Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00852

Experiment: hib MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00850 and OHPLBJKB_00851 are separated by 78 nucleotidesOHPLBJKB_00851 and OHPLBJKB_00852 are separated by 237 nucleotidesOHPLBJKB_00852 and OHPLBJKB_00853 are separated by 22 nucleotidesOHPLBJKB_00853 and OHPLBJKB_00854 are separated by 254 nucleotides OHPLBJKB_00850: OHPLBJKB_00850 - Murein hydrolase activator NlpD, at 883,496 to 884,251 _00850 OHPLBJKB_00851: OHPLBJKB_00851 - tRNA-Gly, at 884,330 to 884,403 _00851 OHPLBJKB_00852: OHPLBJKB_00852 - hypothetical protein, at 884,641 to 886,185 _00852 OHPLBJKB_00853: OHPLBJKB_00853 - hypothetical protein, at 886,208 to 886,486 _00853 OHPLBJKB_00854: OHPLBJKB_00854 - IS3 family transposase ISEhe3, at 886,741 to 887,355 _00854 Position (kb) 884 885 886 887Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 883.644 kb on + strand, within OHPLBJKB_00850at 883.645 kb on - strand, within OHPLBJKB_00850at 883.645 kb on - strand, within OHPLBJKB_00850at 883.645 kb on - strand, within OHPLBJKB_00850at 883.645 kb on - strand, within OHPLBJKB_00850at 883.645 kb on - strand, within OHPLBJKB_00850at 883.651 kb on + strand, within OHPLBJKB_00850at 883.651 kb on + strand, within OHPLBJKB_00850at 883.652 kb on - strand, within OHPLBJKB_00850at 883.677 kb on + strand, within OHPLBJKB_00850at 883.678 kb on - strand, within OHPLBJKB_00850at 883.678 kb on - strand, within OHPLBJKB_00850at 883.715 kb on + strand, within OHPLBJKB_00850at 883.716 kb on - strand, within OHPLBJKB_00850at 883.716 kb on - strand, within OHPLBJKB_00850at 883.740 kb on + strand, within OHPLBJKB_00850at 883.762 kb on + strand, within OHPLBJKB_00850at 883.763 kb on - strand, within OHPLBJKB_00850at 883.769 kb on - strand, within OHPLBJKB_00850at 883.771 kb on + strand, within OHPLBJKB_00850at 883.771 kb on + strand, within OHPLBJKB_00850at 883.771 kb on + strand, within OHPLBJKB_00850at 883.772 kb on - strand, within OHPLBJKB_00850at 883.772 kb on - strand, within OHPLBJKB_00850at 883.772 kb on - strand, within OHPLBJKB_00850at 883.777 kb on + strand, within OHPLBJKB_00850at 883.777 kb on + strand, within OHPLBJKB_00850at 883.777 kb on + strand, within OHPLBJKB_00850at 883.778 kb on - strand, within OHPLBJKB_00850at 883.816 kb on + strand, within OHPLBJKB_00850at 883.897 kb on + strand, within OHPLBJKB_00850at 883.942 kb on + strand, within OHPLBJKB_00850at 883.942 kb on + strand, within OHPLBJKB_00850at 883.943 kb on - strand, within OHPLBJKB_00850at 883.966 kb on + strand, within OHPLBJKB_00850at 883.966 kb on + strand, within OHPLBJKB_00850at 883.966 kb on + strand, within OHPLBJKB_00850at 883.966 kb on + strand, within OHPLBJKB_00850at 883.966 kb on + strand, within OHPLBJKB_00850at 883.966 kb on + strand, within OHPLBJKB_00850at 883.966 kb on + strand, within OHPLBJKB_00850at 883.967 kb on - strand, within OHPLBJKB_00850at 883.967 kb on - strand, within OHPLBJKB_00850at 883.967 kb on - strand, within OHPLBJKB_00850at 883.971 kb on - strand, within OHPLBJKB_00850at 883.971 kb on - strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.997 kb on + strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 883.998 kb on - strand, within OHPLBJKB_00850at 884.057 kb on + strand, within OHPLBJKB_00850at 884.058 kb on - strand, within OHPLBJKB_00850at 884.058 kb on - strand, within OHPLBJKB_00850at 884.058 kb on - strand, within OHPLBJKB_00850at 884.058 kb on - strand, within OHPLBJKB_00850at 884.058 kb on - strand, within OHPLBJKB_00850at 884.069 kb on + strand, within OHPLBJKB_00850at 884.095 kb on - strand, within OHPLBJKB_00850at 884.098 kb on + strand, within OHPLBJKB_00850at 884.099 kb on - strand, within OHPLBJKB_00850at 884.099 kb on - strand, within OHPLBJKB_00850at 884.099 kb on - strand, within OHPLBJKB_00850at 884.216 kb on + strandat 884.216 kb on + strandat 884.216 kb on + strandat 884.217 kb on - strandat 884.217 kb on - strandat 884.290 kb on - strandat 884.300 kb on + strandat 884.307 kb on + strandat 884.308 kb on - strandat 884.309 kb on + strandat 884.337 kb on + strandat 884.372 kb on - strand, within OHPLBJKB_00851at 884.374 kb on - strand, within OHPLBJKB_00851at 884.374 kb on - strand, within OHPLBJKB_00851at 884.457 kb on - strandat 884.503 kb on + strandat 884.504 kb on - strandat 884.592 kb on + strandat 884.597 kb on - strandat 884.604 kb on + strandat 884.604 kb on + strandat 884.660 kb on + strandat 884.682 kb on - strandat 884.800 kb on - strand, within OHPLBJKB_00852at 884.950 kb on - strand, within OHPLBJKB_00852at 884.962 kb on - strand, within OHPLBJKB_00852at 884.999 kb on - strand, within OHPLBJKB_00852at 885.021 kb on + strand, within OHPLBJKB_00852at 885.022 kb on - strand, within OHPLBJKB_00852at 885.034 kb on + strand, within OHPLBJKB_00852at 885.034 kb on + strand, within OHPLBJKB_00852at 885.034 kb on + strand, within OHPLBJKB_00852at 885.035 kb on - strand, within OHPLBJKB_00852at 885.035 kb on - strand, within OHPLBJKB_00852at 885.037 kb on - strand, within OHPLBJKB_00852at 885.044 kb on + strand, within OHPLBJKB_00852at 885.044 kb on + strand, within OHPLBJKB_00852at 885.045 kb on - strand, within OHPLBJKB_00852at 885.048 kb on - strand, within OHPLBJKB_00852at 885.048 kb on - strand, within OHPLBJKB_00852at 885.063 kb on + strand, within OHPLBJKB_00852at 885.063 kb on + strand, within OHPLBJKB_00852at 885.103 kb on + strand, within OHPLBJKB_00852at 885.103 kb on + strand, within OHPLBJKB_00852at 885.103 kb on + strand, within OHPLBJKB_00852at 885.103 kb on + strand, within OHPLBJKB_00852at 885.104 kb on - strand, within OHPLBJKB_00852at 885.104 kb on - strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.105 kb on + strand, within OHPLBJKB_00852at 885.106 kb on - strand, within OHPLBJKB_00852at 885.106 kb on - strand, within OHPLBJKB_00852at 885.106 kb on - strand, within OHPLBJKB_00852at 885.106 kb on - strand, within OHPLBJKB_00852at 885.106 kb on - strand, within OHPLBJKB_00852at 885.106 kb on - strand, within OHPLBJKB_00852at 885.106 kb on - strand, within OHPLBJKB_00852at 885.106 kb on - strand, within OHPLBJKB_00852at 885.111 kb on + strand, within OHPLBJKB_00852at 885.148 kb on - strand, within OHPLBJKB_00852at 885.271 kb on - strand, within OHPLBJKB_00852at 885.271 kb on - strand, within OHPLBJKB_00852at 885.287 kb on + strand, within OHPLBJKB_00852at 885.287 kb on + strand, within OHPLBJKB_00852at 885.287 kb on + strand, within OHPLBJKB_00852at 885.288 kb on - strand, within OHPLBJKB_00852at 885.310 kb on - strand, within OHPLBJKB_00852at 885.311 kb on + strand, within OHPLBJKB_00852at 885.311 kb on + strand, within OHPLBJKB_00852at 885.311 kb on + strand, within OHPLBJKB_00852at 885.311 kb on + strand, within OHPLBJKB_00852at 885.311 kb on + strand, within OHPLBJKB_00852at 885.311 kb on + strand, within OHPLBJKB_00852at 885.311 kb on + strand, within OHPLBJKB_00852at 885.312 kb on - strand, within OHPLBJKB_00852at 885.312 kb on - strand, within OHPLBJKB_00852at 885.312 kb on - strand, within OHPLBJKB_00852at 885.312 kb on - strand, within OHPLBJKB_00852at 885.331 kb on - strand, within OHPLBJKB_00852at 885.333 kb on + strand, within OHPLBJKB_00852at 885.333 kb on + strand, within OHPLBJKB_00852at 885.333 kb on + strand, within OHPLBJKB_00852at 885.333 kb on + strand, within OHPLBJKB_00852at 885.334 kb on - strand, within OHPLBJKB_00852at 885.334 kb on - strand, within OHPLBJKB_00852at 885.416 kb on - strand, within OHPLBJKB_00852at 885.512 kb on + strand, within OHPLBJKB_00852at 885.618 kb on + strand, within OHPLBJKB_00852at 885.635 kb on + strand, within OHPLBJKB_00852at 885.654 kb on - strand, within OHPLBJKB_00852at 885.720 kb on + strand, within OHPLBJKB_00852at 885.720 kb on + strand, within OHPLBJKB_00852at 885.721 kb on - strand, within OHPLBJKB_00852at 885.727 kb on - strand, within OHPLBJKB_00852at 885.727 kb on - strand, within OHPLBJKB_00852at 885.752 kb on + strand, within OHPLBJKB_00852at 885.834 kb on + strand, within OHPLBJKB_00852at 886.066 kb on - strandat 886.117 kb on + strandat 886.117 kb on + strandat 886.117 kb on + strandat 886.117 kb on + strandat 886.117 kb on + strandat 886.117 kb on + strandat 886.119 kb on + strandat 886.120 kb on - strandat 886.123 kb on + strandat 886.123 kb on + strandat 886.124 kb on - strandat 886.124 kb on - strandat 886.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
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883,644 + OHPLBJKB_00850 0.20 +1.7
883,645 - OHPLBJKB_00850 0.20 +2.1
883,645 - OHPLBJKB_00850 0.20 +0.1
883,645 - OHPLBJKB_00850 0.20 +0.9
883,645 - OHPLBJKB_00850 0.20 +3.4
883,645 - OHPLBJKB_00850 0.20 -0.8
883,651 + OHPLBJKB_00850 0.21 -2.0
883,651 + OHPLBJKB_00850 0.21 -1.6
883,652 - OHPLBJKB_00850 0.21 +0.1
883,677 + OHPLBJKB_00850 0.24 -2.1
883,678 - OHPLBJKB_00850 0.24 +1.3
883,678 - OHPLBJKB_00850 0.24 -2.6
883,715 + OHPLBJKB_00850 0.29 -0.4
883,716 - OHPLBJKB_00850 0.29 -2.7
883,716 - OHPLBJKB_00850 0.29 +1.4
883,740 + OHPLBJKB_00850 0.32 -1.1
883,762 + OHPLBJKB_00850 0.35 +1.0
883,763 - OHPLBJKB_00850 0.35 +0.9
883,769 - OHPLBJKB_00850 0.36 -1.4
883,771 + OHPLBJKB_00850 0.36 +1.0
883,771 + OHPLBJKB_00850 0.36 +1.0
883,771 + OHPLBJKB_00850 0.36 +2.0
883,772 - OHPLBJKB_00850 0.37 +0.9
883,772 - OHPLBJKB_00850 0.37 -0.2
883,772 - OHPLBJKB_00850 0.37 +0.0
883,777 + OHPLBJKB_00850 0.37 -2.3
883,777 + OHPLBJKB_00850 0.37 -2.6
883,777 + OHPLBJKB_00850 0.37 -0.3
883,778 - OHPLBJKB_00850 0.37 -2.1
883,816 + OHPLBJKB_00850 0.42 -2.7
883,897 + OHPLBJKB_00850 0.53 +0.4
883,942 + OHPLBJKB_00850 0.59 -0.8
883,942 + OHPLBJKB_00850 0.59 +2.6
883,943 - OHPLBJKB_00850 0.59 -1.9
883,966 + OHPLBJKB_00850 0.62 +2.2
883,966 + OHPLBJKB_00850 0.62 -4.5
883,966 + OHPLBJKB_00850 0.62 -0.2
883,966 + OHPLBJKB_00850 0.62 +0.2
883,966 + OHPLBJKB_00850 0.62 -0.8
883,966 + OHPLBJKB_00850 0.62 -2.1
883,966 + OHPLBJKB_00850 0.62 +0.0
883,967 - OHPLBJKB_00850 0.62 +0.4
883,967 - OHPLBJKB_00850 0.62 +0.9
883,967 - OHPLBJKB_00850 0.62 -0.6
883,971 - OHPLBJKB_00850 0.63 -2.4
883,971 - OHPLBJKB_00850 0.63 +2.2
883,997 + OHPLBJKB_00850 0.66 -1.4
883,997 + OHPLBJKB_00850 0.66 +1.4
883,997 + OHPLBJKB_00850 0.66 +1.0
883,997 + OHPLBJKB_00850 0.66 -0.1
883,997 + OHPLBJKB_00850 0.66 -0.3
883,997 + OHPLBJKB_00850 0.66 -0.8
883,997 + OHPLBJKB_00850 0.66 -1.6
883,997 + OHPLBJKB_00850 0.66 -0.0
883,997 + OHPLBJKB_00850 0.66 -0.8
883,997 + OHPLBJKB_00850 0.66 -2.9
883,997 + OHPLBJKB_00850 0.66 -0.5
883,998 - OHPLBJKB_00850 0.66 -1.9
883,998 - OHPLBJKB_00850 0.66 +1.1
883,998 - OHPLBJKB_00850 0.66 -1.4
883,998 - OHPLBJKB_00850 0.66 -2.4
883,998 - OHPLBJKB_00850 0.66 -0.5
883,998 - OHPLBJKB_00850 0.66 -0.9
883,998 - OHPLBJKB_00850 0.66 -1.9
883,998 - OHPLBJKB_00850 0.66 +1.4
883,998 - OHPLBJKB_00850 0.66 -0.9
883,998 - OHPLBJKB_00850 0.66 -3.1
883,998 - OHPLBJKB_00850 0.66 -0.6
883,998 - OHPLBJKB_00850 0.66 +0.1
883,998 - OHPLBJKB_00850 0.66 -0.5
884,057 + OHPLBJKB_00850 0.74 +2.2
884,058 - OHPLBJKB_00850 0.74 -0.5
884,058 - OHPLBJKB_00850 0.74 -2.8
884,058 - OHPLBJKB_00850 0.74 -0.0
884,058 - OHPLBJKB_00850 0.74 +0.1
884,058 - OHPLBJKB_00850 0.74 -1.1
884,069 + OHPLBJKB_00850 0.76 +4.0
884,095 - OHPLBJKB_00850 0.79 +1.1
884,098 + OHPLBJKB_00850 0.80 -0.6
884,099 - OHPLBJKB_00850 0.80 +1.3
884,099 - OHPLBJKB_00850 0.80 -0.5
884,099 - OHPLBJKB_00850 0.80 -2.8
884,216 + +1.8
884,216 + -0.6
884,216 + +0.9
884,217 - +1.8
884,217 - -0.6
884,290 - -3.3
884,300 + +0.5
884,307 + +0.7
884,308 - -2.2
884,309 + -1.0
884,337 + +1.4
884,372 - OHPLBJKB_00851 0.57 +1.7
884,374 - OHPLBJKB_00851 0.59 +0.5
884,374 - OHPLBJKB_00851 0.59 +0.3
884,457 - +0.4
884,503 + +1.3
884,504 - +0.2
884,592 + -2.1
884,597 - +1.4
884,604 + +1.4
884,604 + +0.7
884,660 + -0.0
884,682 - +1.6
884,800 - OHPLBJKB_00852 0.10 +0.9
884,950 - OHPLBJKB_00852 0.20 +0.2
884,962 - OHPLBJKB_00852 0.21 +0.9
884,999 - OHPLBJKB_00852 0.23 -0.3
885,021 + OHPLBJKB_00852 0.25 +0.1
885,022 - OHPLBJKB_00852 0.25 +1.7
885,034 + OHPLBJKB_00852 0.25 +1.2
885,034 + OHPLBJKB_00852 0.25 -1.3
885,034 + OHPLBJKB_00852 0.25 +1.3
885,035 - OHPLBJKB_00852 0.26 +0.7
885,035 - OHPLBJKB_00852 0.26 +2.0
885,037 - OHPLBJKB_00852 0.26 +1.3
885,044 + OHPLBJKB_00852 0.26 -2.4
885,044 + OHPLBJKB_00852 0.26 -2.8
885,045 - OHPLBJKB_00852 0.26 -0.6
885,048 - OHPLBJKB_00852 0.26 +0.6
885,048 - OHPLBJKB_00852 0.26 +0.2
885,063 + OHPLBJKB_00852 0.27 +0.7
885,063 + OHPLBJKB_00852 0.27 +0.2
885,103 + OHPLBJKB_00852 0.30 -2.1
885,103 + OHPLBJKB_00852 0.30 -0.6
885,103 + OHPLBJKB_00852 0.30 +0.9
885,103 + OHPLBJKB_00852 0.30 -0.9
885,104 - OHPLBJKB_00852 0.30 +2.7
885,104 - OHPLBJKB_00852 0.30 -2.4
885,105 + OHPLBJKB_00852 0.30 +6.7
885,105 + OHPLBJKB_00852 0.30 -0.8
885,105 + OHPLBJKB_00852 0.30 -0.1
885,105 + OHPLBJKB_00852 0.30 -1.6
885,105 + OHPLBJKB_00852 0.30 +2.8
885,105 + OHPLBJKB_00852 0.30 +1.6
885,105 + OHPLBJKB_00852 0.30 +0.8
885,105 + OHPLBJKB_00852 0.30 -1.9
885,105 + OHPLBJKB_00852 0.30 -2.6
885,105 + OHPLBJKB_00852 0.30 +0.2
885,106 - OHPLBJKB_00852 0.30 +0.5
885,106 - OHPLBJKB_00852 0.30 +0.2
885,106 - OHPLBJKB_00852 0.30 -0.9
885,106 - OHPLBJKB_00852 0.30 -2.1
885,106 - OHPLBJKB_00852 0.30 +1.4
885,106 - OHPLBJKB_00852 0.30 +1.5
885,106 - OHPLBJKB_00852 0.30 +1.3
885,106 - OHPLBJKB_00852 0.30 +1.1
885,111 + OHPLBJKB_00852 0.30 -2.4
885,148 - OHPLBJKB_00852 0.33 -1.7
885,271 - OHPLBJKB_00852 0.41 -1.1
885,271 - OHPLBJKB_00852 0.41 -1.4
885,287 + OHPLBJKB_00852 0.42 -1.8
885,287 + OHPLBJKB_00852 0.42 +1.8
885,287 + OHPLBJKB_00852 0.42 -0.6
885,288 - OHPLBJKB_00852 0.42 +2.4
885,310 - OHPLBJKB_00852 0.43 +0.4
885,311 + OHPLBJKB_00852 0.43 +1.8
885,311 + OHPLBJKB_00852 0.43 +5.4
885,311 + OHPLBJKB_00852 0.43 -0.7
885,311 + OHPLBJKB_00852 0.43 -0.7
885,311 + OHPLBJKB_00852 0.43 -2.6
885,311 + OHPLBJKB_00852 0.43 +2.4
885,311 + OHPLBJKB_00852 0.43 +1.3
885,312 - OHPLBJKB_00852 0.43 +1.3
885,312 - OHPLBJKB_00852 0.43 -0.3
885,312 - OHPLBJKB_00852 0.43 +0.0
885,312 - OHPLBJKB_00852 0.43 -1.0
885,331 - OHPLBJKB_00852 0.45 -3.2
885,333 + OHPLBJKB_00852 0.45 -0.9
885,333 + OHPLBJKB_00852 0.45 +0.4
885,333 + OHPLBJKB_00852 0.45 -0.6
885,333 + OHPLBJKB_00852 0.45 +1.0
885,334 - OHPLBJKB_00852 0.45 -0.7
885,334 - OHPLBJKB_00852 0.45 -1.5
885,416 - OHPLBJKB_00852 0.50 +0.6
885,512 + OHPLBJKB_00852 0.56 -2.0
885,618 + OHPLBJKB_00852 0.63 +0.4
885,635 + OHPLBJKB_00852 0.64 +0.2
885,654 - OHPLBJKB_00852 0.66 +1.1
885,720 + OHPLBJKB_00852 0.70 +1.4
885,720 + OHPLBJKB_00852 0.70 +1.1
885,721 - OHPLBJKB_00852 0.70 -0.8
885,727 - OHPLBJKB_00852 0.70 -0.8
885,727 - OHPLBJKB_00852 0.70 -2.3
885,752 + OHPLBJKB_00852 0.72 -1.4
885,834 + OHPLBJKB_00852 0.77 -1.1
886,066 - +0.2
886,117 + +1.1
886,117 + -1.5
886,117 + -2.3
886,117 + +0.4
886,117 + -1.1
886,117 + -1.8
886,119 + +0.9
886,120 - +1.9
886,123 + -1.0
886,123 + -2.2
886,124 - +0.1
886,124 - -0.7
886,124 - -1.7

Or see this region's nucleotide sequence