Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00762

Experiment: hib MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00761 and OHPLBJKB_00762 overlap by 8 nucleotidesOHPLBJKB_00762 and OHPLBJKB_00763 are separated by 7 nucleotidesOHPLBJKB_00763 and OHPLBJKB_00764 overlap by 4 nucleotidesOHPLBJKB_00764 and OHPLBJKB_00765 are separated by 17 nucleotides OHPLBJKB_00761: OHPLBJKB_00761 - Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR, at 783,580 to 784,716 _00761 OHPLBJKB_00762: OHPLBJKB_00762 - dITP/XTP pyrophosphatase, at 784,709 to 785,302 _00762 OHPLBJKB_00763: OHPLBJKB_00763 - hypothetical protein, at 785,310 to 785,600 _00763 OHPLBJKB_00764: OHPLBJKB_00764 - hypothetical protein, at 785,597 to 786,163 _00764 OHPLBJKB_00765: OHPLBJKB_00765 - Pyridoxal phosphate homeostasis protein, at 786,181 to 786,885 _00765 Position (kb) 784 785 786Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 783.728 kb on + strand, within OHPLBJKB_00761at 783.728 kb on + strand, within OHPLBJKB_00761at 783.834 kb on - strand, within OHPLBJKB_00761at 783.846 kb on + strand, within OHPLBJKB_00761at 783.876 kb on + strand, within OHPLBJKB_00761at 783.938 kb on + strand, within OHPLBJKB_00761at 783.938 kb on + strand, within OHPLBJKB_00761at 783.939 kb on - strand, within OHPLBJKB_00761at 783.939 kb on - strand, within OHPLBJKB_00761at 783.981 kb on - strand, within OHPLBJKB_00761at 784.036 kb on + strand, within OHPLBJKB_00761at 784.037 kb on - strand, within OHPLBJKB_00761at 784.037 kb on - strand, within OHPLBJKB_00761at 784.037 kb on - strand, within OHPLBJKB_00761at 784.057 kb on + strand, within OHPLBJKB_00761at 784.057 kb on + strand, within OHPLBJKB_00761at 784.057 kb on + strand, within OHPLBJKB_00761at 784.057 kb on + strand, within OHPLBJKB_00761at 784.058 kb on - strand, within OHPLBJKB_00761at 784.058 kb on - strand, within OHPLBJKB_00761at 784.058 kb on - strand, within OHPLBJKB_00761at 784.058 kb on - strand, within OHPLBJKB_00761at 784.058 kb on - strand, within OHPLBJKB_00761at 784.114 kb on - strand, within OHPLBJKB_00761at 784.136 kb on + strand, within OHPLBJKB_00761at 784.177 kb on + strand, within OHPLBJKB_00761at 784.178 kb on - strand, within OHPLBJKB_00761at 784.236 kb on + strand, within OHPLBJKB_00761at 784.242 kb on + strand, within OHPLBJKB_00761at 784.242 kb on + strand, within OHPLBJKB_00761at 784.242 kb on + strand, within OHPLBJKB_00761at 784.243 kb on - strand, within OHPLBJKB_00761at 784.246 kb on + strand, within OHPLBJKB_00761at 784.247 kb on - strand, within OHPLBJKB_00761at 784.247 kb on - strand, within OHPLBJKB_00761at 784.247 kb on - strand, within OHPLBJKB_00761at 784.252 kb on + strand, within OHPLBJKB_00761at 784.253 kb on - strand, within OHPLBJKB_00761at 784.402 kb on + strand, within OHPLBJKB_00761at 784.408 kb on - strand, within OHPLBJKB_00761at 784.425 kb on + strand, within OHPLBJKB_00761at 784.428 kb on + strand, within OHPLBJKB_00761at 784.540 kb on + strand, within OHPLBJKB_00761at 784.540 kb on + strand, within OHPLBJKB_00761at 784.541 kb on - strand, within OHPLBJKB_00761at 784.541 kb on - strand, within OHPLBJKB_00761at 784.541 kb on - strand, within OHPLBJKB_00761at 784.601 kb on + strand, within OHPLBJKB_00761at 784.601 kb on + strand, within OHPLBJKB_00761at 784.602 kb on - strand, within OHPLBJKB_00761at 784.689 kb on - strandat 784.717 kb on + strandat 784.717 kb on + strandat 784.722 kb on - strandat 784.817 kb on + strand, within OHPLBJKB_00762at 784.818 kb on - strand, within OHPLBJKB_00762at 784.871 kb on - strand, within OHPLBJKB_00762at 784.871 kb on - strand, within OHPLBJKB_00762at 784.932 kb on + strand, within OHPLBJKB_00762at 784.932 kb on + strand, within OHPLBJKB_00762at 784.933 kb on - strand, within OHPLBJKB_00762at 784.933 kb on - strand, within OHPLBJKB_00762at 784.933 kb on - strand, within OHPLBJKB_00762at 784.933 kb on - strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.935 kb on - strand, within OHPLBJKB_00762at 785.082 kb on - strand, within OHPLBJKB_00762at 785.302 kb on + strandat 785.303 kb on - strandat 785.303 kb on - strandat 785.307 kb on + strandat 785.308 kb on - strandat 785.311 kb on + strandat 785.311 kb on + strandat 785.311 kb on + strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.315 kb on + strandat 785.315 kb on + strandat 785.316 kb on - strandat 785.319 kb on + strandat 785.320 kb on - strandat 785.400 kb on + strand, within OHPLBJKB_00763at 785.400 kb on + strand, within OHPLBJKB_00763at 785.401 kb on - strand, within OHPLBJKB_00763at 785.401 kb on - strand, within OHPLBJKB_00763at 785.401 kb on - strand, within OHPLBJKB_00763at 785.499 kb on - strand, within OHPLBJKB_00763at 785.515 kb on - strand, within OHPLBJKB_00763at 785.525 kb on + strand, within OHPLBJKB_00763at 785.525 kb on + strand, within OHPLBJKB_00763at 785.525 kb on + strand, within OHPLBJKB_00763at 785.526 kb on - strand, within OHPLBJKB_00763at 785.552 kb on + strand, within OHPLBJKB_00763at 785.552 kb on + strand, within OHPLBJKB_00763at 785.552 kb on + strand, within OHPLBJKB_00763at 785.553 kb on - strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.555 kb on - strand, within OHPLBJKB_00763at 785.555 kb on - strand, within OHPLBJKB_00763at 785.555 kb on - strand, within OHPLBJKB_00763at 785.555 kb on - strand, within OHPLBJKB_00763at 785.562 kb on + strand, within OHPLBJKB_00763at 785.583 kb on - strandat 785.583 kb on - strandat 785.590 kb on - strandat 785.601 kb on - strandat 785.601 kb on - strandat 785.629 kb on + strandat 785.649 kb on - strandat 785.676 kb on + strand, within OHPLBJKB_00764at 785.676 kb on + strand, within OHPLBJKB_00764at 785.676 kb on + strand, within OHPLBJKB_00764at 785.676 kb on + strand, within OHPLBJKB_00764at 785.676 kb on + strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.781 kb on + strand, within OHPLBJKB_00764at 785.781 kb on + strand, within OHPLBJKB_00764at 785.782 kb on - strand, within OHPLBJKB_00764at 785.795 kb on - strand, within OHPLBJKB_00764at 785.953 kb on + strand, within OHPLBJKB_00764at 785.954 kb on - strand, within OHPLBJKB_00764at 785.955 kb on + strand, within OHPLBJKB_00764at 785.955 kb on + strand, within OHPLBJKB_00764at 785.955 kb on + strand, within OHPLBJKB_00764at 785.956 kb on - strand, within OHPLBJKB_00764at 785.956 kb on - strand, within OHPLBJKB_00764at 786.036 kb on - strand, within OHPLBJKB_00764at 786.045 kb on - strand, within OHPLBJKB_00764at 786.045 kb on - strand, within OHPLBJKB_00764at 786.101 kb on + strand, within OHPLBJKB_00764at 786.101 kb on + strand, within OHPLBJKB_00764at 786.104 kb on + strand, within OHPLBJKB_00764at 786.119 kb on - strandat 786.120 kb on + strandat 786.120 kb on + strandat 786.120 kb on + strandat 786.120 kb on + strandat 786.121 kb on - strandat 786.121 kb on - strandat 786.121 kb on - strandat 786.157 kb on + strandat 786.158 kb on - strandat 786.189 kb on + strandat 786.240 kb on + strandat 786.241 kb on - strandat 786.241 kb on - strandat 786.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
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783,728 + OHPLBJKB_00761 0.13 -2.4
783,728 + OHPLBJKB_00761 0.13 -1.9
783,834 - OHPLBJKB_00761 0.22 +0.3
783,846 + OHPLBJKB_00761 0.23 -0.1
783,876 + OHPLBJKB_00761 0.26 -1.9
783,938 + OHPLBJKB_00761 0.31 -2.5
783,938 + OHPLBJKB_00761 0.31 -1.7
783,939 - OHPLBJKB_00761 0.32 -0.7
783,939 - OHPLBJKB_00761 0.32 -2.0
783,981 - OHPLBJKB_00761 0.35 -0.7
784,036 + OHPLBJKB_00761 0.40 +0.3
784,037 - OHPLBJKB_00761 0.40 -0.9
784,037 - OHPLBJKB_00761 0.40 -1.8
784,037 - OHPLBJKB_00761 0.40 +0.7
784,057 + OHPLBJKB_00761 0.42 +2.8
784,057 + OHPLBJKB_00761 0.42 -1.1
784,057 + OHPLBJKB_00761 0.42 -0.0
784,057 + OHPLBJKB_00761 0.42 -0.4
784,058 - OHPLBJKB_00761 0.42 -0.3
784,058 - OHPLBJKB_00761 0.42 +0.5
784,058 - OHPLBJKB_00761 0.42 -2.3
784,058 - OHPLBJKB_00761 0.42 -0.7
784,058 - OHPLBJKB_00761 0.42 -0.5
784,114 - OHPLBJKB_00761 0.47 -1.1
784,136 + OHPLBJKB_00761 0.49 -1.3
784,177 + OHPLBJKB_00761 0.53 +0.9
784,178 - OHPLBJKB_00761 0.53 -1.1
784,236 + OHPLBJKB_00761 0.58 +0.2
784,242 + OHPLBJKB_00761 0.58 -0.9
784,242 + OHPLBJKB_00761 0.58 -1.9
784,242 + OHPLBJKB_00761 0.58 -0.4
784,243 - OHPLBJKB_00761 0.58 -2.3
784,246 + OHPLBJKB_00761 0.59 -2.8
784,247 - OHPLBJKB_00761 0.59 +0.8
784,247 - OHPLBJKB_00761 0.59 -1.7
784,247 - OHPLBJKB_00761 0.59 -2.2
784,252 + OHPLBJKB_00761 0.59 -0.5
784,253 - OHPLBJKB_00761 0.59 +0.4
784,402 + OHPLBJKB_00761 0.72 -0.5
784,408 - OHPLBJKB_00761 0.73 -2.5
784,425 + OHPLBJKB_00761 0.74 -2.0
784,428 + OHPLBJKB_00761 0.75 +1.2
784,540 + OHPLBJKB_00761 0.84 -2.2
784,540 + OHPLBJKB_00761 0.84 -0.3
784,541 - OHPLBJKB_00761 0.85 -0.3
784,541 - OHPLBJKB_00761 0.85 +1.2
784,541 - OHPLBJKB_00761 0.85 +0.2
784,601 + OHPLBJKB_00761 0.90 -0.2
784,601 + OHPLBJKB_00761 0.90 -1.4
784,602 - OHPLBJKB_00761 0.90 -0.8
784,689 - +0.3
784,717 + -1.6
784,717 + -0.8
784,722 - -1.7
784,817 + OHPLBJKB_00762 0.18 -2.7
784,818 - OHPLBJKB_00762 0.18 +1.6
784,871 - OHPLBJKB_00762 0.27 -1.9
784,871 - OHPLBJKB_00762 0.27 -1.3
784,932 + OHPLBJKB_00762 0.38 -1.4
784,932 + OHPLBJKB_00762 0.38 -1.3
784,933 - OHPLBJKB_00762 0.38 -2.0
784,933 - OHPLBJKB_00762 0.38 -0.4
784,933 - OHPLBJKB_00762 0.38 -2.5
784,933 - OHPLBJKB_00762 0.38 -0.1
784,934 + OHPLBJKB_00762 0.38 -1.7
784,934 + OHPLBJKB_00762 0.38 -2.6
784,934 + OHPLBJKB_00762 0.38 -2.2
784,934 + OHPLBJKB_00762 0.38 +1.4
784,934 + OHPLBJKB_00762 0.38 -1.8
784,935 - OHPLBJKB_00762 0.38 -1.3
785,082 - OHPLBJKB_00762 0.63 -0.9
785,302 + -1.9
785,303 - -0.7
785,303 - -0.6
785,307 + -1.1
785,308 - +0.2
785,311 + -1.0
785,311 + +1.3
785,311 + -2.4
785,312 - -1.7
785,312 - +0.0
785,312 - -0.8
785,312 - -1.0
785,312 - -0.6
785,312 - +3.5
785,315 + -2.4
785,315 + -2.2
785,316 - -2.5
785,319 + -2.4
785,320 - +0.0
785,400 + OHPLBJKB_00763 0.31 +0.7
785,400 + OHPLBJKB_00763 0.31 -0.5
785,401 - OHPLBJKB_00763 0.31 +1.5
785,401 - OHPLBJKB_00763 0.31 +0.4
785,401 - OHPLBJKB_00763 0.31 -1.2
785,499 - OHPLBJKB_00763 0.65 -2.5
785,515 - OHPLBJKB_00763 0.70 +1.9
785,525 + OHPLBJKB_00763 0.74 -0.2
785,525 + OHPLBJKB_00763 0.74 +0.1
785,525 + OHPLBJKB_00763 0.74 -0.3
785,526 - OHPLBJKB_00763 0.74 +2.0
785,552 + OHPLBJKB_00763 0.83 -0.3
785,552 + OHPLBJKB_00763 0.83 -1.8
785,552 + OHPLBJKB_00763 0.83 -0.9
785,553 - OHPLBJKB_00763 0.84 +1.4
785,554 + OHPLBJKB_00763 0.84 +2.4
785,554 + OHPLBJKB_00763 0.84 -0.8
785,554 + OHPLBJKB_00763 0.84 -1.7
785,554 + OHPLBJKB_00763 0.84 +1.9
785,554 + OHPLBJKB_00763 0.84 -2.6
785,554 + OHPLBJKB_00763 0.84 -1.3
785,555 - OHPLBJKB_00763 0.84 +0.2
785,555 - OHPLBJKB_00763 0.84 +1.8
785,555 - OHPLBJKB_00763 0.84 -1.7
785,555 - OHPLBJKB_00763 0.84 +2.5
785,562 + OHPLBJKB_00763 0.87 +1.1
785,583 - -0.4
785,583 - +0.2
785,590 - -2.2
785,601 - +0.8
785,601 - -1.2
785,629 + +0.2
785,649 - +1.0
785,676 + OHPLBJKB_00764 0.14 -2.6
785,676 + OHPLBJKB_00764 0.14 +0.2
785,676 + OHPLBJKB_00764 0.14 -2.0
785,676 + OHPLBJKB_00764 0.14 -1.6
785,676 + OHPLBJKB_00764 0.14 -1.5
785,677 - OHPLBJKB_00764 0.14 -1.2
785,677 - OHPLBJKB_00764 0.14 +1.0
785,677 - OHPLBJKB_00764 0.14 +0.8
785,677 - OHPLBJKB_00764 0.14 +1.5
785,677 - OHPLBJKB_00764 0.14 -0.7
785,677 - OHPLBJKB_00764 0.14 +0.7
785,677 - OHPLBJKB_00764 0.14 +1.8
785,781 + OHPLBJKB_00764 0.32 -0.3
785,781 + OHPLBJKB_00764 0.32 -0.7
785,782 - OHPLBJKB_00764 0.33 +0.9
785,795 - OHPLBJKB_00764 0.35 +1.4
785,953 + OHPLBJKB_00764 0.63 -1.5
785,954 - OHPLBJKB_00764 0.63 +0.3
785,955 + OHPLBJKB_00764 0.63 +1.5
785,955 + OHPLBJKB_00764 0.63 +1.2
785,955 + OHPLBJKB_00764 0.63 -1.0
785,956 - OHPLBJKB_00764 0.63 -1.9
785,956 - OHPLBJKB_00764 0.63 -0.2
786,036 - OHPLBJKB_00764 0.77 -0.8
786,045 - OHPLBJKB_00764 0.79 +0.2
786,045 - OHPLBJKB_00764 0.79 -0.8
786,101 + OHPLBJKB_00764 0.89 +0.9
786,101 + OHPLBJKB_00764 0.89 -0.1
786,104 + OHPLBJKB_00764 0.89 +1.8
786,119 - -1.1
786,120 + -0.5
786,120 + +1.3
786,120 + +0.9
786,120 + +1.5
786,121 - -1.3
786,121 - -1.6
786,121 - -1.2
786,157 + -1.3
786,158 - -1.0
786,189 + -1.3
786,240 + -1.1
786,241 - +0.3
786,241 - -1.7
786,241 - -1.5

Or see this region's nucleotide sequence