 0.42 +0.1
229,431 + BACOVA_03137 0.44 +0.4
229,431 + BACOVA_03137 0.44 +0.1
229,432 - BACOVA_03137 0.44 +1.2
229,433 + BACOVA_03137 0.44 -0.4
229,517 + BACOVA_03137 0.52 -0.4
229,518 - BACOVA_03137 0.53 -1.0
229,518 - BACOVA_03137 0.53 +0.8
229,567 + BACOVA_03137 0.58 -0.2
229,567 + BACOVA_03137 0.58 +0.2
229,568 - BACOVA_03137 0.58 -0.0
229,568 - BACOVA_03137 0.58 +0.9
229,568 - BACOVA_03137 0.58 -0.6
229,569 + BACOVA_03137 0.58 +0.2
229,569 + BACOVA_03137 0.58 +0.9
229,570 - BACOVA_03137 0.58 -0.4
229,570 - BACOVA_03137 0.58 -0.3
229,570 - BACOVA_03137 0.58 +0.3
229,575 + BACOVA_03137 0.58 -0.3
229,635 - BACOVA_03137 0.65 +0.6
229,654 - BACOVA_03137 0.67 +0.6
229,719 - BACOVA_03137 0.73 -1.5
229,821 + BACOVA_03137 0.84 +1.3
229,821 + BACOVA_03137 0.84 +1.4
229,822 - BACOVA_03137 0.84 +0.2
229,825 - BACOVA_03137 0.84 +0.3
229,836 + BACOVA_03137 0.86 -0.6
229,837 - BACOVA_03137 0.86 -0.1
229,837 - BACOVA_03137 0.86 -0.5
229,839 - BACOVA_03137 0.86 -0.1

Or see this region's nucleotide sequence