Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00789

Experiment: hib MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00787 and OHPLBJKB_00788 overlap by 4 nucleotidesOHPLBJKB_00788 and OHPLBJKB_00789 are separated by 284 nucleotidesOHPLBJKB_00789 and OHPLBJKB_00790 are separated by 49 nucleotides OHPLBJKB_00787: OHPLBJKB_00787 - Fumarase E, at 808,195 to 808,704 _00787 OHPLBJKB_00788: OHPLBJKB_00788 - Pantothenate kinase, at 808,701 to 809,414 _00788 OHPLBJKB_00789: OHPLBJKB_00789 - D-erythrose-4-phosphate dehydrogenase, at 809,699 to 810,718 _00789 OHPLBJKB_00790: OHPLBJKB_00790 - Phosphoglycerate kinase, at 810,768 to 811,931 _00790 Position (kb) 809 810 811Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 808.714 kb on + strandat 808.715 kb on - strandat 808.735 kb on + strandat 808.771 kb on + strandat 808.772 kb on - strandat 808.775 kb on + strand, within OHPLBJKB_00788at 808.775 kb on + strand, within OHPLBJKB_00788at 808.775 kb on + strand, within OHPLBJKB_00788at 808.775 kb on + strand, within OHPLBJKB_00788at 808.776 kb on - strand, within OHPLBJKB_00788at 808.776 kb on - strand, within OHPLBJKB_00788at 808.804 kb on + strand, within OHPLBJKB_00788at 808.805 kb on - strand, within OHPLBJKB_00788at 808.814 kb on - strand, within OHPLBJKB_00788at 808.830 kb on - strand, within OHPLBJKB_00788at 808.959 kb on + strand, within OHPLBJKB_00788at 808.959 kb on + strand, within OHPLBJKB_00788at 808.960 kb on - strand, within OHPLBJKB_00788at 808.960 kb on - strand, within OHPLBJKB_00788at 808.960 kb on - strand, within OHPLBJKB_00788at 808.960 kb on - strand, within OHPLBJKB_00788at 808.964 kb on + strand, within OHPLBJKB_00788at 808.964 kb on + strand, within OHPLBJKB_00788at 808.965 kb on - strand, within OHPLBJKB_00788at 808.965 kb on - strand, within OHPLBJKB_00788at 808.965 kb on - strand, within OHPLBJKB_00788at 809.069 kb on + strand, within OHPLBJKB_00788at 809.069 kb on + strand, within OHPLBJKB_00788at 809.069 kb on + strand, within OHPLBJKB_00788at 809.070 kb on - strand, within OHPLBJKB_00788at 809.070 kb on - strand, within OHPLBJKB_00788at 809.082 kb on + strand, within OHPLBJKB_00788at 809.083 kb on - strand, within OHPLBJKB_00788at 809.219 kb on + strand, within OHPLBJKB_00788at 809.258 kb on + strand, within OHPLBJKB_00788at 809.264 kb on + strand, within OHPLBJKB_00788at 809.265 kb on - strand, within OHPLBJKB_00788at 809.282 kb on - strand, within OHPLBJKB_00788at 809.294 kb on - strand, within OHPLBJKB_00788at 809.294 kb on - strand, within OHPLBJKB_00788at 809.307 kb on + strand, within OHPLBJKB_00788at 809.307 kb on + strand, within OHPLBJKB_00788at 809.307 kb on + strand, within OHPLBJKB_00788at 809.308 kb on - strand, within OHPLBJKB_00788at 809.308 kb on - strand, within OHPLBJKB_00788at 809.308 kb on - strand, within OHPLBJKB_00788at 809.351 kb on + strandat 809.372 kb on - strandat 809.372 kb on - strandat 809.374 kb on + strandat 809.375 kb on - strandat 809.375 kb on - strandat 809.397 kb on + strandat 809.440 kb on + strandat 809.444 kb on - strandat 809.444 kb on - strandat 809.505 kb on + strandat 809.505 kb on + strandat 809.505 kb on + strandat 809.505 kb on + strandat 809.505 kb on + strandat 809.505 kb on + strandat 809.505 kb on + strandat 809.506 kb on - strandat 809.539 kb on + strandat 809.556 kb on - strandat 809.597 kb on + strandat 809.597 kb on + strandat 809.625 kb on + strandat 809.626 kb on - strandat 809.626 kb on - strandat 809.654 kb on - strandat 809.654 kb on - strandat 809.698 kb on + strandat 809.698 kb on + strandat 809.698 kb on + strandat 809.698 kb on + strandat 809.698 kb on + strandat 809.699 kb on - strandat 809.719 kb on - strandat 809.762 kb on + strandat 809.762 kb on + strandat 809.762 kb on + strandat 809.762 kb on + strandat 809.762 kb on + strandat 809.763 kb on - strandat 809.763 kb on - strandat 809.763 kb on - strandat 809.789 kb on - strandat 809.846 kb on + strand, within OHPLBJKB_00789at 809.847 kb on - strand, within OHPLBJKB_00789at 809.847 kb on - strand, within OHPLBJKB_00789at 809.880 kb on + strand, within OHPLBJKB_00789at 809.929 kb on - strand, within OHPLBJKB_00789at 809.982 kb on + strand, within OHPLBJKB_00789at 809.983 kb on - strand, within OHPLBJKB_00789at 809.983 kb on - strand, within OHPLBJKB_00789at 809.983 kb on - strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.004 kb on - strand, within OHPLBJKB_00789at 810.004 kb on - strand, within OHPLBJKB_00789at 810.004 kb on - strand, within OHPLBJKB_00789at 810.151 kb on + strand, within OHPLBJKB_00789at 810.177 kb on + strand, within OHPLBJKB_00789at 810.198 kb on + strand, within OHPLBJKB_00789at 810.278 kb on + strand, within OHPLBJKB_00789at 810.279 kb on - strand, within OHPLBJKB_00789at 810.337 kb on + strand, within OHPLBJKB_00789at 810.338 kb on - strand, within OHPLBJKB_00789at 810.417 kb on + strand, within OHPLBJKB_00789at 810.417 kb on + strand, within OHPLBJKB_00789at 810.463 kb on - strand, within OHPLBJKB_00789at 810.520 kb on + strand, within OHPLBJKB_00789at 810.520 kb on + strand, within OHPLBJKB_00789at 810.522 kb on + strand, within OHPLBJKB_00789at 810.522 kb on + strand, within OHPLBJKB_00789at 810.555 kb on + strand, within OHPLBJKB_00789at 810.690 kb on + strandat 810.690 kb on + strandat 810.694 kb on + strandat 810.694 kb on + strandat 810.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
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808,714 + -0.2
808,715 - -1.0
808,735 + +1.0
808,771 + +0.0
808,772 - +0.8
808,775 + OHPLBJKB_00788 0.10 -1.2
808,775 + OHPLBJKB_00788 0.10 +0.0
808,775 + OHPLBJKB_00788 0.10 +0.1
808,775 + OHPLBJKB_00788 0.10 +1.7
808,776 - OHPLBJKB_00788 0.11 -1.2
808,776 - OHPLBJKB_00788 0.11 +0.6
808,804 + OHPLBJKB_00788 0.14 -0.1
808,805 - OHPLBJKB_00788 0.15 -1.8
808,814 - OHPLBJKB_00788 0.16 -1.9
808,830 - OHPLBJKB_00788 0.18 -0.5
808,959 + OHPLBJKB_00788 0.36 +0.5
808,959 + OHPLBJKB_00788 0.36 -0.5
808,960 - OHPLBJKB_00788 0.36 +0.7
808,960 - OHPLBJKB_00788 0.36 -0.0
808,960 - OHPLBJKB_00788 0.36 -2.0
808,960 - OHPLBJKB_00788 0.36 -0.1
808,964 + OHPLBJKB_00788 0.37 -2.1
808,964 + OHPLBJKB_00788 0.37 -2.2
808,965 - OHPLBJKB_00788 0.37 -2.6
808,965 - OHPLBJKB_00788 0.37 -1.8
808,965 - OHPLBJKB_00788 0.37 -1.0
809,069 + OHPLBJKB_00788 0.52 -0.0
809,069 + OHPLBJKB_00788 0.52 +1.1
809,069 + OHPLBJKB_00788 0.52 -1.1
809,070 - OHPLBJKB_00788 0.52 -0.7
809,070 - OHPLBJKB_00788 0.52 +1.4
809,082 + OHPLBJKB_00788 0.53 +0.1
809,083 - OHPLBJKB_00788 0.54 -1.1
809,219 + OHPLBJKB_00788 0.73 -0.5
809,258 + OHPLBJKB_00788 0.78 -0.2
809,264 + OHPLBJKB_00788 0.79 +2.0
809,265 - OHPLBJKB_00788 0.79 +0.2
809,282 - OHPLBJKB_00788 0.81 +1.4
809,294 - OHPLBJKB_00788 0.83 +0.4
809,294 - OHPLBJKB_00788 0.83 +0.5
809,307 + OHPLBJKB_00788 0.85 +0.5
809,307 + OHPLBJKB_00788 0.85 +0.5
809,307 + OHPLBJKB_00788 0.85 -0.2
809,308 - OHPLBJKB_00788 0.85 -3.3
809,308 - OHPLBJKB_00788 0.85 -0.9
809,308 - OHPLBJKB_00788 0.85 -1.3
809,351 + +1.2
809,372 - +0.3
809,372 - -1.2
809,374 + +0.6
809,375 - -0.7
809,375 - -2.1
809,397 + -0.7
809,440 + +1.2
809,444 - -3.0
809,444 - +2.1
809,505 + -1.6
809,505 + +0.5
809,505 + -0.3
809,505 + +1.1
809,505 + -0.2
809,505 + +0.4
809,505 + +0.2
809,506 - -0.7
809,539 + -0.2
809,556 - +0.3
809,597 + +1.2
809,597 + -0.6
809,625 + +0.4
809,626 - -1.8
809,626 - -2.9
809,654 - -3.5
809,654 - -0.5
809,698 + -2.4
809,698 + +0.7
809,698 + +1.8
809,698 + +1.1
809,698 + -0.0
809,699 - +2.5
809,719 - -0.1
809,762 + -1.7
809,762 + -0.7
809,762 + -3.1
809,762 + -2.0
809,762 + +0.5
809,763 - -0.9
809,763 - +1.0
809,763 - +0.5
809,789 - -0.1
809,846 + OHPLBJKB_00789 0.14 -2.2
809,847 - OHPLBJKB_00789 0.15 +0.5
809,847 - OHPLBJKB_00789 0.15 -0.9
809,880 + OHPLBJKB_00789 0.18 -0.1
809,929 - OHPLBJKB_00789 0.23 +1.8
809,982 + OHPLBJKB_00789 0.28 -0.0
809,983 - OHPLBJKB_00789 0.28 -0.1
809,983 - OHPLBJKB_00789 0.28 -2.0
809,983 - OHPLBJKB_00789 0.28 +0.3
810,003 + OHPLBJKB_00789 0.30 -0.6
810,003 + OHPLBJKB_00789 0.30 -0.1
810,003 + OHPLBJKB_00789 0.30 -1.9
810,003 + OHPLBJKB_00789 0.30 -0.6
810,004 - OHPLBJKB_00789 0.30 +0.8
810,004 - OHPLBJKB_00789 0.30 +0.1
810,004 - OHPLBJKB_00789 0.30 -1.6
810,151 + OHPLBJKB_00789 0.44 -0.1
810,177 + OHPLBJKB_00789 0.47 -0.4
810,198 + OHPLBJKB_00789 0.49 +1.4
810,278 + OHPLBJKB_00789 0.57 +0.1
810,279 - OHPLBJKB_00789 0.57 +0.6
810,337 + OHPLBJKB_00789 0.63 +0.5
810,338 - OHPLBJKB_00789 0.63 +1.4
810,417 + OHPLBJKB_00789 0.70 -0.9
810,417 + OHPLBJKB_00789 0.70 -0.6
810,463 - OHPLBJKB_00789 0.75 -1.7
810,520 + OHPLBJKB_00789 0.80 -0.5
810,520 + OHPLBJKB_00789 0.80 +2.8
810,522 + OHPLBJKB_00789 0.81 -1.0
810,522 + OHPLBJKB_00789 0.81 +0.1
810,555 + OHPLBJKB_00789 0.84 +0.9
810,690 + +1.3
810,690 + -1.0
810,694 + +0.5
810,694 + +2.1
810,700 + +0.8

Or see this region's nucleotide sequence