Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00715

Experiment: hib MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00713 and OHPLBJKB_00714 are separated by 188 nucleotidesOHPLBJKB_00714 and OHPLBJKB_00715 are separated by 31 nucleotidesOHPLBJKB_00715 and OHPLBJKB_00716 are separated by 45 nucleotides OHPLBJKB_00713: OHPLBJKB_00713 - Thymidylate kinase, at 731,248 to 731,940 _00713 OHPLBJKB_00714: OHPLBJKB_00714 - hypothetical protein, at 732,129 to 732,827 _00714 OHPLBJKB_00715: OHPLBJKB_00715 - hypothetical protein, at 732,859 to 733,617 _00715 OHPLBJKB_00716: OHPLBJKB_00716 - hypothetical protein, at 733,663 to 735,012 _00716 Position (kb) 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 731.863 kb on - strand, within OHPLBJKB_00713at 731.918 kb on - strandat 732.128 kb on + strandat 732.172 kb on + strandat 732.172 kb on + strandat 732.173 kb on - strandat 732.173 kb on - strandat 732.341 kb on + strand, within OHPLBJKB_00714at 732.386 kb on + strand, within OHPLBJKB_00714at 732.390 kb on - strand, within OHPLBJKB_00714at 732.401 kb on + strand, within OHPLBJKB_00714at 732.405 kb on + strand, within OHPLBJKB_00714at 732.406 kb on - strand, within OHPLBJKB_00714at 732.406 kb on - strand, within OHPLBJKB_00714at 732.597 kb on + strand, within OHPLBJKB_00714at 732.615 kb on + strand, within OHPLBJKB_00714at 732.626 kb on - strand, within OHPLBJKB_00714at 732.869 kb on + strandat 732.869 kb on + strandat 732.886 kb on - strandat 732.886 kb on - strandat 732.888 kb on + strandat 732.888 kb on + strandat 732.889 kb on - strandat 732.891 kb on + strandat 732.891 kb on + strandat 732.892 kb on - strandat 732.892 kb on - strandat 732.914 kb on - strandat 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.171 kb on + strand, within OHPLBJKB_00715at 733.171 kb on + strand, within OHPLBJKB_00715at 733.172 kb on - strand, within OHPLBJKB_00715at 733.172 kb on - strand, within OHPLBJKB_00715at 733.172 kb on - strand, within OHPLBJKB_00715at 733.202 kb on + strand, within OHPLBJKB_00715at 733.203 kb on - strand, within OHPLBJKB_00715at 733.203 kb on - strand, within OHPLBJKB_00715at 733.203 kb on - strand, within OHPLBJKB_00715at 733.282 kb on + strand, within OHPLBJKB_00715at 733.283 kb on - strand, within OHPLBJKB_00715at 733.283 kb on - strand, within OHPLBJKB_00715at 733.283 kb on - strand, within OHPLBJKB_00715at 733.286 kb on - strand, within OHPLBJKB_00715at 733.361 kb on + strand, within OHPLBJKB_00715at 733.361 kb on + strand, within OHPLBJKB_00715at 733.362 kb on - strand, within OHPLBJKB_00715at 733.394 kb on + strand, within OHPLBJKB_00715at 733.453 kb on + strand, within OHPLBJKB_00715at 733.454 kb on - strand, within OHPLBJKB_00715at 733.482 kb on + strand, within OHPLBJKB_00715at 733.483 kb on - strand, within OHPLBJKB_00715at 733.498 kb on + strand, within OHPLBJKB_00715at 733.499 kb on - strand, within OHPLBJKB_00715at 733.499 kb on - strand, within OHPLBJKB_00715at 733.499 kb on - strand, within OHPLBJKB_00715at 733.611 kb on - strandat 733.615 kb on + strandat 733.615 kb on + strandat 733.615 kb on + strandat 733.636 kb on + strandat 733.675 kb on - strandat 733.675 kb on - strandat 733.867 kb on - strand, within OHPLBJKB_00716at 733.867 kb on - strand, within OHPLBJKB_00716at 733.867 kb on - strand, within OHPLBJKB_00716at 733.869 kb on + strand, within OHPLBJKB_00716at 733.870 kb on - strand, within OHPLBJKB_00716at 733.870 kb on - strand, within OHPLBJKB_00716at 733.927 kb on - strand, within OHPLBJKB_00716at 734.015 kb on + strand, within OHPLBJKB_00716at 734.016 kb on - strand, within OHPLBJKB_00716at 734.039 kb on + strand, within OHPLBJKB_00716at 734.040 kb on - strand, within OHPLBJKB_00716at 734.040 kb on - strand, within OHPLBJKB_00716at 734.078 kb on - strand, within OHPLBJKB_00716at 734.135 kb on + strand, within OHPLBJKB_00716at 734.135 kb on + strand, within OHPLBJKB_00716at 734.159 kb on + strand, within OHPLBJKB_00716at 734.205 kb on - strand, within OHPLBJKB_00716at 734.212 kb on + strand, within OHPLBJKB_00716at 734.251 kb on + strand, within OHPLBJKB_00716at 734.252 kb on - strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.488 kb on - strand, within OHPLBJKB_00716at 734.488 kb on - strand, within OHPLBJKB_00716at 734.534 kb on + strand, within OHPLBJKB_00716at 734.570 kb on + strand, within OHPLBJKB_00716at 734.571 kb on - strand, within OHPLBJKB_00716

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
remove
731,863 - OHPLBJKB_00713 0.89 +1.2
731,918 - +2.2
732,128 + +0.2
732,172 + -1.8
732,172 + -0.6
732,173 - -1.9
732,173 - +1.1
732,341 + OHPLBJKB_00714 0.30 +0.7
732,386 + OHPLBJKB_00714 0.37 -2.5
732,390 - OHPLBJKB_00714 0.37 -1.0
732,401 + OHPLBJKB_00714 0.39 -0.6
732,405 + OHPLBJKB_00714 0.39 -0.2
732,406 - OHPLBJKB_00714 0.40 +0.7
732,406 - OHPLBJKB_00714 0.40 -2.4
732,597 + OHPLBJKB_00714 0.67 +0.7
732,615 + OHPLBJKB_00714 0.70 -1.2
732,626 - OHPLBJKB_00714 0.71 +1.1
732,869 + +0.3
732,869 + +0.6
732,886 - -2.5
732,886 - +0.8
732,888 + -2.5
732,888 + +1.3
732,889 - +0.2
732,891 + +0.6
732,891 + -2.6
732,892 - -1.1
732,892 - -2.3
732,914 - -1.9
733,167 + OHPLBJKB_00715 0.41 -0.5
733,167 + OHPLBJKB_00715 0.41 +1.1
733,167 + OHPLBJKB_00715 0.41 +0.4
733,167 + OHPLBJKB_00715 0.41 -0.7
733,167 + OHPLBJKB_00715 0.41 +0.0
733,167 + OHPLBJKB_00715 0.41 -2.6
733,168 - OHPLBJKB_00715 0.41 +1.0
733,168 - OHPLBJKB_00715 0.41 +0.5
733,168 - OHPLBJKB_00715 0.41 +1.0
733,168 - OHPLBJKB_00715 0.41 +0.4
733,168 - OHPLBJKB_00715 0.41 +1.2
733,171 + OHPLBJKB_00715 0.41 -0.6
733,171 + OHPLBJKB_00715 0.41 -3.7
733,172 - OHPLBJKB_00715 0.41 +1.7
733,172 - OHPLBJKB_00715 0.41 +1.0
733,172 - OHPLBJKB_00715 0.41 -1.4
733,202 + OHPLBJKB_00715 0.45 -0.9
733,203 - OHPLBJKB_00715 0.45 -2.7
733,203 - OHPLBJKB_00715 0.45 +1.3
733,203 - OHPLBJKB_00715 0.45 -1.0
733,282 + OHPLBJKB_00715 0.56 -0.3
733,283 - OHPLBJKB_00715 0.56 -2.0
733,283 - OHPLBJKB_00715 0.56 -1.8
733,283 - OHPLBJKB_00715 0.56 -0.5
733,286 - OHPLBJKB_00715 0.56 +0.4
733,361 + OHPLBJKB_00715 0.66 -0.3
733,361 + OHPLBJKB_00715 0.66 -1.4
733,362 - OHPLBJKB_00715 0.66 -0.0
733,394 + OHPLBJKB_00715 0.70 +0.1
733,453 + OHPLBJKB_00715 0.78 +0.3
733,454 - OHPLBJKB_00715 0.78 -1.5
733,482 + OHPLBJKB_00715 0.82 +1.4
733,483 - OHPLBJKB_00715 0.82 -0.8
733,498 + OHPLBJKB_00715 0.84 -0.7
733,499 - OHPLBJKB_00715 0.84 +0.4
733,499 - OHPLBJKB_00715 0.84 +0.3
733,499 - OHPLBJKB_00715 0.84 +1.1
733,611 - -0.9
733,615 + -2.3
733,615 + +0.8
733,615 + -1.3
733,636 + -0.9
733,675 - +0.7
733,675 - -1.1
733,867 - OHPLBJKB_00716 0.15 -1.2
733,867 - OHPLBJKB_00716 0.15 -0.8
733,867 - OHPLBJKB_00716 0.15 +0.4
733,869 + OHPLBJKB_00716 0.15 +0.0
733,870 - OHPLBJKB_00716 0.15 -1.6
733,870 - OHPLBJKB_00716 0.15 +0.4
733,927 - OHPLBJKB_00716 0.20 +0.2
734,015 + OHPLBJKB_00716 0.26 +0.6
734,016 - OHPLBJKB_00716 0.26 -0.8
734,039 + OHPLBJKB_00716 0.28 +0.9
734,040 - OHPLBJKB_00716 0.28 -0.5
734,040 - OHPLBJKB_00716 0.28 +1.1
734,078 - OHPLBJKB_00716 0.31 +0.2
734,135 + OHPLBJKB_00716 0.35 +0.5
734,135 + OHPLBJKB_00716 0.35 -1.3
734,159 + OHPLBJKB_00716 0.37 -2.0
734,205 - OHPLBJKB_00716 0.40 +0.9
734,212 + OHPLBJKB_00716 0.41 -1.9
734,251 + OHPLBJKB_00716 0.44 +0.3
734,252 - OHPLBJKB_00716 0.44 +0.9
734,281 + OHPLBJKB_00716 0.46 +1.5
734,281 + OHPLBJKB_00716 0.46 +0.4
734,281 + OHPLBJKB_00716 0.46 +0.6
734,281 + OHPLBJKB_00716 0.46 +2.5
734,281 + OHPLBJKB_00716 0.46 +0.0
734,281 + OHPLBJKB_00716 0.46 +0.7
734,281 + OHPLBJKB_00716 0.46 +1.6
734,282 - OHPLBJKB_00716 0.46 -0.3
734,282 - OHPLBJKB_00716 0.46 +0.2
734,282 - OHPLBJKB_00716 0.46 +1.2
734,282 - OHPLBJKB_00716 0.46 -1.0
734,282 - OHPLBJKB_00716 0.46 -2.1
734,488 - OHPLBJKB_00716 0.61 -0.5
734,488 - OHPLBJKB_00716 0.61 -2.3
734,534 + OHPLBJKB_00716 0.65 +0.9
734,570 + OHPLBJKB_00716 0.67 +0.1
734,571 - OHPLBJKB_00716 0.67 +0.2

Or see this region's nucleotide sequence