Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00980

Experiment: Ammonium Nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00979 and MPMX26_00980 are separated by 122 nucleotidesMPMX26_00980 and MPMX26_00981 are separated by 69 nucleotidesMPMX26_00981 and MPMX26_00982 are separated by 85 nucleotides MPMX26_00979: MPMX26_00979 - hypothetical protein, at 1,031,429 to 1,033,315 _00979 MPMX26_00980: MPMX26_00980 - Diguanylate cyclase DosC, at 1,033,438 to 1,034,796 _00980 MPMX26_00981: MPMX26_00981 - GTP cyclohydrolase 1, at 1,034,866 to 1,035,420 _00981 MPMX26_00982: MPMX26_00982 - Endonuclease MutS2, at 1,035,506 to 1,036,195 _00982 Position (kb) 1033 1034 1035Strain fitness (log2 ratio) -2 -1 0 1at 1033.295 kb on + strandat 1033.444 kb on + strandat 1033.512 kb on + strandat 1033.621 kb on + strand, within MPMX26_00980at 1033.732 kb on + strand, within MPMX26_00980at 1033.858 kb on + strand, within MPMX26_00980at 1033.885 kb on + strand, within MPMX26_00980at 1033.992 kb on + strand, within MPMX26_00980at 1033.992 kb on + strand, within MPMX26_00980at 1034.191 kb on + strand, within MPMX26_00980at 1034.205 kb on + strand, within MPMX26_00980at 1034.401 kb on + strand, within MPMX26_00980at 1034.401 kb on + strand, within MPMX26_00980at 1034.515 kb on + strand, within MPMX26_00980at 1034.581 kb on + strand, within MPMX26_00980at 1034.593 kb on + strand, within MPMX26_00980at 1034.646 kb on + strand, within MPMX26_00980at 1034.646 kb on + strand, within MPMX26_00980at 1034.677 kb on + strandat 1034.770 kb on + strandat 1034.782 kb on + strandat 1034.881 kb on - strandat 1035.465 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.545 kb on - strandat 1035.547 kb on - strandat 1035.556 kb on - strandat 1035.556 kb on - strandat 1035.556 kb on - strandat 1035.562 kb on - strandat 1035.604 kb on - strand, within MPMX26_00982at 1035.604 kb on - strand, within MPMX26_00982at 1035.604 kb on - strand, within MPMX26_00982at 1035.604 kb on - strand, within MPMX26_00982at 1035.604 kb on - strand, within MPMX26_00982at 1035.604 kb on - strand, within MPMX26_00982at 1035.604 kb on - strand, within MPMX26_00982at 1035.604 kb on - strand, within MPMX26_00982at 1035.614 kb on - strand, within MPMX26_00982at 1035.614 kb on - strand, within MPMX26_00982at 1035.619 kb on - strand, within MPMX26_00982at 1035.660 kb on - strand, within MPMX26_00982at 1035.661 kb on - strand, within MPMX26_00982at 1035.668 kb on - strand, within MPMX26_00982at 1035.683 kb on - strand, within MPMX26_00982at 1035.748 kb on - strand, within MPMX26_00982at 1035.771 kb on - strand, within MPMX26_00982at 1035.779 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982at 1035.780 kb on - strand, within MPMX26_00982

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium Nitrate (N)
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1,033,295 + -0.6
1,033,444 + -0.2
1,033,512 + -0.4
1,033,621 + MPMX26_00980 0.13 -0.1
1,033,732 + MPMX26_00980 0.22 -1.2
1,033,858 + MPMX26_00980 0.31 -1.6
1,033,885 + MPMX26_00980 0.33 +0.8
1,033,992 + MPMX26_00980 0.41 +0.3
1,033,992 + MPMX26_00980 0.41 +1.6
1,034,191 + MPMX26_00980 0.55 +0.1
1,034,205 + MPMX26_00980 0.56 -0.4
1,034,401 + MPMX26_00980 0.71 -1.5
1,034,401 + MPMX26_00980 0.71 +0.2
1,034,515 + MPMX26_00980 0.79 -1.1
1,034,581 + MPMX26_00980 0.84 +0.1
1,034,593 + MPMX26_00980 0.85 -1.0
1,034,646 + MPMX26_00980 0.89 -0.2
1,034,646 + MPMX26_00980 0.89 +0.4
1,034,677 + -0.0
1,034,770 + -0.3
1,034,782 + +0.2
1,034,881 - -1.9
1,035,465 - +0.7
1,035,545 - -0.2
1,035,545 - +0.0
1,035,545 - +0.2
1,035,545 - +0.3
1,035,545 - +0.2
1,035,545 - +0.3
1,035,545 - +0.6
1,035,545 - -0.0
1,035,545 - +0.2
1,035,545 - +0.1
1,035,545 - +1.0
1,035,545 - +0.4
1,035,545 - +0.4
1,035,545 - +0.2
1,035,545 - -0.1
1,035,545 - -0.3
1,035,547 - +0.2
1,035,556 - +0.3
1,035,556 - +0.0
1,035,556 - +0.1
1,035,562 - +0.0
1,035,604 - MPMX26_00982 0.14 +0.1
1,035,604 - MPMX26_00982 0.14 +0.0
1,035,604 - MPMX26_00982 0.14 +0.3
1,035,604 - MPMX26_00982 0.14 +0.1
1,035,604 - MPMX26_00982 0.14 -0.2
1,035,604 - MPMX26_00982 0.14 +0.3
1,035,604 - MPMX26_00982 0.14 +0.5
1,035,604 - MPMX26_00982 0.14 +0.1
1,035,614 - MPMX26_00982 0.16 +0.3
1,035,614 - MPMX26_00982 0.16 -0.2
1,035,619 - MPMX26_00982 0.16 +0.3
1,035,660 - MPMX26_00982 0.22 -0.1
1,035,661 - MPMX26_00982 0.22 -1.1
1,035,668 - MPMX26_00982 0.23 +0.2
1,035,683 - MPMX26_00982 0.26 +0.1
1,035,748 - MPMX26_00982 0.35 +1.2
1,035,771 - MPMX26_00982 0.38 +0.1
1,035,779 - MPMX26_00982 0.40 -0.1
1,035,780 - MPMX26_00982 0.40 +0.2
1,035,780 - MPMX26_00982 0.40 +0.2
1,035,780 - MPMX26_00982 0.40 -0.5
1,035,780 - MPMX26_00982 0.40 +0.3
1,035,780 - MPMX26_00982 0.40 -0.1
1,035,780 - MPMX26_00982 0.40 +0.3
1,035,780 - MPMX26_00982 0.40 +0.1
1,035,780 - MPMX26_00982 0.40 +0.1
1,035,780 - MPMX26_00982 0.40 +0.6
1,035,780 - MPMX26_00982 0.40 +0.3

Or see this region's nucleotide sequence