Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00471

Experiment: hib MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00470 and OHPLBJKB_00471 are separated by 153 nucleotidesOHPLBJKB_00471 and OHPLBJKB_00472 are separated by 193 nucleotides OHPLBJKB_00470: OHPLBJKB_00470 - Periplasmic pH-dependent serine endoprotease DegQ, at 485,203 to 486,570 _00470 OHPLBJKB_00471: OHPLBJKB_00471 - Inner membrane protein YhcB, at 486,724 to 487,122 _00471 OHPLBJKB_00472: OHPLBJKB_00472 - Cell division protein ZapE, at 487,316 to 488,443 _00472 Position (kb) 486 487 488Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 485.764 kb on + strand, within OHPLBJKB_00470at 485.823 kb on + strand, within OHPLBJKB_00470at 485.824 kb on - strand, within OHPLBJKB_00470at 485.826 kb on + strand, within OHPLBJKB_00470at 485.897 kb on - strand, within OHPLBJKB_00470at 485.914 kb on + strand, within OHPLBJKB_00470at 485.915 kb on - strand, within OHPLBJKB_00470at 485.915 kb on - strand, within OHPLBJKB_00470at 485.917 kb on + strand, within OHPLBJKB_00470at 485.918 kb on - strand, within OHPLBJKB_00470at 485.918 kb on - strand, within OHPLBJKB_00470at 485.918 kb on - strand, within OHPLBJKB_00470at 485.918 kb on - strand, within OHPLBJKB_00470at 485.918 kb on - strand, within OHPLBJKB_00470at 486.263 kb on + strand, within OHPLBJKB_00470at 486.263 kb on + strand, within OHPLBJKB_00470at 486.264 kb on - strand, within OHPLBJKB_00470at 486.270 kb on + strand, within OHPLBJKB_00470at 486.532 kb on + strandat 486.664 kb on + strandat 486.665 kb on - strandat 486.665 kb on - strandat 486.774 kb on - strand, within OHPLBJKB_00471at 486.834 kb on + strand, within OHPLBJKB_00471at 486.938 kb on - strand, within OHPLBJKB_00471at 486.938 kb on - strand, within OHPLBJKB_00471at 486.999 kb on + strand, within OHPLBJKB_00471at 486.999 kb on + strand, within OHPLBJKB_00471at 487.040 kb on - strand, within OHPLBJKB_00471at 487.045 kb on - strand, within OHPLBJKB_00471at 487.051 kb on - strand, within OHPLBJKB_00471at 487.102 kb on + strandat 487.103 kb on - strandat 487.103 kb on - strandat 487.110 kb on - strandat 487.196 kb on + strandat 487.196 kb on + strandat 487.197 kb on - strandat 487.197 kb on - strandat 487.197 kb on - strandat 487.205 kb on + strandat 487.206 kb on - strandat 487.248 kb on - strandat 487.310 kb on - strandat 487.417 kb on + strandat 487.418 kb on - strandat 487.418 kb on - strandat 487.418 kb on - strandat 487.418 kb on - strandat 487.421 kb on + strandat 487.438 kb on + strand, within OHPLBJKB_00472at 487.470 kb on + strand, within OHPLBJKB_00472at 487.536 kb on + strand, within OHPLBJKB_00472at 487.536 kb on + strand, within OHPLBJKB_00472at 487.536 kb on + strand, within OHPLBJKB_00472at 487.536 kb on + strand, within OHPLBJKB_00472at 487.536 kb on + strand, within OHPLBJKB_00472at 487.536 kb on + strand, within OHPLBJKB_00472at 487.536 kb on + strand, within OHPLBJKB_00472at 487.536 kb on + strand, within OHPLBJKB_00472at 487.536 kb on + strand, within OHPLBJKB_00472at 487.537 kb on - strand, within OHPLBJKB_00472at 487.537 kb on - strand, within OHPLBJKB_00472at 487.537 kb on - strand, within OHPLBJKB_00472at 487.537 kb on - strand, within OHPLBJKB_00472at 487.537 kb on - strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.538 kb on + strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.539 kb on - strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.540 kb on + strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.541 kb on - strand, within OHPLBJKB_00472at 487.589 kb on + strand, within OHPLBJKB_00472at 487.589 kb on + strand, within OHPLBJKB_00472at 487.639 kb on + strand, within OHPLBJKB_00472at 487.639 kb on + strand, within OHPLBJKB_00472at 487.662 kb on + strand, within OHPLBJKB_00472at 487.662 kb on + strand, within OHPLBJKB_00472at 487.663 kb on - strand, within OHPLBJKB_00472at 487.663 kb on - strand, within OHPLBJKB_00472at 487.663 kb on - strand, within OHPLBJKB_00472at 487.671 kb on + strand, within OHPLBJKB_00472at 487.700 kb on - strand, within OHPLBJKB_00472at 487.762 kb on + strand, within OHPLBJKB_00472at 487.762 kb on + strand, within OHPLBJKB_00472at 487.762 kb on + strand, within OHPLBJKB_00472at 487.763 kb on - strand, within OHPLBJKB_00472at 487.779 kb on + strand, within OHPLBJKB_00472at 487.779 kb on + strand, within OHPLBJKB_00472at 487.779 kb on + strand, within OHPLBJKB_00472at 487.780 kb on - strand, within OHPLBJKB_00472at 487.780 kb on - strand, within OHPLBJKB_00472at 487.780 kb on - strand, within OHPLBJKB_00472at 487.780 kb on - strand, within OHPLBJKB_00472at 487.819 kb on + strand, within OHPLBJKB_00472at 487.909 kb on + strand, within OHPLBJKB_00472at 487.926 kb on + strand, within OHPLBJKB_00472at 487.926 kb on + strand, within OHPLBJKB_00472at 487.926 kb on + strand, within OHPLBJKB_00472at 487.927 kb on - strand, within OHPLBJKB_00472at 487.927 kb on - strand, within OHPLBJKB_00472at 487.963 kb on + strand, within OHPLBJKB_00472at 487.963 kb on + strand, within OHPLBJKB_00472at 487.964 kb on - strand, within OHPLBJKB_00472at 487.964 kb on - strand, within OHPLBJKB_00472at 487.964 kb on - strand, within OHPLBJKB_00472at 488.031 kb on + strand, within OHPLBJKB_00472at 488.031 kb on + strand, within OHPLBJKB_00472at 488.031 kb on + strand, within OHPLBJKB_00472at 488.031 kb on + strand, within OHPLBJKB_00472at 488.031 kb on + strand, within OHPLBJKB_00472at 488.032 kb on - strand, within OHPLBJKB_00472at 488.032 kb on - strand, within OHPLBJKB_00472at 488.032 kb on - strand, within OHPLBJKB_00472at 488.032 kb on - strand, within OHPLBJKB_00472at 488.032 kb on - strand, within OHPLBJKB_00472at 488.032 kb on - strand, within OHPLBJKB_00472at 488.032 kb on - strand, within OHPLBJKB_00472

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
remove
485,764 + OHPLBJKB_00470 0.41 -0.5
485,823 + OHPLBJKB_00470 0.45 -2.8
485,824 - OHPLBJKB_00470 0.45 +0.0
485,826 + OHPLBJKB_00470 0.46 -0.7
485,897 - OHPLBJKB_00470 0.51 +0.1
485,914 + OHPLBJKB_00470 0.52 -0.1
485,915 - OHPLBJKB_00470 0.52 -0.8
485,915 - OHPLBJKB_00470 0.52 -1.3
485,917 + OHPLBJKB_00470 0.52 -0.8
485,918 - OHPLBJKB_00470 0.52 +1.4
485,918 - OHPLBJKB_00470 0.52 +1.3
485,918 - OHPLBJKB_00470 0.52 -0.9
485,918 - OHPLBJKB_00470 0.52 +0.2
485,918 - OHPLBJKB_00470 0.52 -1.0
486,263 + OHPLBJKB_00470 0.77 +1.0
486,263 + OHPLBJKB_00470 0.77 +0.7
486,264 - OHPLBJKB_00470 0.78 +0.7
486,270 + OHPLBJKB_00470 0.78 +0.1
486,532 + +0.5
486,664 + -1.8
486,665 - +0.8
486,665 - -1.1
486,774 - OHPLBJKB_00471 0.13 -2.1
486,834 + OHPLBJKB_00471 0.28 -0.4
486,938 - OHPLBJKB_00471 0.54 -0.2
486,938 - OHPLBJKB_00471 0.54 -1.3
486,999 + OHPLBJKB_00471 0.69 -0.0
486,999 + OHPLBJKB_00471 0.69 +0.6
487,040 - OHPLBJKB_00471 0.79 -1.0
487,045 - OHPLBJKB_00471 0.80 -0.2
487,051 - OHPLBJKB_00471 0.82 +0.3
487,102 + +1.0
487,103 - -1.0
487,103 - +0.4
487,110 - -0.6
487,196 + -0.9
487,196 + -0.0
487,197 - -0.3
487,197 - +0.1
487,197 - +0.1
487,205 + +2.0
487,206 - +0.1
487,248 - -2.0
487,310 - +2.0
487,417 + +0.0
487,418 - +0.4
487,418 - +2.2
487,418 - +2.0
487,418 - -1.2
487,421 + -2.2
487,438 + OHPLBJKB_00472 0.11 +0.1
487,470 + OHPLBJKB_00472 0.14 -1.5
487,536 + OHPLBJKB_00472 0.20 -0.7
487,536 + OHPLBJKB_00472 0.20 -2.5
487,536 + OHPLBJKB_00472 0.20 -0.1
487,536 + OHPLBJKB_00472 0.20 +0.1
487,536 + OHPLBJKB_00472 0.20 -1.2
487,536 + OHPLBJKB_00472 0.20 -1.5
487,536 + OHPLBJKB_00472 0.20 +0.3
487,536 + OHPLBJKB_00472 0.20 -2.5
487,536 + OHPLBJKB_00472 0.20 +0.4
487,537 - OHPLBJKB_00472 0.20 +0.3
487,537 - OHPLBJKB_00472 0.20 -1.6
487,537 - OHPLBJKB_00472 0.20 +0.9
487,537 - OHPLBJKB_00472 0.20 +0.7
487,537 - OHPLBJKB_00472 0.20 -1.2
487,538 + OHPLBJKB_00472 0.20 +0.4
487,538 + OHPLBJKB_00472 0.20 -1.5
487,538 + OHPLBJKB_00472 0.20 +0.2
487,538 + OHPLBJKB_00472 0.20 -1.0
487,538 + OHPLBJKB_00472 0.20 +0.6
487,538 + OHPLBJKB_00472 0.20 +0.1
487,538 + OHPLBJKB_00472 0.20 -2.9
487,538 + OHPLBJKB_00472 0.20 +2.7
487,538 + OHPLBJKB_00472 0.20 +1.1
487,538 + OHPLBJKB_00472 0.20 +0.4
487,538 + OHPLBJKB_00472 0.20 -0.5
487,538 + OHPLBJKB_00472 0.20 +0.8
487,538 + OHPLBJKB_00472 0.20 -0.2
487,538 + OHPLBJKB_00472 0.20 +1.9
487,538 + OHPLBJKB_00472 0.20 -0.9
487,538 + OHPLBJKB_00472 0.20 -0.3
487,538 + OHPLBJKB_00472 0.20 -0.2
487,538 + OHPLBJKB_00472 0.20 -2.6
487,538 + OHPLBJKB_00472 0.20 +1.1
487,538 + OHPLBJKB_00472 0.20 -0.8
487,538 + OHPLBJKB_00472 0.20 +6.8
487,538 + OHPLBJKB_00472 0.20 +0.5
487,538 + OHPLBJKB_00472 0.20 +2.0
487,539 - OHPLBJKB_00472 0.20 +0.7
487,539 - OHPLBJKB_00472 0.20 +1.7
487,539 - OHPLBJKB_00472 0.20 -1.9
487,539 - OHPLBJKB_00472 0.20 -2.8
487,539 - OHPLBJKB_00472 0.20 +1.0
487,539 - OHPLBJKB_00472 0.20 +1.1
487,539 - OHPLBJKB_00472 0.20 +1.0
487,539 - OHPLBJKB_00472 0.20 -1.8
487,539 - OHPLBJKB_00472 0.20 -2.0
487,539 - OHPLBJKB_00472 0.20 +0.5
487,539 - OHPLBJKB_00472 0.20 +0.8
487,539 - OHPLBJKB_00472 0.20 +0.9
487,539 - OHPLBJKB_00472 0.20 +0.5
487,539 - OHPLBJKB_00472 0.20 -0.0
487,539 - OHPLBJKB_00472 0.20 -0.9
487,539 - OHPLBJKB_00472 0.20 -0.0
487,539 - OHPLBJKB_00472 0.20 -0.1
487,539 - OHPLBJKB_00472 0.20 +0.9
487,539 - OHPLBJKB_00472 0.20 +1.4
487,539 - OHPLBJKB_00472 0.20 -0.3
487,539 - OHPLBJKB_00472 0.20 -2.8
487,540 + OHPLBJKB_00472 0.20 -0.4
487,540 + OHPLBJKB_00472 0.20 -0.0
487,540 + OHPLBJKB_00472 0.20 +0.2
487,540 + OHPLBJKB_00472 0.20 -1.9
487,540 + OHPLBJKB_00472 0.20 +1.3
487,540 + OHPLBJKB_00472 0.20 -2.5
487,540 + OHPLBJKB_00472 0.20 +2.0
487,540 + OHPLBJKB_00472 0.20 +1.2
487,540 + OHPLBJKB_00472 0.20 -2.7
487,540 + OHPLBJKB_00472 0.20 -1.2
487,540 + OHPLBJKB_00472 0.20 +0.9
487,540 + OHPLBJKB_00472 0.20 +0.2
487,540 + OHPLBJKB_00472 0.20 +0.6
487,540 + OHPLBJKB_00472 0.20 -1.9
487,540 + OHPLBJKB_00472 0.20 -2.7
487,541 - OHPLBJKB_00472 0.20 +1.3
487,541 - OHPLBJKB_00472 0.20 -0.9
487,541 - OHPLBJKB_00472 0.20 -1.0
487,541 - OHPLBJKB_00472 0.20 +0.9
487,541 - OHPLBJKB_00472 0.20 +2.5
487,541 - OHPLBJKB_00472 0.20 -1.7
487,541 - OHPLBJKB_00472 0.20 +1.3
487,541 - OHPLBJKB_00472 0.20 -1.7
487,541 - OHPLBJKB_00472 0.20 -1.5
487,541 - OHPLBJKB_00472 0.20 -1.1
487,541 - OHPLBJKB_00472 0.20 -0.9
487,541 - OHPLBJKB_00472 0.20 +1.1
487,541 - OHPLBJKB_00472 0.20 -0.0
487,541 - OHPLBJKB_00472 0.20 -0.1
487,541 - OHPLBJKB_00472 0.20 -1.0
487,541 - OHPLBJKB_00472 0.20 -0.1
487,541 - OHPLBJKB_00472 0.20 -0.3
487,589 + OHPLBJKB_00472 0.24 -0.2
487,589 + OHPLBJKB_00472 0.24 +1.1
487,639 + OHPLBJKB_00472 0.29 +0.3
487,639 + OHPLBJKB_00472 0.29 -1.3
487,662 + OHPLBJKB_00472 0.31 -1.7
487,662 + OHPLBJKB_00472 0.31 +1.8
487,663 - OHPLBJKB_00472 0.31 -0.0
487,663 - OHPLBJKB_00472 0.31 +2.1
487,663 - OHPLBJKB_00472 0.31 -1.7
487,671 + OHPLBJKB_00472 0.31 -0.0
487,700 - OHPLBJKB_00472 0.34 -1.2
487,762 + OHPLBJKB_00472 0.40 -0.0
487,762 + OHPLBJKB_00472 0.40 -0.5
487,762 + OHPLBJKB_00472 0.40 +0.3
487,763 - OHPLBJKB_00472 0.40 -1.0
487,779 + OHPLBJKB_00472 0.41 +0.1
487,779 + OHPLBJKB_00472 0.41 -1.5
487,779 + OHPLBJKB_00472 0.41 -0.1
487,780 - OHPLBJKB_00472 0.41 -2.1
487,780 - OHPLBJKB_00472 0.41 -0.3
487,780 - OHPLBJKB_00472 0.41 +0.2
487,780 - OHPLBJKB_00472 0.41 -0.4
487,819 + OHPLBJKB_00472 0.45 +0.0
487,909 + OHPLBJKB_00472 0.53 +0.6
487,926 + OHPLBJKB_00472 0.54 -0.9
487,926 + OHPLBJKB_00472 0.54 -0.9
487,926 + OHPLBJKB_00472 0.54 +1.3
487,927 - OHPLBJKB_00472 0.54 -1.1
487,927 - OHPLBJKB_00472 0.54 +0.9
487,963 + OHPLBJKB_00472 0.57 -0.5
487,963 + OHPLBJKB_00472 0.57 +0.6
487,964 - OHPLBJKB_00472 0.57 -1.9
487,964 - OHPLBJKB_00472 0.57 +1.2
487,964 - OHPLBJKB_00472 0.57 +0.5
488,031 + OHPLBJKB_00472 0.63 -0.7
488,031 + OHPLBJKB_00472 0.63 +1.0
488,031 + OHPLBJKB_00472 0.63 -1.5
488,031 + OHPLBJKB_00472 0.63 -0.9
488,031 + OHPLBJKB_00472 0.63 -2.0
488,032 - OHPLBJKB_00472 0.63 +0.1
488,032 - OHPLBJKB_00472 0.63 -2.2
488,032 - OHPLBJKB_00472 0.63 +1.3
488,032 - OHPLBJKB_00472 0.63 +1.1
488,032 - OHPLBJKB_00472 0.63 +0.3
488,032 - OHPLBJKB_00472 0.63 -3.8
488,032 - OHPLBJKB_00472 0.63 -1.4

Or see this region's nucleotide sequence