Experiment: Wheat Arabinoxylan; filtered 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00886 and BACOVA_00887 are separated by 21 nucleotides BACOVA_00887 and BACOVA_00888 are separated by 18 nucleotides
BACOVA_00886: BACOVA_00886 - hypothetical protein, at 10,021 to 11,595
_00886
BACOVA_00887: BACOVA_00887 - hypothetical protein, at 11,617 to 12,363
_00887
BACOVA_00888: BACOVA_00888 - hypothetical protein, at 12,382 to 14,055
_00888
Position (kb) 11
12
13 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 10.618 kb on + strand, within BACOVA_00886 at 10.618 kb on + strand, within BACOVA_00886 at 10.619 kb on - strand, within BACOVA_00886 at 10.639 kb on + strand, within BACOVA_00886 at 10.728 kb on + strand, within BACOVA_00886 at 10.729 kb on - strand, within BACOVA_00886 at 10.765 kb on - strand, within BACOVA_00886 at 10.765 kb on - strand, within BACOVA_00886 at 10.799 kb on - strand, within BACOVA_00886 at 10.815 kb on + strand, within BACOVA_00886 at 10.816 kb on - strand, within BACOVA_00886 at 10.908 kb on + strand, within BACOVA_00886 at 10.909 kb on - strand, within BACOVA_00886 at 10.909 kb on - strand, within BACOVA_00886 at 10.930 kb on + strand, within BACOVA_00886 at 10.931 kb on - strand, within BACOVA_00886 at 10.940 kb on + strand, within BACOVA_00886 at 10.948 kb on - strand, within BACOVA_00886 at 10.951 kb on + strand, within BACOVA_00886 at 10.951 kb on + strand, within BACOVA_00886 at 10.953 kb on + strand, within BACOVA_00886 at 10.954 kb on - strand, within BACOVA_00886 at 10.963 kb on - strand, within BACOVA_00886 at 10.968 kb on + strand, within BACOVA_00886 at 10.969 kb on - strand, within BACOVA_00886 at 10.969 kb on - strand, within BACOVA_00886 at 10.985 kb on + strand, within BACOVA_00886 at 10.985 kb on + strand, within BACOVA_00886 at 10.985 kb on + strand, within BACOVA_00886 at 10.986 kb on - strand, within BACOVA_00886 at 11.005 kb on - strand, within BACOVA_00886 at 11.006 kb on + strand, within BACOVA_00886 at 11.006 kb on + strand, within BACOVA_00886 at 11.006 kb on + strand, within BACOVA_00886 at 11.007 kb on - strand, within BACOVA_00886 at 11.015 kb on + strand, within BACOVA_00886 at 11.017 kb on + strand, within BACOVA_00886 at 11.067 kb on + strand, within BACOVA_00886 at 11.074 kb on - strand, within BACOVA_00886 at 11.149 kb on - strand, within BACOVA_00886 at 11.163 kb on + strand, within BACOVA_00886 at 11.164 kb on - strand, within BACOVA_00886 at 11.175 kb on - strand, within BACOVA_00886 at 11.185 kb on - strand, within BACOVA_00886 at 11.257 kb on - strand, within BACOVA_00886 at 11.269 kb on - strand, within BACOVA_00886 at 11.275 kb on - strand, within BACOVA_00886 at 11.289 kb on - strand, within BACOVA_00886 at 11.293 kb on + strand, within BACOVA_00886 at 11.293 kb on + strand, within BACOVA_00886 at 11.294 kb on - strand, within BACOVA_00886 at 11.294 kb on - strand, within BACOVA_00886 at 11.294 kb on - strand, within BACOVA_00886 at 11.294 kb on - strand, within BACOVA_00886 at 11.294 kb on - strand, within BACOVA_00886 at 11.294 kb on - strand, within BACOVA_00886 at 11.294 kb on - strand, within BACOVA_00886 at 11.298 kb on - strand, within BACOVA_00886 at 11.311 kb on - strand, within BACOVA_00886 at 11.314 kb on + strand, within BACOVA_00886 at 11.314 kb on + strand, within BACOVA_00886 at 11.315 kb on - strand, within BACOVA_00886 at 11.320 kb on - strand, within BACOVA_00886 at 11.320 kb on - strand, within BACOVA_00886 at 11.325 kb on + strand, within BACOVA_00886 at 11.345 kb on - strand, within BACOVA_00886 at 11.373 kb on + strand, within BACOVA_00886 at 11.373 kb on + strand, within BACOVA_00886 at 11.374 kb on - strand, within BACOVA_00886 at 11.374 kb on - strand, within BACOVA_00886 at 11.374 kb on - strand, within BACOVA_00886 at 11.377 kb on - strand, within BACOVA_00886 at 11.377 kb on - strand, within BACOVA_00886 at 11.481 kb on - strand at 11.481 kb on - strand at 11.483 kb on - strand at 11.590 kb on - strand at 11.594 kb on - strand at 11.615 kb on - strand at 11.635 kb on + strand at 11.638 kb on - strand at 11.639 kb on + strand at 11.639 kb on + strand at 11.670 kb on + strand at 11.694 kb on - strand, within BACOVA_00887 at 11.703 kb on + strand, within BACOVA_00887 at 11.704 kb on - strand, within BACOVA_00887 at 11.719 kb on + strand, within BACOVA_00887 at 11.720 kb on - strand, within BACOVA_00887 at 11.721 kb on + strand, within BACOVA_00887 at 11.762 kb on + strand, within BACOVA_00887 at 11.801 kb on + strand, within BACOVA_00887 at 11.802 kb on - strand, within BACOVA_00887 at 11.805 kb on - strand, within BACOVA_00887 at 11.831 kb on + strand, within BACOVA_00887 at 11.840 kb on + strand, within BACOVA_00887 at 11.865 kb on - strand, within BACOVA_00887 at 11.900 kb on - strand, within BACOVA_00887 at 11.900 kb on - strand, within BACOVA_00887 at 11.921 kb on + strand, within BACOVA_00887 at 11.921 kb on + strand, within BACOVA_00887 at 11.922 kb on - strand, within BACOVA_00887 at 11.972 kb on - strand, within BACOVA_00887 at 12.066 kb on + strand, within BACOVA_00887 at 12.067 kb on - strand, within BACOVA_00887 at 12.075 kb on - strand, within BACOVA_00887 at 12.078 kb on + strand, within BACOVA_00887 at 12.078 kb on + strand, within BACOVA_00887 at 12.079 kb on - strand, within BACOVA_00887 at 12.137 kb on - strand, within BACOVA_00887 at 12.137 kb on - strand, within BACOVA_00887 at 12.169 kb on + strand, within BACOVA_00887 at 12.173 kb on - strand, within BACOVA_00887 at 12.224 kb on + strand, within BACOVA_00887 at 12.240 kb on + strand, within BACOVA_00887 at 12.246 kb on + strand, within BACOVA_00887 at 12.256 kb on - strand, within BACOVA_00887 at 12.279 kb on + strand, within BACOVA_00887 at 12.292 kb on + strand at 12.293 kb on - strand at 12.337 kb on - strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.400 kb on + strand at 12.401 kb on - strand at 12.407 kb on + strand at 12.414 kb on - strand at 12.419 kb on + strand at 12.450 kb on + strand at 12.460 kb on + strand at 12.461 kb on - strand at 12.461 kb on - strand at 12.468 kb on + strand at 12.468 kb on + strand at 12.496 kb on - strand at 12.499 kb on - strand at 12.504 kb on + strand at 12.531 kb on - strand at 12.531 kb on - strand at 12.542 kb on + strand at 12.546 kb on + strand at 12.546 kb on + strand at 12.555 kb on + strand, within BACOVA_00888 at 12.555 kb on + strand, within BACOVA_00888 at 12.555 kb on + strand, within BACOVA_00888 at 12.556 kb on - strand, within BACOVA_00888 at 12.599 kb on - strand, within BACOVA_00888 at 12.611 kb on + strand, within BACOVA_00888 at 12.647 kb on - strand, within BACOVA_00888 at 12.706 kb on - strand, within BACOVA_00888 at 12.722 kb on - strand, within BACOVA_00888 at 12.789 kb on - strand, within BACOVA_00888 at 12.822 kb on + strand, within BACOVA_00888 at 12.823 kb on - strand, within BACOVA_00888 at 12.832 kb on + strand, within BACOVA_00888 at 12.832 kb on + strand, within BACOVA_00888 at 12.832 kb on + strand, within BACOVA_00888 at 12.833 kb on - strand, within BACOVA_00888 at 12.876 kb on - strand, within BACOVA_00888 at 12.876 kb on - strand, within BACOVA_00888 at 12.886 kb on - strand, within BACOVA_00888 at 12.914 kb on + strand, within BACOVA_00888 at 12.970 kb on - strand, within BACOVA_00888 at 12.970 kb on - strand, within BACOVA_00888 at 12.970 kb on - strand, within BACOVA_00888 at 12.986 kb on + strand, within BACOVA_00888 at 12.995 kb on + strand, within BACOVA_00888 at 12.996 kb on - strand, within BACOVA_00888 at 12.996 kb on - strand, within BACOVA_00888 at 12.996 kb on - strand, within BACOVA_00888 at 12.998 kb on - strand, within BACOVA_00888 at 13.067 kb on - strand, within BACOVA_00888 at 13.069 kb on - strand, within BACOVA_00888 at 13.118 kb on + strand, within BACOVA_00888 at 13.119 kb on - strand, within BACOVA_00888 at 13.136 kb on - strand, within BACOVA_00888 at 13.136 kb on - strand, within BACOVA_00888 at 13.170 kb on + strand, within BACOVA_00888 at 13.170 kb on + strand, within BACOVA_00888 at 13.171 kb on - strand, within BACOVA_00888 at 13.174 kb on + strand, within BACOVA_00888 at 13.174 kb on + strand, within BACOVA_00888 at 13.175 kb on - strand, within BACOVA_00888 at 13.175 kb on - strand, within BACOVA_00888 at 13.175 kb on - strand, within BACOVA_00888 at 13.219 kb on + strand, within BACOVA_00888 at 13.220 kb on - strand, within BACOVA_00888 at 13.220 kb on - strand, within BACOVA_00888 at 13.220 kb on - strand, within BACOVA_00888 at 13.220 kb on - strand, within BACOVA_00888 at 13.221 kb on + strand, within BACOVA_00888 at 13.222 kb on - strand, within BACOVA_00888 at 13.222 kb on - strand, within BACOVA_00888 at 13.222 kb on - strand, within BACOVA_00888 at 13.222 kb on - strand, within BACOVA_00888 at 13.227 kb on + strand, within BACOVA_00888 at 13.228 kb on - strand, within BACOVA_00888 at 13.244 kb on - strand, within BACOVA_00888 at 13.245 kb on + strand, within BACOVA_00888 at 13.262 kb on + strand, within BACOVA_00888 at 13.262 kb on + strand, within BACOVA_00888 at 13.262 kb on + strand, within BACOVA_00888 at 13.262 kb on + strand, within BACOVA_00888 at 13.264 kb on + strand, within BACOVA_00888 at 13.271 kb on + strand, within BACOVA_00888 at 13.326 kb on + strand, within BACOVA_00888 at 13.337 kb on + strand, within BACOVA_00888 at 13.337 kb on + strand, within BACOVA_00888 at 13.342 kb on - strand, within BACOVA_00888
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/mL (C) remove 10,618 + BACOVA_00886 0.38 -0.4 10,618 + BACOVA_00886 0.38 +0.3 10,619 - BACOVA_00886 0.38 +1.2 10,639 + BACOVA_00886 0.39 +0.5 10,728 + BACOVA_00886 0.45 +0.6 10,729 - BACOVA_00886 0.45 -0.4 10,765 - BACOVA_00886 0.47 -0.5 10,765 - BACOVA_00886 0.47 -0.6 10,799 - BACOVA_00886 0.49 -0.0 10,815 + BACOVA_00886 0.50 +0.2 10,816 - BACOVA_00886 0.50 +0.9 10,908 + BACOVA_00886 0.56 -0.4 10,909 - BACOVA_00886 0.56 +0.2 10,909 - BACOVA_00886 0.56 +1.2 10,930 + BACOVA_00886 0.58 -0.5 10,931 - BACOVA_00886 0.58 +1.1 10,940 + BACOVA_00886 0.58 -0.6 10,948 - BACOVA_00886 0.59 +0.8 10,951 + BACOVA_00886 0.59 +0.8 10,951 + BACOVA_00886 0.59 -0.1 10,953 + BACOVA_00886 0.59 -0.3 10,954 - BACOVA_00886 0.59 +0.2 10,963 - BACOVA_00886 0.60 -0.3 10,968 + BACOVA_00886 0.60 -1.2 10,969 - BACOVA_00886 0.60 +1.1 10,969 - BACOVA_00886 0.60 +0.6 10,985 + BACOVA_00886 0.61 +0.1 10,985 + BACOVA_00886 0.61 +1.1 10,985 + BACOVA_00886 0.61 -0.2 10,986 - BACOVA_00886 0.61 +0.4 11,005 - BACOVA_00886 0.62 +0.5 11,006 + BACOVA_00886 0.63 +0.0 11,006 + BACOVA_00886 0.63 +0.7 11,006 + BACOVA_00886 0.63 -2.1 11,007 - BACOVA_00886 0.63 +0.6 11,015 + BACOVA_00886 0.63 +0.9 11,017 + BACOVA_00886 0.63 -1.8 11,067 + BACOVA_00886 0.66 +0.4 11,074 - BACOVA_00886 0.67 +0.4 11,149 - BACOVA_00886 0.72 +0.8 11,163 + BACOVA_00886 0.73 +1.2 11,164 - BACOVA_00886 0.73 -0.4 11,175 - BACOVA_00886 0.73 -0.2 11,185 - BACOVA_00886 0.74 -0.3 11,257 - BACOVA_00886 0.78 +0.4 11,269 - BACOVA_00886 0.79 -0.3 11,275 - BACOVA_00886 0.80 -0.1 11,289 - BACOVA_00886 0.81 +1.7 11,293 + BACOVA_00886 0.81 +0.3 11,293 + BACOVA_00886 0.81 -0.3 11,294 - BACOVA_00886 0.81 +1.2 11,294 - BACOVA_00886 0.81 +0.4 11,294 - BACOVA_00886 0.81 +0.7 11,294 - BACOVA_00886 0.81 +1.4 11,294 - BACOVA_00886 0.81 +0.4 11,294 - BACOVA_00886 0.81 +0.4 11,294 - BACOVA_00886 0.81 +0.2 11,298 - BACOVA_00886 0.81 -0.4 11,311 - BACOVA_00886 0.82 +0.5 11,314 + BACOVA_00886 0.82 +0.3 11,314 + BACOVA_00886 0.82 +0.4 11,315 - BACOVA_00886 0.82 +0.4 11,320 - BACOVA_00886 0.82 +0.4 11,320 - BACOVA_00886 0.82 -0.6 11,325 + BACOVA_00886 0.83 +1.3 11,345 - BACOVA_00886 0.84 +0.4 11,373 + BACOVA_00886 0.86 -0.8 11,373 + BACOVA_00886 0.86 +0.4 11,374 - BACOVA_00886 0.86 +0.5 11,374 - BACOVA_00886 0.86 -0.3 11,374 - BACOVA_00886 0.86 -0.2 11,377 - BACOVA_00886 0.86 +0.9 11,377 - BACOVA_00886 0.86 +0.4 11,481 - +0.9 11,481 - +0.9 11,483 - -1.2 11,590 - +0.5 11,594 - -1.1 11,615 - -0.9 11,635 + -0.9 11,638 - +0.7 11,639 + +0.4 11,639 + +1.1 11,670 + -1.1 11,694 - BACOVA_00887 0.10 +0.3 11,703 + BACOVA_00887 0.12 +0.2 11,704 - BACOVA_00887 0.12 -2.2 11,719 + BACOVA_00887 0.14 -0.1 11,720 - BACOVA_00887 0.14 -0.5 11,721 + BACOVA_00887 0.14 +0.4 11,762 + BACOVA_00887 0.19 +1.7 11,801 + BACOVA_00887 0.25 -0.2 11,802 - BACOVA_00887 0.25 -0.3 11,805 - BACOVA_00887 0.25 +0.8 11,831 + BACOVA_00887 0.29 +1.4 11,840 + BACOVA_00887 0.30 -0.9 11,865 - BACOVA_00887 0.33 +0.1 11,900 - BACOVA_00887 0.38 -0.7 11,900 - BACOVA_00887 0.38 -1.1 11,921 + BACOVA_00887 0.41 +0.6 11,921 + BACOVA_00887 0.41 -1.1 11,922 - BACOVA_00887 0.41 -0.5 11,972 - BACOVA_00887 0.48 +0.8 12,066 + BACOVA_00887 0.60 +2.5 12,067 - BACOVA_00887 0.60 -1.1 12,075 - BACOVA_00887 0.61 -0.0 12,078 + BACOVA_00887 0.62 +0.7 12,078 + BACOVA_00887 0.62 -0.8 12,079 - BACOVA_00887 0.62 -0.9 12,137 - BACOVA_00887 0.70 +0.5 12,137 - BACOVA_00887 0.70 -1.2 12,169 + BACOVA_00887 0.74 -1.0 12,173 - BACOVA_00887 0.74 -0.6 12,224 + BACOVA_00887 0.81 -0.1 12,240 + BACOVA_00887 0.83 +0.9 12,246 + BACOVA_00887 0.84 -1.4 12,256 - BACOVA_00887 0.86 -1.0 12,279 + BACOVA_00887 0.89 -0.6 12,292 + +0.3 12,293 - -2.1 12,337 - +0.0 12,382 - +0.4 12,382 - -0.3 12,400 + -0.5 12,401 - -1.4 12,407 + +1.2 12,414 - +0.5 12,419 + +0.2 12,450 + +0.6 12,460 + +0.7 12,461 - -0.9 12,461 - +0.3 12,468 + -0.8 12,468 + -0.3 12,496 - +0.6 12,499 - -1.0 12,504 + +0.7 12,531 - -0.3 12,531 - +0.2 12,542 + +0.1 12,546 + -0.3 12,546 + +0.2 12,555 + BACOVA_00888 0.10 +0.2 12,555 + BACOVA_00888 0.10 +0.4 12,555 + BACOVA_00888 0.10 +0.9 12,556 - BACOVA_00888 0.10 -0.4 12,599 - BACOVA_00888 0.13 -0.4 12,611 + BACOVA_00888 0.14 -0.5 12,647 - BACOVA_00888 0.16 -1.6 12,706 - BACOVA_00888 0.19 -0.4 12,722 - BACOVA_00888 0.20 -0.4 12,789 - BACOVA_00888 0.24 -1.3 12,822 + BACOVA_00888 0.26 +0.4 12,823 - BACOVA_00888 0.26 +0.3 12,832 + BACOVA_00888 0.27 -1.1 12,832 + BACOVA_00888 0.27 -0.4 12,832 + BACOVA_00888 0.27 +0.4 12,833 - BACOVA_00888 0.27 +1.2 12,876 - BACOVA_00888 0.30 -0.9 12,876 - BACOVA_00888 0.30 -1.0 12,886 - BACOVA_00888 0.30 +0.2 12,914 + BACOVA_00888 0.32 +0.6 12,970 - BACOVA_00888 0.35 -0.0 12,970 - BACOVA_00888 0.35 +0.4 12,970 - BACOVA_00888 0.35 +0.6 12,986 + BACOVA_00888 0.36 +0.4 12,995 + BACOVA_00888 0.37 -0.5 12,996 - BACOVA_00888 0.37 -0.7 12,996 - BACOVA_00888 0.37 -4.4 12,996 - BACOVA_00888 0.37 -0.1 12,998 - BACOVA_00888 0.37 +0.0 13,067 - BACOVA_00888 0.41 +0.6 13,069 - BACOVA_00888 0.41 +0.1 13,118 + BACOVA_00888 0.44 +0.3 13,119 - BACOVA_00888 0.44 -0.9 13,136 - BACOVA_00888 0.45 +0.8 13,136 - BACOVA_00888 0.45 -0.8 13,170 + BACOVA_00888 0.47 -0.4 13,170 + BACOVA_00888 0.47 +0.7 13,171 - BACOVA_00888 0.47 +0.4 13,174 + BACOVA_00888 0.47 +0.5 13,174 + BACOVA_00888 0.47 -0.7 13,175 - BACOVA_00888 0.47 +0.2 13,175 - BACOVA_00888 0.47 +0.9 13,175 - BACOVA_00888 0.47 -1.4 13,219 + BACOVA_00888 0.50 +0.4 13,220 - BACOVA_00888 0.50 -0.1 13,220 - BACOVA_00888 0.50 -1.0 13,220 - BACOVA_00888 0.50 +0.1 13,220 - BACOVA_00888 0.50 +0.9 13,221 + BACOVA_00888 0.50 +0.7 13,222 - BACOVA_00888 0.50 +0.0 13,222 - BACOVA_00888 0.50 -0.6 13,222 - BACOVA_00888 0.50 +0.2 13,222 - BACOVA_00888 0.50 -0.7 13,227 + BACOVA_00888 0.50 +1.1 13,228 - BACOVA_00888 0.51 +0.0 13,244 - BACOVA_00888 0.51 -0.5 13,245 + BACOVA_00888 0.52 -2.5 13,262 + BACOVA_00888 0.53 -0.8 13,262 + BACOVA_00888 0.53 +1.1 13,262 + BACOVA_00888 0.53 -0.1 13,262 + BACOVA_00888 0.53 +0.1 13,264 + BACOVA_00888 0.53 -0.1 13,271 + BACOVA_00888 0.53 +0.8 13,326 + BACOVA_00888 0.56 +0.5 13,337 + BACOVA_00888 0.57 +0.2 13,337 + BACOVA_00888 0.57 +0.4 13,342 - BACOVA_00888 0.57 +0.1
Or see this region's nucleotide sequence