Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00316

Experiment: hib MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00315 and OHPLBJKB_00316 are separated by 106 nucleotidesOHPLBJKB_00316 and OHPLBJKB_00317 are separated by 17 nucleotidesOHPLBJKB_00317 and OHPLBJKB_00318 overlap by 8 nucleotides OHPLBJKB_00315: OHPLBJKB_00315 - Cell division protein DamX, at 349,238 to 350,536 _00315 OHPLBJKB_00316: OHPLBJKB_00316 - DNA adenine methylase, at 350,643 to 351,479 _00316 OHPLBJKB_00317: OHPLBJKB_00317 - Ribulose-phosphate 3-epimerase, at 351,497 to 352,174 _00317 OHPLBJKB_00318: OHPLBJKB_00318 - Phosphoglycolate phosphatase, at 352,167 to 352,925 _00318 Position (kb) 350 351 352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 349.660 kb on + strand, within OHPLBJKB_00315at 349.660 kb on + strand, within OHPLBJKB_00315at 349.772 kb on - strand, within OHPLBJKB_00315at 349.772 kb on - strand, within OHPLBJKB_00315at 349.900 kb on + strand, within OHPLBJKB_00315at 349.900 kb on + strand, within OHPLBJKB_00315at 350.093 kb on - strand, within OHPLBJKB_00315at 350.093 kb on - strand, within OHPLBJKB_00315at 350.144 kb on - strand, within OHPLBJKB_00315at 350.183 kb on - strand, within OHPLBJKB_00315at 350.291 kb on + strand, within OHPLBJKB_00315at 350.291 kb on + strand, within OHPLBJKB_00315at 350.317 kb on + strand, within OHPLBJKB_00315at 350.321 kb on + strand, within OHPLBJKB_00315at 350.321 kb on + strand, within OHPLBJKB_00315at 350.322 kb on - strand, within OHPLBJKB_00315at 350.366 kb on + strand, within OHPLBJKB_00315at 350.366 kb on + strand, within OHPLBJKB_00315at 350.367 kb on - strand, within OHPLBJKB_00315at 350.375 kb on + strand, within OHPLBJKB_00315at 350.405 kb on + strand, within OHPLBJKB_00315at 350.405 kb on + strand, within OHPLBJKB_00315at 350.406 kb on - strand, within OHPLBJKB_00315at 350.426 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.461 kb on + strandat 350.462 kb on - strandat 350.517 kb on + strandat 350.534 kb on + strandat 350.534 kb on + strandat 350.534 kb on + strandat 350.535 kb on - strandat 350.561 kb on + strandat 350.627 kb on + strandat 350.627 kb on + strandat 350.627 kb on + strandat 350.627 kb on + strandat 350.628 kb on - strandat 350.628 kb on - strandat 350.628 kb on - strandat 350.628 kb on - strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.631 kb on + strandat 350.632 kb on - strandat 350.632 kb on - strandat 350.635 kb on + strandat 350.685 kb on + strandat 350.702 kb on + strandat 350.749 kb on + strand, within OHPLBJKB_00316at 350.750 kb on - strand, within OHPLBJKB_00316at 350.750 kb on - strand, within OHPLBJKB_00316at 350.750 kb on - strand, within OHPLBJKB_00316at 350.792 kb on + strand, within OHPLBJKB_00316at 350.829 kb on + strand, within OHPLBJKB_00316at 350.829 kb on + strand, within OHPLBJKB_00316at 350.829 kb on + strand, within OHPLBJKB_00316at 350.829 kb on + strand, within OHPLBJKB_00316at 350.830 kb on - strand, within OHPLBJKB_00316at 350.830 kb on - strand, within OHPLBJKB_00316at 350.830 kb on - strand, within OHPLBJKB_00316at 350.832 kb on - strand, within OHPLBJKB_00316at 350.850 kb on - strand, within OHPLBJKB_00316at 350.863 kb on + strand, within OHPLBJKB_00316at 350.864 kb on - strand, within OHPLBJKB_00316at 350.864 kb on - strand, within OHPLBJKB_00316at 350.913 kb on + strand, within OHPLBJKB_00316at 350.914 kb on - strand, within OHPLBJKB_00316at 350.916 kb on + strand, within OHPLBJKB_00316at 350.978 kb on - strand, within OHPLBJKB_00316at 350.979 kb on + strand, within OHPLBJKB_00316at 351.087 kb on + strand, within OHPLBJKB_00316at 351.229 kb on - strand, within OHPLBJKB_00316at 351.246 kb on - strand, within OHPLBJKB_00316at 351.393 kb on - strand, within OHPLBJKB_00316at 351.393 kb on - strand, within OHPLBJKB_00316at 351.395 kb on - strand, within OHPLBJKB_00316at 351.416 kb on + strandat 351.621 kb on - strand, within OHPLBJKB_00317at 352.161 kb on + strandat 352.161 kb on + strandat 352.172 kb on + strandat 352.172 kb on + strandat 352.185 kb on - strandat 352.214 kb on + strandat 352.252 kb on + strand, within OHPLBJKB_00318at 352.266 kb on + strand, within OHPLBJKB_00318at 352.266 kb on + strand, within OHPLBJKB_00318at 352.267 kb on - strand, within OHPLBJKB_00318at 352.308 kb on - strand, within OHPLBJKB_00318at 352.397 kb on + strand, within OHPLBJKB_00318at 352.438 kb on + strand, within OHPLBJKB_00318at 352.439 kb on - strand, within OHPLBJKB_00318at 352.439 kb on - strand, within OHPLBJKB_00318at 352.439 kb on - strand, within OHPLBJKB_00318at 352.442 kb on + strand, within OHPLBJKB_00318at 352.442 kb on + strand, within OHPLBJKB_00318at 352.442 kb on + strand, within OHPLBJKB_00318at 352.442 kb on + strand, within OHPLBJKB_00318at 352.442 kb on + strand, within OHPLBJKB_00318at 352.442 kb on + strand, within OHPLBJKB_00318at 352.442 kb on + strand, within OHPLBJKB_00318at 352.443 kb on - strand, within OHPLBJKB_00318at 352.443 kb on - strand, within OHPLBJKB_00318at 352.443 kb on - strand, within OHPLBJKB_00318at 352.452 kb on - strand, within OHPLBJKB_00318at 352.471 kb on - strand, within OHPLBJKB_00318

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
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349,660 + OHPLBJKB_00315 0.32 -0.8
349,660 + OHPLBJKB_00315 0.32 -2.2
349,772 - OHPLBJKB_00315 0.41 -2.3
349,772 - OHPLBJKB_00315 0.41 -0.8
349,900 + OHPLBJKB_00315 0.51 -2.7
349,900 + OHPLBJKB_00315 0.51 -0.1
350,093 - OHPLBJKB_00315 0.66 -1.7
350,093 - OHPLBJKB_00315 0.66 +0.0
350,144 - OHPLBJKB_00315 0.70 -1.5
350,183 - OHPLBJKB_00315 0.73 -1.6
350,291 + OHPLBJKB_00315 0.81 +0.1
350,291 + OHPLBJKB_00315 0.81 +0.3
350,317 + OHPLBJKB_00315 0.83 +1.4
350,321 + OHPLBJKB_00315 0.83 -0.7
350,321 + OHPLBJKB_00315 0.83 +0.0
350,322 - OHPLBJKB_00315 0.83 +0.0
350,366 + OHPLBJKB_00315 0.87 +0.4
350,366 + OHPLBJKB_00315 0.87 -1.1
350,367 - OHPLBJKB_00315 0.87 -0.4
350,375 + OHPLBJKB_00315 0.88 +0.6
350,405 + OHPLBJKB_00315 0.90 -3.1
350,405 + OHPLBJKB_00315 0.90 +0.5
350,406 - OHPLBJKB_00315 0.90 +0.6
350,426 + -0.2
350,461 + -1.4
350,461 + +0.2
350,461 + +0.5
350,461 + +0.2
350,461 + -1.0
350,461 + +0.4
350,461 + -0.4
350,462 - -1.5
350,517 + +0.0
350,534 + +0.1
350,534 + -0.9
350,534 + -1.5
350,535 - -1.0
350,561 + -0.2
350,627 + -1.1
350,627 + +0.3
350,627 + +0.4
350,627 + +0.5
350,628 - -1.4
350,628 - -2.6
350,628 - -2.3
350,628 - -0.7
350,631 + -2.5
350,631 + -1.5
350,631 + +0.7
350,631 + -0.5
350,631 + -2.2
350,631 + -1.1
350,632 - -0.7
350,632 - -1.3
350,635 + +1.1
350,685 + -0.9
350,702 + +6.9
350,749 + OHPLBJKB_00316 0.13 -0.2
350,750 - OHPLBJKB_00316 0.13 -1.1
350,750 - OHPLBJKB_00316 0.13 -1.0
350,750 - OHPLBJKB_00316 0.13 +0.0
350,792 + OHPLBJKB_00316 0.18 +0.3
350,829 + OHPLBJKB_00316 0.22 -1.2
350,829 + OHPLBJKB_00316 0.22 +1.7
350,829 + OHPLBJKB_00316 0.22 +0.0
350,829 + OHPLBJKB_00316 0.22 +1.0
350,830 - OHPLBJKB_00316 0.22 +0.3
350,830 - OHPLBJKB_00316 0.22 -1.5
350,830 - OHPLBJKB_00316 0.22 +0.3
350,832 - OHPLBJKB_00316 0.23 -0.8
350,850 - OHPLBJKB_00316 0.25 -0.7
350,863 + OHPLBJKB_00316 0.26 +0.6
350,864 - OHPLBJKB_00316 0.26 +0.6
350,864 - OHPLBJKB_00316 0.26 -0.2
350,913 + OHPLBJKB_00316 0.32 +1.0
350,914 - OHPLBJKB_00316 0.32 -0.9
350,916 + OHPLBJKB_00316 0.33 +0.6
350,978 - OHPLBJKB_00316 0.40 +1.0
350,979 + OHPLBJKB_00316 0.40 -0.2
351,087 + OHPLBJKB_00316 0.53 -0.2
351,229 - OHPLBJKB_00316 0.70 -0.2
351,246 - OHPLBJKB_00316 0.72 -1.2
351,393 - OHPLBJKB_00316 0.90 -0.6
351,393 - OHPLBJKB_00316 0.90 -0.2
351,395 - OHPLBJKB_00316 0.90 +0.6
351,416 + +0.0
351,621 - OHPLBJKB_00317 0.18 -0.2
352,161 + -1.2
352,161 + -1.8
352,172 + -1.5
352,172 + -1.7
352,185 - +0.9
352,214 + +0.0
352,252 + OHPLBJKB_00318 0.11 -3.0
352,266 + OHPLBJKB_00318 0.13 -1.5
352,266 + OHPLBJKB_00318 0.13 -0.1
352,267 - OHPLBJKB_00318 0.13 +0.2
352,308 - OHPLBJKB_00318 0.19 -0.7
352,397 + OHPLBJKB_00318 0.30 +0.8
352,438 + OHPLBJKB_00318 0.36 -1.8
352,439 - OHPLBJKB_00318 0.36 -0.1
352,439 - OHPLBJKB_00318 0.36 -1.7
352,439 - OHPLBJKB_00318 0.36 +0.2
352,442 + OHPLBJKB_00318 0.36 -1.9
352,442 + OHPLBJKB_00318 0.36 -1.5
352,442 + OHPLBJKB_00318 0.36 -1.8
352,442 + OHPLBJKB_00318 0.36 -1.0
352,442 + OHPLBJKB_00318 0.36 -0.2
352,442 + OHPLBJKB_00318 0.36 -1.4
352,442 + OHPLBJKB_00318 0.36 +1.2
352,443 - OHPLBJKB_00318 0.36 -3.9
352,443 - OHPLBJKB_00318 0.36 -1.1
352,443 - OHPLBJKB_00318 0.36 -0.9
352,452 - OHPLBJKB_00318 0.38 +0.5
352,471 - OHPLBJKB_00318 0.40 -0.7

Or see this region's nucleotide sequence