Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02978

Experiment: Wheat Arabinoxylan; filtered 1 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02975 and BACOVA_02976 are separated by 111 nucleotidesBACOVA_02976 and BACOVA_02977 are separated by 115 nucleotidesBACOVA_02977 and BACOVA_02978 are separated by 31 nucleotidesBACOVA_02978 and BACOVA_02979 are separated by 18 nucleotides BACOVA_02975: BACOVA_02975 - trehalose-phosphatase, at 52,791 to 55,064 _02975 BACOVA_02976: BACOVA_02976 - hypothetical protein, at 55,176 to 55,364 _02976 BACOVA_02977: BACOVA_02977 - putative K+-transporting ATPase, F subunit, at 55,480 to 55,593 _02977 BACOVA_02978: BACOVA_02978 - K+-transporting ATPase, A subunit, at 55,625 to 57,331 _02978 BACOVA_02979: BACOVA_02979 - K+-transporting ATPase, B subunit, at 57,350 to 59,383 _02979 Position (kb) 55 56 57 58Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 54.634 kb on - strand, within BACOVA_02975at 54.640 kb on - strand, within BACOVA_02975at 54.725 kb on + strand, within BACOVA_02975at 54.726 kb on - strand, within BACOVA_02975at 54.728 kb on - strand, within BACOVA_02975at 54.728 kb on - strand, within BACOVA_02975at 54.730 kb on - strand, within BACOVA_02975at 54.734 kb on + strand, within BACOVA_02975at 54.734 kb on + strand, within BACOVA_02975at 54.735 kb on - strand, within BACOVA_02975at 54.735 kb on - strand, within BACOVA_02975at 54.736 kb on + strand, within BACOVA_02975at 54.737 kb on - strand, within BACOVA_02975at 54.737 kb on - strand, within BACOVA_02975at 54.737 kb on - strand, within BACOVA_02975at 54.742 kb on + strand, within BACOVA_02975at 54.749 kb on - strand, within BACOVA_02975at 54.768 kb on - strand, within BACOVA_02975at 54.768 kb on - strand, within BACOVA_02975at 54.770 kb on + strand, within BACOVA_02975at 54.770 kb on + strand, within BACOVA_02975at 54.776 kb on + strand, within BACOVA_02975at 54.776 kb on + strand, within BACOVA_02975at 54.777 kb on - strand, within BACOVA_02975at 54.892 kb on - strandat 54.906 kb on + strandat 54.907 kb on - strandat 55.015 kb on - strandat 55.028 kb on + strandat 55.029 kb on - strandat 55.032 kb on - strandat 55.032 kb on - strandat 55.044 kb on - strandat 55.064 kb on + strandat 55.065 kb on - strandat 55.065 kb on - strandat 55.122 kb on - strandat 55.182 kb on - strandat 55.212 kb on - strand, within BACOVA_02976at 55.229 kb on - strand, within BACOVA_02976at 55.256 kb on - strand, within BACOVA_02976at 55.269 kb on - strand, within BACOVA_02976at 55.269 kb on - strand, within BACOVA_02976at 55.374 kb on - strandat 55.411 kb on + strandat 55.432 kb on + strandat 55.513 kb on - strand, within BACOVA_02977at 55.517 kb on - strand, within BACOVA_02977at 55.517 kb on - strand, within BACOVA_02977at 55.517 kb on - strand, within BACOVA_02977at 55.533 kb on - strand, within BACOVA_02977at 55.564 kb on + strand, within BACOVA_02977at 55.565 kb on - strand, within BACOVA_02977at 55.565 kb on - strand, within BACOVA_02977at 55.565 kb on - strand, within BACOVA_02977at 55.616 kb on - strandat 55.622 kb on + strandat 55.622 kb on + strandat 55.623 kb on - strandat 55.624 kb on + strandat 55.631 kb on - strandat 55.659 kb on + strandat 55.706 kb on - strandat 55.706 kb on - strandat 55.769 kb on - strandat 55.769 kb on - strandat 55.867 kb on - strand, within BACOVA_02978at 55.940 kb on - strand, within BACOVA_02978at 55.942 kb on + strand, within BACOVA_02978at 55.951 kb on + strand, within BACOVA_02978at 55.958 kb on - strand, within BACOVA_02978at 55.982 kb on + strand, within BACOVA_02978at 55.983 kb on - strand, within BACOVA_02978at 55.984 kb on + strand, within BACOVA_02978at 55.984 kb on + strand, within BACOVA_02978at 56.006 kb on + strand, within BACOVA_02978at 56.045 kb on - strand, within BACOVA_02978at 56.063 kb on - strand, within BACOVA_02978at 56.063 kb on - strand, within BACOVA_02978at 56.080 kb on + strand, within BACOVA_02978at 56.080 kb on + strand, within BACOVA_02978at 56.080 kb on + strand, within BACOVA_02978at 56.084 kb on - strand, within BACOVA_02978at 56.092 kb on + strand, within BACOVA_02978at 56.146 kb on - strand, within BACOVA_02978at 56.146 kb on - strand, within BACOVA_02978at 56.153 kb on - strand, within BACOVA_02978at 56.159 kb on - strand, within BACOVA_02978at 56.163 kb on + strand, within BACOVA_02978at 56.231 kb on - strand, within BACOVA_02978at 56.242 kb on - strand, within BACOVA_02978at 56.245 kb on + strand, within BACOVA_02978at 56.246 kb on - strand, within BACOVA_02978at 56.285 kb on - strand, within BACOVA_02978at 56.285 kb on - strand, within BACOVA_02978at 56.333 kb on + strand, within BACOVA_02978at 56.333 kb on + strand, within BACOVA_02978at 56.334 kb on - strand, within BACOVA_02978at 56.372 kb on - strand, within BACOVA_02978at 56.376 kb on - strand, within BACOVA_02978at 56.376 kb on - strand, within BACOVA_02978at 56.376 kb on - strand, within BACOVA_02978at 56.430 kb on + strand, within BACOVA_02978at 56.431 kb on - strand, within BACOVA_02978at 56.448 kb on - strand, within BACOVA_02978at 56.476 kb on + strand, within BACOVA_02978at 56.488 kb on - strand, within BACOVA_02978at 56.488 kb on - strand, within BACOVA_02978at 56.518 kb on + strand, within BACOVA_02978at 56.522 kb on - strand, within BACOVA_02978at 56.522 kb on - strand, within BACOVA_02978at 56.680 kb on + strand, within BACOVA_02978at 56.693 kb on - strand, within BACOVA_02978at 56.695 kb on + strand, within BACOVA_02978at 56.729 kb on - strand, within BACOVA_02978at 56.738 kb on - strand, within BACOVA_02978at 56.738 kb on - strand, within BACOVA_02978at 56.777 kb on + strand, within BACOVA_02978at 56.777 kb on + strand, within BACOVA_02978at 56.778 kb on - strand, within BACOVA_02978at 56.778 kb on - strand, within BACOVA_02978at 56.782 kb on + strand, within BACOVA_02978at 56.783 kb on - strand, within BACOVA_02978at 56.783 kb on - strand, within BACOVA_02978at 56.783 kb on - strand, within BACOVA_02978at 56.783 kb on - strand, within BACOVA_02978at 56.783 kb on - strand, within BACOVA_02978at 56.889 kb on + strand, within BACOVA_02978at 56.910 kb on + strand, within BACOVA_02978at 56.939 kb on + strand, within BACOVA_02978at 56.946 kb on - strand, within BACOVA_02978at 56.946 kb on - strand, within BACOVA_02978at 56.993 kb on - strand, within BACOVA_02978at 56.993 kb on - strand, within BACOVA_02978at 57.027 kb on - strand, within BACOVA_02978at 57.032 kb on + strand, within BACOVA_02978at 57.033 kb on - strand, within BACOVA_02978at 57.082 kb on + strand, within BACOVA_02978at 57.083 kb on - strand, within BACOVA_02978at 57.085 kb on + strand, within BACOVA_02978at 57.171 kb on + strandat 57.172 kb on - strandat 57.191 kb on - strandat 57.304 kb on + strandat 57.349 kb on + strandat 57.359 kb on - strandat 57.362 kb on - strandat 57.394 kb on - strandat 57.464 kb on - strandat 57.487 kb on + strandat 57.506 kb on + strandat 57.506 kb on + strandat 57.506 kb on + strandat 57.507 kb on - strandat 57.511 kb on + strandat 57.517 kb on - strandat 57.517 kb on - strandat 57.547 kb on + strandat 57.548 kb on - strandat 57.548 kb on - strandat 57.549 kb on - strandat 57.559 kb on + strand, within BACOVA_02979at 57.560 kb on - strand, within BACOVA_02979at 57.571 kb on + strand, within BACOVA_02979at 57.572 kb on - strand, within BACOVA_02979at 57.573 kb on + strand, within BACOVA_02979at 57.574 kb on - strand, within BACOVA_02979at 57.604 kb on + strand, within BACOVA_02979at 57.605 kb on - strand, within BACOVA_02979at 57.642 kb on + strand, within BACOVA_02979at 57.642 kb on + strand, within BACOVA_02979at 57.642 kb on + strand, within BACOVA_02979at 57.642 kb on + strand, within BACOVA_02979at 57.646 kb on + strand, within BACOVA_02979at 57.647 kb on - strand, within BACOVA_02979at 57.688 kb on + strand, within BACOVA_02979at 57.700 kb on + strand, within BACOVA_02979at 57.732 kb on + strand, within BACOVA_02979at 57.733 kb on - strand, within BACOVA_02979at 57.733 kb on - strand, within BACOVA_02979at 57.733 kb on - strand, within BACOVA_02979at 57.814 kb on + strand, within BACOVA_02979at 57.899 kb on - strand, within BACOVA_02979at 57.900 kb on + strand, within BACOVA_02979at 57.900 kb on + strand, within BACOVA_02979at 57.900 kb on + strand, within BACOVA_02979at 57.900 kb on + strand, within BACOVA_02979at 57.901 kb on - strand, within BACOVA_02979at 58.025 kb on - strand, within BACOVA_02979at 58.075 kb on + strand, within BACOVA_02979at 58.075 kb on + strand, within BACOVA_02979at 58.076 kb on - strand, within BACOVA_02979at 58.076 kb on - strand, within BACOVA_02979at 58.076 kb on - strand, within BACOVA_02979at 58.138 kb on + strand, within BACOVA_02979at 58.138 kb on + strand, within BACOVA_02979at 58.139 kb on - strand, within BACOVA_02979at 58.165 kb on + strand, within BACOVA_02979at 58.175 kb on - strand, within BACOVA_02979at 58.196 kb on - strand, within BACOVA_02979at 58.225 kb on - strand, within BACOVA_02979at 58.247 kb on - strand, within BACOVA_02979at 58.251 kb on + strand, within BACOVA_02979at 58.273 kb on + strand, within BACOVA_02979at 58.274 kb on - strand, within BACOVA_02979at 58.274 kb on - strand, within BACOVA_02979at 58.276 kb on + strand, within BACOVA_02979at 58.329 kb on + strand, within BACOVA_02979

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/mL (C)
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54,634 - BACOVA_02975 0.81 -0.4
54,640 - BACOVA_02975 0.81 -0.7
54,725 + BACOVA_02975 0.85 -0.1
54,726 - BACOVA_02975 0.85 -0.1
54,728 - BACOVA_02975 0.85 +0.3
54,728 - BACOVA_02975 0.85 -0.6
54,730 - BACOVA_02975 0.85 -0.2
54,734 + BACOVA_02975 0.85 +0.0
54,734 + BACOVA_02975 0.85 -1.5
54,735 - BACOVA_02975 0.85 +0.1
54,735 - BACOVA_02975 0.85 -0.5
54,736 + BACOVA_02975 0.86 +0.6
54,737 - BACOVA_02975 0.86 +0.1
54,737 - BACOVA_02975 0.86 -0.3
54,737 - BACOVA_02975 0.86 -3.2
54,742 + BACOVA_02975 0.86 -0.2
54,749 - BACOVA_02975 0.86 +1.0
54,768 - BACOVA_02975 0.87 -2.2
54,768 - BACOVA_02975 0.87 +0.1
54,770 + BACOVA_02975 0.87 -0.0
54,770 + BACOVA_02975 0.87 +0.2
54,776 + BACOVA_02975 0.87 -0.6
54,776 + BACOVA_02975 0.87 +0.2
54,777 - BACOVA_02975 0.87 -1.1
54,892 - -0.5
54,906 + -0.8
54,907 - -1.5
55,015 - +0.5
55,028 + +0.2
55,029 - -1.0
55,032 - +0.3
55,032 - +0.1
55,044 - -1.2
55,064 + +1.0
55,065 - +0.4
55,065 - -0.7
55,122 - -0.4
55,182 - +0.0
55,212 - BACOVA_02976 0.19 -0.3
55,229 - BACOVA_02976 0.28 +0.7
55,256 - BACOVA_02976 0.42 +0.1
55,269 - BACOVA_02976 0.49 -0.0
55,269 - BACOVA_02976 0.49 -1.9
55,374 - +0.3
55,411 + +0.8
55,432 + -2.2
55,513 - BACOVA_02977 0.29 +0.7
55,517 - BACOVA_02977 0.32 -2.1
55,517 - BACOVA_02977 0.32 +1.3
55,517 - BACOVA_02977 0.32 +1.0
55,533 - BACOVA_02977 0.46 -0.4
55,564 + BACOVA_02977 0.74 +0.8
55,565 - BACOVA_02977 0.75 +0.3
55,565 - BACOVA_02977 0.75 +0.7
55,565 - BACOVA_02977 0.75 +0.8
55,616 - -1.5
55,622 + +0.5
55,622 + -1.2
55,623 - +0.2
55,624 + -0.2
55,631 - +0.8
55,659 + +0.4
55,706 - +0.5
55,706 - -0.2
55,769 - -0.4
55,769 - -0.5
55,867 - BACOVA_02978 0.14 +0.7
55,940 - BACOVA_02978 0.18 -0.1
55,942 + BACOVA_02978 0.19 +0.4
55,951 + BACOVA_02978 0.19 -1.3
55,958 - BACOVA_02978 0.20 -0.2
55,982 + BACOVA_02978 0.21 -0.9
55,983 - BACOVA_02978 0.21 +0.7
55,984 + BACOVA_02978 0.21 -0.2
55,984 + BACOVA_02978 0.21 -0.1
56,006 + BACOVA_02978 0.22 -1.4
56,045 - BACOVA_02978 0.25 +0.3
56,063 - BACOVA_02978 0.26 -0.6
56,063 - BACOVA_02978 0.26 -0.1
56,080 + BACOVA_02978 0.27 -0.2
56,080 + BACOVA_02978 0.27 -0.1
56,080 + BACOVA_02978 0.27 -0.7
56,084 - BACOVA_02978 0.27 +0.3
56,092 + BACOVA_02978 0.27 -0.2
56,146 - BACOVA_02978 0.31 -0.2
56,146 - BACOVA_02978 0.31 +0.5
56,153 - BACOVA_02978 0.31 -0.1
56,159 - BACOVA_02978 0.31 -0.8
56,163 + BACOVA_02978 0.32 +0.6
56,231 - BACOVA_02978 0.36 +0.3
56,242 - BACOVA_02978 0.36 +0.6
56,245 + BACOVA_02978 0.36 +0.0
56,246 - BACOVA_02978 0.36 -0.1
56,285 - BACOVA_02978 0.39 -1.6
56,285 - BACOVA_02978 0.39 -0.3
56,333 + BACOVA_02978 0.41 +0.9
56,333 + BACOVA_02978 0.41 -1.0
56,334 - BACOVA_02978 0.42 -0.1
56,372 - BACOVA_02978 0.44 +0.5
56,376 - BACOVA_02978 0.44 +0.2
56,376 - BACOVA_02978 0.44 +0.8
56,376 - BACOVA_02978 0.44 -1.7
56,430 + BACOVA_02978 0.47 +0.8
56,431 - BACOVA_02978 0.47 -0.3
56,448 - BACOVA_02978 0.48 +1.0
56,476 + BACOVA_02978 0.50 +0.0
56,488 - BACOVA_02978 0.51 +0.5
56,488 - BACOVA_02978 0.51 -0.3
56,518 + BACOVA_02978 0.52 -0.0
56,522 - BACOVA_02978 0.53 +0.4
56,522 - BACOVA_02978 0.53 +0.4
56,680 + BACOVA_02978 0.62 -1.5
56,693 - BACOVA_02978 0.63 -0.6
56,695 + BACOVA_02978 0.63 -0.7
56,729 - BACOVA_02978 0.65 -0.3
56,738 - BACOVA_02978 0.65 -3.9
56,738 - BACOVA_02978 0.65 +0.1
56,777 + BACOVA_02978 0.67 -2.4
56,777 + BACOVA_02978 0.67 -0.2
56,778 - BACOVA_02978 0.68 +1.3
56,778 - BACOVA_02978 0.68 +0.1
56,782 + BACOVA_02978 0.68 +1.2
56,783 - BACOVA_02978 0.68 +1.4
56,783 - BACOVA_02978 0.68 +0.1
56,783 - BACOVA_02978 0.68 -0.3
56,783 - BACOVA_02978 0.68 -0.7
56,783 - BACOVA_02978 0.68 +0.3
56,889 + BACOVA_02978 0.74 +0.2
56,910 + BACOVA_02978 0.75 +0.7
56,939 + BACOVA_02978 0.77 -0.1
56,946 - BACOVA_02978 0.77 -0.0
56,946 - BACOVA_02978 0.77 -0.9
56,993 - BACOVA_02978 0.80 -0.3
56,993 - BACOVA_02978 0.80 +0.1
57,027 - BACOVA_02978 0.82 -0.7
57,032 + BACOVA_02978 0.82 -1.0
57,033 - BACOVA_02978 0.82 +0.8
57,082 + BACOVA_02978 0.85 -0.7
57,083 - BACOVA_02978 0.85 -0.2
57,085 + BACOVA_02978 0.86 -0.2
57,171 + +0.0
57,172 - +0.4
57,191 - +0.9
57,304 + -0.3
57,349 + -1.0
57,359 - -0.6
57,362 - -2.0
57,394 - +0.6
57,464 - +0.6
57,487 + +0.3
57,506 + -1.0
57,506 + +0.2
57,506 + -0.5
57,507 - -1.0
57,511 + +0.1
57,517 - -0.3
57,517 - +0.4
57,547 + +0.3
57,548 - -0.2
57,548 - -1.3
57,549 - -1.7
57,559 + BACOVA_02979 0.10 +0.4
57,560 - BACOVA_02979 0.10 +0.7
57,571 + BACOVA_02979 0.11 +0.5
57,572 - BACOVA_02979 0.11 +0.3
57,573 + BACOVA_02979 0.11 -0.3
57,574 - BACOVA_02979 0.11 +0.2
57,604 + BACOVA_02979 0.12 +0.8
57,605 - BACOVA_02979 0.13 +0.6
57,642 + BACOVA_02979 0.14 +1.3
57,642 + BACOVA_02979 0.14 -0.5
57,642 + BACOVA_02979 0.14 +1.4
57,642 + BACOVA_02979 0.14 -0.0
57,646 + BACOVA_02979 0.15 +0.7
57,647 - BACOVA_02979 0.15 +0.4
57,688 + BACOVA_02979 0.17 -0.2
57,700 + BACOVA_02979 0.17 -0.1
57,732 + BACOVA_02979 0.19 +0.6
57,733 - BACOVA_02979 0.19 -0.5
57,733 - BACOVA_02979 0.19 +0.8
57,733 - BACOVA_02979 0.19 -0.0
57,814 + BACOVA_02979 0.23 +1.0
57,899 - BACOVA_02979 0.27 +0.3
57,900 + BACOVA_02979 0.27 -1.0
57,900 + BACOVA_02979 0.27 -0.2
57,900 + BACOVA_02979 0.27 -1.3
57,900 + BACOVA_02979 0.27 -2.0
57,901 - BACOVA_02979 0.27 -1.2
58,025 - BACOVA_02979 0.33 -0.0
58,075 + BACOVA_02979 0.36 -0.5
58,075 + BACOVA_02979 0.36 +0.1
58,076 - BACOVA_02979 0.36 -0.7
58,076 - BACOVA_02979 0.36 -0.7
58,076 - BACOVA_02979 0.36 -3.1
58,138 + BACOVA_02979 0.39 +1.0
58,138 + BACOVA_02979 0.39 +0.3
58,139 - BACOVA_02979 0.39 +0.4
58,165 + BACOVA_02979 0.40 -2.8
58,175 - BACOVA_02979 0.41 -0.1
58,196 - BACOVA_02979 0.42 -0.4
58,225 - BACOVA_02979 0.43 +1.2
58,247 - BACOVA_02979 0.44 +0.6
58,251 + BACOVA_02979 0.44 +0.3
58,273 + BACOVA_02979 0.45 -0.4
58,274 - BACOVA_02979 0.45 +1.8
58,274 - BACOVA_02979 0.45 -0.0
58,276 + BACOVA_02979 0.46 +0.2
58,329 + BACOVA_02979 0.48 +0.9

Or see this region's nucleotide sequence