Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00671

Experiment: hib MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00669 and OHPLBJKB_00670 are separated by 0 nucleotidesOHPLBJKB_00670 and OHPLBJKB_00671 are separated by 24 nucleotidesOHPLBJKB_00671 and OHPLBJKB_00672 overlap by 1 nucleotidesOHPLBJKB_00672 and OHPLBJKB_00673 are separated by 28 nucleotides OHPLBJKB_00669: OHPLBJKB_00669 - ADP-ribose pyrophosphatase, at 688,160 to 688,789 _00669 OHPLBJKB_00670: OHPLBJKB_00670 - hypothetical protein, at 688,790 to 689,212 _00670 OHPLBJKB_00671: OHPLBJKB_00671 - '3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA' transl_table=11, at 689,237 to 690,064 _00671 OHPLBJKB_00672: OHPLBJKB_00672 - hypothetical protein, at 690,064 to 690,645 _00672 OHPLBJKB_00673: OHPLBJKB_00673 - DNA topoisomerase 4 subunit B, at 690,674 to 692,566 _00673 Position (kb) 689 690 691Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 688.262 kb on - strand, within OHPLBJKB_00669at 688.262 kb on - strand, within OHPLBJKB_00669at 688.305 kb on + strand, within OHPLBJKB_00669at 688.519 kb on - strand, within OHPLBJKB_00669at 688.543 kb on - strand, within OHPLBJKB_00669at 688.588 kb on + strand, within OHPLBJKB_00669at 688.588 kb on + strand, within OHPLBJKB_00669at 688.588 kb on + strand, within OHPLBJKB_00669at 688.588 kb on + strand, within OHPLBJKB_00669at 688.589 kb on - strand, within OHPLBJKB_00669at 688.589 kb on - strand, within OHPLBJKB_00669at 688.589 kb on - strand, within OHPLBJKB_00669at 688.654 kb on + strand, within OHPLBJKB_00669at 688.654 kb on + strand, within OHPLBJKB_00669at 688.672 kb on - strand, within OHPLBJKB_00669at 688.688 kb on + strand, within OHPLBJKB_00669at 688.698 kb on + strand, within OHPLBJKB_00669at 688.770 kb on + strandat 688.896 kb on + strand, within OHPLBJKB_00670at 688.897 kb on - strand, within OHPLBJKB_00670at 688.897 kb on - strand, within OHPLBJKB_00670at 688.897 kb on - strand, within OHPLBJKB_00670at 688.897 kb on - strand, within OHPLBJKB_00670at 688.901 kb on + strand, within OHPLBJKB_00670at 688.902 kb on - strand, within OHPLBJKB_00670at 688.953 kb on - strand, within OHPLBJKB_00670at 688.957 kb on + strand, within OHPLBJKB_00670at 688.958 kb on - strand, within OHPLBJKB_00670at 688.971 kb on + strand, within OHPLBJKB_00670at 688.971 kb on + strand, within OHPLBJKB_00670at 688.972 kb on - strand, within OHPLBJKB_00670at 689.030 kb on + strand, within OHPLBJKB_00670at 689.030 kb on + strand, within OHPLBJKB_00670at 689.207 kb on + strandat 689.211 kb on - strandat 689.344 kb on - strand, within OHPLBJKB_00671at 689.361 kb on - strand, within OHPLBJKB_00671at 689.431 kb on - strand, within OHPLBJKB_00671at 689.540 kb on + strand, within OHPLBJKB_00671at 689.540 kb on + strand, within OHPLBJKB_00671at 689.540 kb on + strand, within OHPLBJKB_00671at 689.541 kb on - strand, within OHPLBJKB_00671at 689.541 kb on - strand, within OHPLBJKB_00671at 689.541 kb on - strand, within OHPLBJKB_00671at 689.587 kb on + strand, within OHPLBJKB_00671at 689.710 kb on + strand, within OHPLBJKB_00671at 689.710 kb on + strand, within OHPLBJKB_00671at 689.711 kb on - strand, within OHPLBJKB_00671at 689.711 kb on - strand, within OHPLBJKB_00671at 689.752 kb on + strand, within OHPLBJKB_00671at 689.752 kb on + strand, within OHPLBJKB_00671at 689.753 kb on - strand, within OHPLBJKB_00671at 689.753 kb on - strand, within OHPLBJKB_00671at 689.753 kb on - strand, within OHPLBJKB_00671at 689.828 kb on + strand, within OHPLBJKB_00671at 689.828 kb on + strand, within OHPLBJKB_00671at 689.829 kb on - strand, within OHPLBJKB_00671at 689.829 kb on - strand, within OHPLBJKB_00671at 689.845 kb on + strand, within OHPLBJKB_00671at 689.845 kb on + strand, within OHPLBJKB_00671at 689.845 kb on + strand, within OHPLBJKB_00671at 689.846 kb on - strand, within OHPLBJKB_00671at 689.846 kb on - strand, within OHPLBJKB_00671at 689.917 kb on + strand, within OHPLBJKB_00671at 689.979 kb on + strand, within OHPLBJKB_00671at 689.979 kb on + strand, within OHPLBJKB_00671at 689.979 kb on + strand, within OHPLBJKB_00671at 689.980 kb on - strand, within OHPLBJKB_00671at 690.069 kb on + strandat 690.070 kb on - strandat 690.079 kb on + strandat 690.080 kb on - strandat 690.080 kb on - strandat 690.083 kb on + strandat 690.283 kb on + strand, within OHPLBJKB_00672at 690.284 kb on - strand, within OHPLBJKB_00672at 690.284 kb on - strand, within OHPLBJKB_00672at 690.284 kb on - strand, within OHPLBJKB_00672at 690.310 kb on - strand, within OHPLBJKB_00672at 690.329 kb on + strand, within OHPLBJKB_00672at 690.329 kb on + strand, within OHPLBJKB_00672at 690.342 kb on - strand, within OHPLBJKB_00672at 690.367 kb on + strand, within OHPLBJKB_00672at 690.406 kb on + strand, within OHPLBJKB_00672at 690.406 kb on + strand, within OHPLBJKB_00672at 690.406 kb on + strand, within OHPLBJKB_00672at 690.406 kb on + strand, within OHPLBJKB_00672at 690.406 kb on + strand, within OHPLBJKB_00672at 690.406 kb on + strand, within OHPLBJKB_00672at 690.406 kb on + strand, within OHPLBJKB_00672at 690.407 kb on - strand, within OHPLBJKB_00672at 690.407 kb on - strand, within OHPLBJKB_00672at 690.407 kb on - strand, within OHPLBJKB_00672at 690.407 kb on - strand, within OHPLBJKB_00672at 690.407 kb on - strand, within OHPLBJKB_00672at 690.407 kb on - strand, within OHPLBJKB_00672at 690.407 kb on - strand, within OHPLBJKB_00672at 690.407 kb on - strand, within OHPLBJKB_00672at 690.426 kb on + strand, within OHPLBJKB_00672at 690.538 kb on + strand, within OHPLBJKB_00672at 690.538 kb on + strand, within OHPLBJKB_00672at 690.538 kb on + strand, within OHPLBJKB_00672at 690.538 kb on + strand, within OHPLBJKB_00672at 690.538 kb on + strand, within OHPLBJKB_00672at 690.563 kb on + strand, within OHPLBJKB_00672at 690.563 kb on + strand, within OHPLBJKB_00672at 690.563 kb on + strand, within OHPLBJKB_00672at 690.563 kb on + strand, within OHPLBJKB_00672at 690.563 kb on + strand, within OHPLBJKB_00672at 690.563 kb on + strand, within OHPLBJKB_00672at 690.660 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
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688,262 - OHPLBJKB_00669 0.16 +1.1
688,262 - OHPLBJKB_00669 0.16 +2.6
688,305 + OHPLBJKB_00669 0.23 -0.3
688,519 - OHPLBJKB_00669 0.57 +1.3
688,543 - OHPLBJKB_00669 0.61 +0.8
688,588 + OHPLBJKB_00669 0.68 +0.6
688,588 + OHPLBJKB_00669 0.68 -0.7
688,588 + OHPLBJKB_00669 0.68 -0.0
688,588 + OHPLBJKB_00669 0.68 -0.8
688,589 - OHPLBJKB_00669 0.68 +1.0
688,589 - OHPLBJKB_00669 0.68 -0.0
688,589 - OHPLBJKB_00669 0.68 +0.3
688,654 + OHPLBJKB_00669 0.78 +0.5
688,654 + OHPLBJKB_00669 0.78 +1.0
688,672 - OHPLBJKB_00669 0.81 +1.7
688,688 + OHPLBJKB_00669 0.84 -0.5
688,698 + OHPLBJKB_00669 0.85 -0.1
688,770 + -1.2
688,896 + OHPLBJKB_00670 0.25 -1.1
688,897 - OHPLBJKB_00670 0.25 +0.2
688,897 - OHPLBJKB_00670 0.25 -1.0
688,897 - OHPLBJKB_00670 0.25 -1.8
688,897 - OHPLBJKB_00670 0.25 -0.9
688,901 + OHPLBJKB_00670 0.26 -0.3
688,902 - OHPLBJKB_00670 0.26 +1.0
688,953 - OHPLBJKB_00670 0.39 +0.2
688,957 + OHPLBJKB_00670 0.39 -0.4
688,958 - OHPLBJKB_00670 0.40 -1.7
688,971 + OHPLBJKB_00670 0.43 -0.6
688,971 + OHPLBJKB_00670 0.43 -1.4
688,972 - OHPLBJKB_00670 0.43 +0.4
689,030 + OHPLBJKB_00670 0.57 -1.3
689,030 + OHPLBJKB_00670 0.57 -1.0
689,207 + -0.2
689,211 - -0.7
689,344 - OHPLBJKB_00671 0.13 -0.5
689,361 - OHPLBJKB_00671 0.15 -1.2
689,431 - OHPLBJKB_00671 0.23 +0.4
689,540 + OHPLBJKB_00671 0.37 +0.4
689,540 + OHPLBJKB_00671 0.37 +0.3
689,540 + OHPLBJKB_00671 0.37 +0.3
689,541 - OHPLBJKB_00671 0.37 -2.1
689,541 - OHPLBJKB_00671 0.37 -2.6
689,541 - OHPLBJKB_00671 0.37 -0.8
689,587 + OHPLBJKB_00671 0.42 -2.1
689,710 + OHPLBJKB_00671 0.57 -0.8
689,710 + OHPLBJKB_00671 0.57 -1.6
689,711 - OHPLBJKB_00671 0.57 -1.1
689,711 - OHPLBJKB_00671 0.57 -1.8
689,752 + OHPLBJKB_00671 0.62 +0.2
689,752 + OHPLBJKB_00671 0.62 +1.0
689,753 - OHPLBJKB_00671 0.62 -0.4
689,753 - OHPLBJKB_00671 0.62 +1.1
689,753 - OHPLBJKB_00671 0.62 -2.1
689,828 + OHPLBJKB_00671 0.71 -1.4
689,828 + OHPLBJKB_00671 0.71 -1.8
689,829 - OHPLBJKB_00671 0.71 +1.3
689,829 - OHPLBJKB_00671 0.71 +1.1
689,845 + OHPLBJKB_00671 0.73 -1.4
689,845 + OHPLBJKB_00671 0.73 -1.0
689,845 + OHPLBJKB_00671 0.73 -1.1
689,846 - OHPLBJKB_00671 0.74 -0.9
689,846 - OHPLBJKB_00671 0.74 -2.1
689,917 + OHPLBJKB_00671 0.82 -3.4
689,979 + OHPLBJKB_00671 0.90 -1.8
689,979 + OHPLBJKB_00671 0.90 -1.8
689,979 + OHPLBJKB_00671 0.90 -0.3
689,980 - OHPLBJKB_00671 0.90 -1.8
690,069 + -0.9
690,070 - -0.0
690,079 + -1.3
690,080 - +0.7
690,080 - -0.7
690,083 + -0.2
690,283 + OHPLBJKB_00672 0.38 +0.0
690,284 - OHPLBJKB_00672 0.38 -1.7
690,284 - OHPLBJKB_00672 0.38 +1.0
690,284 - OHPLBJKB_00672 0.38 -0.2
690,310 - OHPLBJKB_00672 0.42 -0.0
690,329 + OHPLBJKB_00672 0.46 -1.3
690,329 + OHPLBJKB_00672 0.46 -1.0
690,342 - OHPLBJKB_00672 0.48 -0.6
690,367 + OHPLBJKB_00672 0.52 +0.2
690,406 + OHPLBJKB_00672 0.59 +0.9
690,406 + OHPLBJKB_00672 0.59 -0.2
690,406 + OHPLBJKB_00672 0.59 -0.4
690,406 + OHPLBJKB_00672 0.59 +0.3
690,406 + OHPLBJKB_00672 0.59 -2.2
690,406 + OHPLBJKB_00672 0.59 +1.4
690,406 + OHPLBJKB_00672 0.59 +0.9
690,407 - OHPLBJKB_00672 0.59 -2.1
690,407 - OHPLBJKB_00672 0.59 -0.2
690,407 - OHPLBJKB_00672 0.59 -1.0
690,407 - OHPLBJKB_00672 0.59 +0.8
690,407 - OHPLBJKB_00672 0.59 +2.8
690,407 - OHPLBJKB_00672 0.59 -2.0
690,407 - OHPLBJKB_00672 0.59 +0.1
690,407 - OHPLBJKB_00672 0.59 +0.3
690,426 + OHPLBJKB_00672 0.62 +0.3
690,538 + OHPLBJKB_00672 0.81 +0.2
690,538 + OHPLBJKB_00672 0.81 -0.8
690,538 + OHPLBJKB_00672 0.81 +1.3
690,538 + OHPLBJKB_00672 0.81 -0.3
690,538 + OHPLBJKB_00672 0.81 +2.3
690,563 + OHPLBJKB_00672 0.86 +0.1
690,563 + OHPLBJKB_00672 0.86 -0.1
690,563 + OHPLBJKB_00672 0.86 +0.6
690,563 + OHPLBJKB_00672 0.86 +0.1
690,563 + OHPLBJKB_00672 0.86 -0.0
690,563 + OHPLBJKB_00672 0.86 +0.0
690,660 + -1.8

Or see this region's nucleotide sequence