Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00571

Experiment: hib MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00569 and OHPLBJKB_00570 are separated by 10 nucleotidesOHPLBJKB_00570 and OHPLBJKB_00571 are separated by 22 nucleotidesOHPLBJKB_00571 and OHPLBJKB_00572 are separated by 248 nucleotides OHPLBJKB_00569: OHPLBJKB_00569 - N-acetylgalactosamine permease IIC component 1, at 580,801 to 581,580 _00569 OHPLBJKB_00570: OHPLBJKB_00570 - PTS system fructose-specific EIIB component, at 581,591 to 582,064 _00570 OHPLBJKB_00571: OHPLBJKB_00571 - D-tagatose-1,6-bisphosphate aldolase subunit KbaZ, at 582,087 to 583,367 _00571 OHPLBJKB_00572: OHPLBJKB_00572 - Glucitol operon repressor, at 583,616 to 584,425 _00572 Position (kb) 582 583 584Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 581.102 kb on + strand, within OHPLBJKB_00569at 581.102 kb on + strand, within OHPLBJKB_00569at 581.102 kb on + strand, within OHPLBJKB_00569at 581.103 kb on - strand, within OHPLBJKB_00569at 581.103 kb on - strand, within OHPLBJKB_00569at 581.103 kb on - strand, within OHPLBJKB_00569at 581.103 kb on - strand, within OHPLBJKB_00569at 581.103 kb on - strand, within OHPLBJKB_00569at 581.159 kb on + strand, within OHPLBJKB_00569at 581.159 kb on + strand, within OHPLBJKB_00569at 581.160 kb on - strand, within OHPLBJKB_00569at 581.185 kb on - strand, within OHPLBJKB_00569at 581.251 kb on - strand, within OHPLBJKB_00569at 581.251 kb on - strand, within OHPLBJKB_00569at 581.251 kb on - strand, within OHPLBJKB_00569at 581.294 kb on - strand, within OHPLBJKB_00569at 581.323 kb on - strand, within OHPLBJKB_00569at 581.323 kb on - strand, within OHPLBJKB_00569at 581.346 kb on + strand, within OHPLBJKB_00569at 581.346 kb on + strand, within OHPLBJKB_00569at 581.364 kb on + strand, within OHPLBJKB_00569at 581.455 kb on + strand, within OHPLBJKB_00569at 581.455 kb on + strand, within OHPLBJKB_00569at 581.496 kb on + strand, within OHPLBJKB_00569at 581.496 kb on + strand, within OHPLBJKB_00569at 581.496 kb on + strand, within OHPLBJKB_00569at 581.496 kb on + strand, within OHPLBJKB_00569at 581.496 kb on + strand, within OHPLBJKB_00569at 581.496 kb on + strand, within OHPLBJKB_00569at 581.496 kb on + strand, within OHPLBJKB_00569at 581.496 kb on + strand, within OHPLBJKB_00569at 581.496 kb on + strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.497 kb on - strand, within OHPLBJKB_00569at 581.518 kb on - strandat 581.533 kb on - strandat 581.598 kb on - strandat 581.602 kb on + strandat 581.746 kb on + strand, within OHPLBJKB_00570at 581.816 kb on - strand, within OHPLBJKB_00570at 581.912 kb on + strand, within OHPLBJKB_00570at 582.056 kb on - strandat 582.056 kb on - strandat 582.065 kb on - strandat 582.089 kb on - strandat 582.134 kb on + strandat 582.134 kb on + strandat 582.135 kb on - strandat 582.135 kb on - strandat 582.135 kb on - strandat 582.135 kb on - strandat 582.209 kb on - strandat 582.251 kb on + strand, within OHPLBJKB_00571at 582.251 kb on + strand, within OHPLBJKB_00571at 582.251 kb on + strand, within OHPLBJKB_00571at 582.252 kb on - strand, within OHPLBJKB_00571at 582.252 kb on - strand, within OHPLBJKB_00571at 582.299 kb on - strand, within OHPLBJKB_00571at 582.319 kb on + strand, within OHPLBJKB_00571at 582.319 kb on + strand, within OHPLBJKB_00571at 582.319 kb on + strand, within OHPLBJKB_00571at 582.320 kb on - strand, within OHPLBJKB_00571at 582.323 kb on + strand, within OHPLBJKB_00571at 582.323 kb on + strand, within OHPLBJKB_00571at 582.323 kb on + strand, within OHPLBJKB_00571at 582.323 kb on + strand, within OHPLBJKB_00571at 582.323 kb on + strand, within OHPLBJKB_00571at 582.323 kb on + strand, within OHPLBJKB_00571at 582.324 kb on - strand, within OHPLBJKB_00571at 582.324 kb on - strand, within OHPLBJKB_00571at 582.324 kb on - strand, within OHPLBJKB_00571at 582.324 kb on - strand, within OHPLBJKB_00571at 582.324 kb on - strand, within OHPLBJKB_00571at 582.324 kb on - strand, within OHPLBJKB_00571at 582.324 kb on - strand, within OHPLBJKB_00571at 582.324 kb on - strand, within OHPLBJKB_00571at 582.324 kb on - strand, within OHPLBJKB_00571at 582.326 kb on - strand, within OHPLBJKB_00571at 582.628 kb on - strand, within OHPLBJKB_00571at 582.810 kb on + strand, within OHPLBJKB_00571at 582.859 kb on + strand, within OHPLBJKB_00571at 582.859 kb on + strand, within OHPLBJKB_00571at 582.860 kb on - strand, within OHPLBJKB_00571at 582.860 kb on - strand, within OHPLBJKB_00571at 582.860 kb on - strand, within OHPLBJKB_00571at 582.860 kb on - strand, within OHPLBJKB_00571at 582.860 kb on - strand, within OHPLBJKB_00571at 583.021 kb on + strand, within OHPLBJKB_00571at 583.191 kb on - strand, within OHPLBJKB_00571at 583.192 kb on + strand, within OHPLBJKB_00571at 583.193 kb on - strand, within OHPLBJKB_00571at 583.210 kb on - strand, within OHPLBJKB_00571at 583.356 kb on + strandat 583.518 kb on - strandat 583.518 kb on - strandat 583.518 kb on - strandat 583.558 kb on + strandat 583.559 kb on - strandat 583.613 kb on - strandat 583.613 kb on - strandat 583.613 kb on - strandat 583.615 kb on + strandat 583.615 kb on + strandat 583.616 kb on - strandat 583.622 kb on - strandat 583.736 kb on + strand, within OHPLBJKB_00572at 583.736 kb on + strand, within OHPLBJKB_00572at 583.737 kb on - strand, within OHPLBJKB_00572at 583.737 kb on - strand, within OHPLBJKB_00572at 583.737 kb on - strand, within OHPLBJKB_00572at 583.743 kb on + strand, within OHPLBJKB_00572at 583.744 kb on - strand, within OHPLBJKB_00572at 583.747 kb on + strand, within OHPLBJKB_00572at 583.747 kb on + strand, within OHPLBJKB_00572at 583.748 kb on - strand, within OHPLBJKB_00572at 583.748 kb on - strand, within OHPLBJKB_00572at 583.748 kb on - strand, within OHPLBJKB_00572at 583.748 kb on - strand, within OHPLBJKB_00572at 583.808 kb on + strand, within OHPLBJKB_00572at 583.809 kb on - strand, within OHPLBJKB_00572at 583.867 kb on + strand, within OHPLBJKB_00572at 584.007 kb on + strand, within OHPLBJKB_00572at 584.008 kb on - strand, within OHPLBJKB_00572at 584.008 kb on - strand, within OHPLBJKB_00572at 584.115 kb on - strand, within OHPLBJKB_00572at 584.175 kb on + strand, within OHPLBJKB_00572at 584.176 kb on - strand, within OHPLBJKB_00572at 584.213 kb on - strand, within OHPLBJKB_00572at 584.287 kb on + strand, within OHPLBJKB_00572at 584.307 kb on + strand, within OHPLBJKB_00572at 584.307 kb on + strand, within OHPLBJKB_00572at 584.308 kb on - strand, within OHPLBJKB_00572at 584.311 kb on + strand, within OHPLBJKB_00572at 584.311 kb on + strand, within OHPLBJKB_00572at 584.311 kb on + strand, within OHPLBJKB_00572

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
remove
581,102 + OHPLBJKB_00569 0.39 +0.5
581,102 + OHPLBJKB_00569 0.39 +1.2
581,102 + OHPLBJKB_00569 0.39 +0.3
581,103 - OHPLBJKB_00569 0.39 +0.9
581,103 - OHPLBJKB_00569 0.39 -0.2
581,103 - OHPLBJKB_00569 0.39 +0.0
581,103 - OHPLBJKB_00569 0.39 +0.3
581,103 - OHPLBJKB_00569 0.39 -1.1
581,159 + OHPLBJKB_00569 0.46 +1.8
581,159 + OHPLBJKB_00569 0.46 +0.1
581,160 - OHPLBJKB_00569 0.46 -0.1
581,185 - OHPLBJKB_00569 0.49 -1.1
581,251 - OHPLBJKB_00569 0.58 +0.4
581,251 - OHPLBJKB_00569 0.58 +0.4
581,251 - OHPLBJKB_00569 0.58 -0.4
581,294 - OHPLBJKB_00569 0.63 -2.1
581,323 - OHPLBJKB_00569 0.67 +0.3
581,323 - OHPLBJKB_00569 0.67 -1.7
581,346 + OHPLBJKB_00569 0.70 -1.3
581,346 + OHPLBJKB_00569 0.70 -2.1
581,364 + OHPLBJKB_00569 0.72 +0.7
581,455 + OHPLBJKB_00569 0.84 +0.4
581,455 + OHPLBJKB_00569 0.84 +1.2
581,496 + OHPLBJKB_00569 0.89 -0.3
581,496 + OHPLBJKB_00569 0.89 +0.7
581,496 + OHPLBJKB_00569 0.89 +0.8
581,496 + OHPLBJKB_00569 0.89 +1.7
581,496 + OHPLBJKB_00569 0.89 -0.6
581,496 + OHPLBJKB_00569 0.89 +1.1
581,496 + OHPLBJKB_00569 0.89 -0.8
581,496 + OHPLBJKB_00569 0.89 -1.2
581,496 + OHPLBJKB_00569 0.89 -2.3
581,497 - OHPLBJKB_00569 0.89 +0.4
581,497 - OHPLBJKB_00569 0.89 +0.3
581,497 - OHPLBJKB_00569 0.89 +0.0
581,497 - OHPLBJKB_00569 0.89 +1.5
581,497 - OHPLBJKB_00569 0.89 -0.6
581,497 - OHPLBJKB_00569 0.89 -0.5
581,497 - OHPLBJKB_00569 0.89 -0.2
581,497 - OHPLBJKB_00569 0.89 +0.1
581,497 - OHPLBJKB_00569 0.89 +0.4
581,497 - OHPLBJKB_00569 0.89 -2.7
581,497 - OHPLBJKB_00569 0.89 -1.4
581,497 - OHPLBJKB_00569 0.89 -0.4
581,518 - -1.9
581,533 - -0.5
581,598 - -0.9
581,602 + -2.3
581,746 + OHPLBJKB_00570 0.33 +1.1
581,816 - OHPLBJKB_00570 0.47 +0.6
581,912 + OHPLBJKB_00570 0.68 +0.8
582,056 - -0.7
582,056 - -0.9
582,065 - +0.3
582,089 - -1.7
582,134 + -1.2
582,134 + +1.5
582,135 - +0.2
582,135 - -1.5
582,135 - +3.1
582,135 - -2.3
582,209 - -1.1
582,251 + OHPLBJKB_00571 0.13 -1.7
582,251 + OHPLBJKB_00571 0.13 -0.6
582,251 + OHPLBJKB_00571 0.13 +0.6
582,252 - OHPLBJKB_00571 0.13 +0.7
582,252 - OHPLBJKB_00571 0.13 +0.6
582,299 - OHPLBJKB_00571 0.17 -1.8
582,319 + OHPLBJKB_00571 0.18 -0.2
582,319 + OHPLBJKB_00571 0.18 -2.0
582,319 + OHPLBJKB_00571 0.18 +1.4
582,320 - OHPLBJKB_00571 0.18 +0.0
582,323 + OHPLBJKB_00571 0.18 +1.4
582,323 + OHPLBJKB_00571 0.18 +1.3
582,323 + OHPLBJKB_00571 0.18 +1.4
582,323 + OHPLBJKB_00571 0.18 +0.4
582,323 + OHPLBJKB_00571 0.18 -0.5
582,323 + OHPLBJKB_00571 0.18 -0.7
582,324 - OHPLBJKB_00571 0.19 -0.9
582,324 - OHPLBJKB_00571 0.19 +0.0
582,324 - OHPLBJKB_00571 0.19 +1.1
582,324 - OHPLBJKB_00571 0.19 +0.4
582,324 - OHPLBJKB_00571 0.19 -1.4
582,324 - OHPLBJKB_00571 0.19 -2.0
582,324 - OHPLBJKB_00571 0.19 +0.3
582,324 - OHPLBJKB_00571 0.19 +0.9
582,324 - OHPLBJKB_00571 0.19 +1.1
582,326 - OHPLBJKB_00571 0.19 +2.1
582,628 - OHPLBJKB_00571 0.42 +7.2
582,810 + OHPLBJKB_00571 0.56 -1.0
582,859 + OHPLBJKB_00571 0.60 -1.9
582,859 + OHPLBJKB_00571 0.60 +0.4
582,860 - OHPLBJKB_00571 0.60 -1.2
582,860 - OHPLBJKB_00571 0.60 +0.0
582,860 - OHPLBJKB_00571 0.60 +1.4
582,860 - OHPLBJKB_00571 0.60 -0.9
582,860 - OHPLBJKB_00571 0.60 +0.8
583,021 + OHPLBJKB_00571 0.73 -0.8
583,191 - OHPLBJKB_00571 0.86 -0.2
583,192 + OHPLBJKB_00571 0.86 +1.0
583,193 - OHPLBJKB_00571 0.86 -0.4
583,210 - OHPLBJKB_00571 0.88 +0.3
583,356 + -2.5
583,518 - -2.1
583,518 - -2.5
583,518 - -0.2
583,558 + +0.9
583,559 - +0.5
583,613 - +0.3
583,613 - -1.0
583,613 - -0.6
583,615 + -2.3
583,615 + +0.3
583,616 - -2.3
583,622 - +0.3
583,736 + OHPLBJKB_00572 0.15 +2.1
583,736 + OHPLBJKB_00572 0.15 -2.4
583,737 - OHPLBJKB_00572 0.15 -0.3
583,737 - OHPLBJKB_00572 0.15 -0.6
583,737 - OHPLBJKB_00572 0.15 +1.4
583,743 + OHPLBJKB_00572 0.16 -1.3
583,744 - OHPLBJKB_00572 0.16 +1.5
583,747 + OHPLBJKB_00572 0.16 +0.7
583,747 + OHPLBJKB_00572 0.16 +0.9
583,748 - OHPLBJKB_00572 0.16 +0.2
583,748 - OHPLBJKB_00572 0.16 +6.2
583,748 - OHPLBJKB_00572 0.16 -0.7
583,748 - OHPLBJKB_00572 0.16 -2.1
583,808 + OHPLBJKB_00572 0.24 -0.5
583,809 - OHPLBJKB_00572 0.24 -1.7
583,867 + OHPLBJKB_00572 0.31 -0.3
584,007 + OHPLBJKB_00572 0.48 -0.4
584,008 - OHPLBJKB_00572 0.48 +1.3
584,008 - OHPLBJKB_00572 0.48 -1.9
584,115 - OHPLBJKB_00572 0.62 -0.8
584,175 + OHPLBJKB_00572 0.69 +2.0
584,176 - OHPLBJKB_00572 0.69 -0.4
584,213 - OHPLBJKB_00572 0.74 -1.1
584,287 + OHPLBJKB_00572 0.83 -0.7
584,307 + OHPLBJKB_00572 0.85 -1.9
584,307 + OHPLBJKB_00572 0.85 -0.2
584,308 - OHPLBJKB_00572 0.85 +2.0
584,311 + OHPLBJKB_00572 0.86 +2.7
584,311 + OHPLBJKB_00572 0.86 +0.4
584,311 + OHPLBJKB_00572 0.86 -0.9

Or see this region's nucleotide sequence