Experiment: Wheat Arabinoxylan; filtered 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01358 and BACOVA_01359 are separated by 0 nucleotides BACOVA_01359 and BACOVA_01360 are separated by 20 nucleotides BACOVA_01360 and BACOVA_01361 are separated by 182 nucleotides
BACOVA_01358: BACOVA_01358 - polyprenyl synthetase, at 23,222 to 24,196
_01358
BACOVA_01359: BACOVA_01359 - hypothetical protein, at 24,197 to 24,877
_01359
BACOVA_01360: BACOVA_01360 - hypothetical protein, at 24,898 to 25,089
_01360
BACOVA_01361: BACOVA_01361 - deoxyribose-phosphate aldolase, at 25,272 to 26,174
_01361
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.234 kb on - strand at 24.236 kb on + strand at 24.237 kb on - strand at 24.281 kb on + strand, within BACOVA_01359 at 24.323 kb on + strand, within BACOVA_01359 at 24.333 kb on - strand, within BACOVA_01359 at 24.351 kb on - strand, within BACOVA_01359 at 24.351 kb on - strand, within BACOVA_01359 at 24.440 kb on - strand, within BACOVA_01359 at 24.461 kb on + strand, within BACOVA_01359 at 24.469 kb on + strand, within BACOVA_01359 at 24.469 kb on + strand, within BACOVA_01359 at 24.469 kb on + strand, within BACOVA_01359 at 24.470 kb on - strand, within BACOVA_01359 at 24.470 kb on - strand, within BACOVA_01359 at 24.470 kb on - strand, within BACOVA_01359 at 24.470 kb on - strand, within BACOVA_01359 at 24.473 kb on - strand, within BACOVA_01359 at 24.495 kb on + strand, within BACOVA_01359 at 24.595 kb on + strand, within BACOVA_01359 at 24.602 kb on + strand, within BACOVA_01359 at 24.616 kb on + strand, within BACOVA_01359 at 24.616 kb on + strand, within BACOVA_01359 at 24.624 kb on + strand, within BACOVA_01359 at 24.663 kb on - strand, within BACOVA_01359 at 24.747 kb on - strand, within BACOVA_01359 at 24.759 kb on + strand, within BACOVA_01359 at 24.759 kb on + strand, within BACOVA_01359 at 24.760 kb on - strand, within BACOVA_01359 at 24.784 kb on + strand, within BACOVA_01359 at 24.854 kb on + strand at 24.854 kb on + strand at 24.855 kb on - strand at 24.865 kb on + strand at 24.866 kb on - strand at 24.866 kb on - strand at 24.866 kb on - strand at 24.880 kb on + strand at 24.881 kb on - strand at 24.881 kb on - strand at 24.958 kb on + strand, within BACOVA_01360 at 24.958 kb on + strand, within BACOVA_01360 at 24.959 kb on - strand, within BACOVA_01360 at 24.961 kb on - strand, within BACOVA_01360 at 24.991 kb on + strand, within BACOVA_01360 at 24.992 kb on - strand, within BACOVA_01360 at 24.992 kb on - strand, within BACOVA_01360 at 25.002 kb on + strand, within BACOVA_01360 at 25.002 kb on + strand, within BACOVA_01360 at 25.006 kb on + strand, within BACOVA_01360 at 25.006 kb on + strand, within BACOVA_01360 at 25.006 kb on + strand, within BACOVA_01360 at 25.007 kb on - strand, within BACOVA_01360 at 25.007 kb on - strand, within BACOVA_01360 at 25.007 kb on - strand, within BACOVA_01360 at 25.108 kb on + strand at 25.148 kb on - strand at 25.175 kb on + strand at 25.175 kb on + strand at 25.246 kb on - strand at 25.256 kb on + strand at 25.256 kb on + strand at 25.257 kb on - strand at 25.377 kb on + strand, within BACOVA_01361 at 25.399 kb on + strand, within BACOVA_01361 at 25.399 kb on + strand, within BACOVA_01361 at 25.570 kb on + strand, within BACOVA_01361 at 25.571 kb on - strand, within BACOVA_01361 at 25.578 kb on + strand, within BACOVA_01361 at 25.615 kb on - strand, within BACOVA_01361 at 25.627 kb on + strand, within BACOVA_01361 at 25.678 kb on - strand, within BACOVA_01361 at 25.736 kb on + strand, within BACOVA_01361 at 25.736 kb on + strand, within BACOVA_01361 at 25.737 kb on - strand, within BACOVA_01361 at 25.767 kb on + strand, within BACOVA_01361 at 25.768 kb on - strand, within BACOVA_01361 at 25.837 kb on - strand, within BACOVA_01361 at 25.893 kb on + strand, within BACOVA_01361 at 25.893 kb on + strand, within BACOVA_01361 at 25.893 kb on + strand, within BACOVA_01361 at 25.894 kb on - strand, within BACOVA_01361 at 25.894 kb on - strand, within BACOVA_01361 at 25.895 kb on + strand, within BACOVA_01361 at 25.928 kb on - strand, within BACOVA_01361 at 25.988 kb on + strand, within BACOVA_01361 at 25.989 kb on - strand, within BACOVA_01361 at 25.991 kb on + strand, within BACOVA_01361 at 26.001 kb on - strand, within BACOVA_01361 at 26.013 kb on - strand, within BACOVA_01361
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/mL (C) remove 24,234 - +0.9 24,236 + -0.1 24,237 - -0.8 24,281 + BACOVA_01359 0.12 +1.2 24,323 + BACOVA_01359 0.19 -0.2 24,333 - BACOVA_01359 0.20 +0.9 24,351 - BACOVA_01359 0.23 +0.2 24,351 - BACOVA_01359 0.23 -1.0 24,440 - BACOVA_01359 0.36 -1.5 24,461 + BACOVA_01359 0.39 -0.3 24,469 + BACOVA_01359 0.40 -1.0 24,469 + BACOVA_01359 0.40 -0.1 24,469 + BACOVA_01359 0.40 +0.1 24,470 - BACOVA_01359 0.40 -0.4 24,470 - BACOVA_01359 0.40 +1.2 24,470 - BACOVA_01359 0.40 +1.8 24,470 - BACOVA_01359 0.40 +0.0 24,473 - BACOVA_01359 0.41 -0.8 24,495 + BACOVA_01359 0.44 +0.3 24,595 + BACOVA_01359 0.58 -0.6 24,602 + BACOVA_01359 0.59 -0.7 24,616 + BACOVA_01359 0.62 -0.1 24,616 + BACOVA_01359 0.62 -0.5 24,624 + BACOVA_01359 0.63 -0.4 24,663 - BACOVA_01359 0.68 +0.0 24,747 - BACOVA_01359 0.81 -0.2 24,759 + BACOVA_01359 0.83 +0.0 24,759 + BACOVA_01359 0.83 +0.2 24,760 - BACOVA_01359 0.83 -2.0 24,784 + BACOVA_01359 0.86 -0.2 24,854 + -0.8 24,854 + -0.5 24,855 - +0.2 24,865 + -0.5 24,866 - -0.8 24,866 - +0.9 24,866 - -1.7 24,880 + -0.1 24,881 - +0.9 24,881 - -0.1 24,958 + BACOVA_01360 0.31 -0.7 24,958 + BACOVA_01360 0.31 -0.5 24,959 - BACOVA_01360 0.32 +0.6 24,961 - BACOVA_01360 0.33 -2.5 24,991 + BACOVA_01360 0.48 +0.4 24,992 - BACOVA_01360 0.49 -0.5 24,992 - BACOVA_01360 0.49 +0.2 25,002 + BACOVA_01360 0.54 +0.1 25,002 + BACOVA_01360 0.54 +0.9 25,006 + BACOVA_01360 0.56 -0.1 25,006 + BACOVA_01360 0.56 +0.3 25,006 + BACOVA_01360 0.56 -1.1 25,007 - BACOVA_01360 0.57 +1.0 25,007 - BACOVA_01360 0.57 +0.1 25,007 - BACOVA_01360 0.57 -0.5 25,108 + +0.9 25,148 - -0.6 25,175 + -0.0 25,175 + -1.1 25,246 - -0.7 25,256 + -0.4 25,256 + +2.0 25,257 - -1.4 25,377 + BACOVA_01361 0.12 -1.7 25,399 + BACOVA_01361 0.14 -2.3 25,399 + BACOVA_01361 0.14 -2.6 25,570 + BACOVA_01361 0.33 -0.5 25,571 - BACOVA_01361 0.33 +0.1 25,578 + BACOVA_01361 0.34 -0.9 25,615 - BACOVA_01361 0.38 -2.1 25,627 + BACOVA_01361 0.39 -3.6 25,678 - BACOVA_01361 0.45 -2.7 25,736 + BACOVA_01361 0.51 -3.3 25,736 + BACOVA_01361 0.51 -2.1 25,737 - BACOVA_01361 0.51 -0.7 25,767 + BACOVA_01361 0.55 -3.1 25,768 - BACOVA_01361 0.55 -1.4 25,837 - BACOVA_01361 0.63 -2.5 25,893 + BACOVA_01361 0.69 -0.0 25,893 + BACOVA_01361 0.69 -1.8 25,893 + BACOVA_01361 0.69 -3.1 25,894 - BACOVA_01361 0.69 -0.7 25,894 - BACOVA_01361 0.69 -0.6 25,895 + BACOVA_01361 0.69 -2.6 25,928 - BACOVA_01361 0.73 -1.2 25,988 + BACOVA_01361 0.79 -3.1 25,989 - BACOVA_01361 0.79 -0.8 25,991 + BACOVA_01361 0.80 -1.5 26,001 - BACOVA_01361 0.81 -1.0 26,013 - BACOVA_01361 0.82 -1.2
Or see this region's nucleotide sequence