Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00178

Experiment: Ammonium Nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00176 and MPMX26_00177 are separated by 67 nucleotidesMPMX26_00177 and MPMX26_00178 are separated by 211 nucleotidesMPMX26_00178 and MPMX26_00179 are separated by 9 nucleotidesMPMX26_00179 and MPMX26_00180 are separated by 76 nucleotides MPMX26_00176: MPMX26_00176 - Glutamyl-Q tRNA(Asp) synthetase, at 190,074 to 190,928 _00176 MPMX26_00177: MPMX26_00177 - RNA polymerase-binding transcription factor DksA, at 190,996 to 191,529 _00177 MPMX26_00178: MPMX26_00178 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 191,741 to 192,550 _00178 MPMX26_00179: MPMX26_00179 - ADP-ribose pyrophosphatase, at 192,560 to 193,180 _00179 MPMX26_00180: MPMX26_00180 - Phosphomethylpyrimidine synthase, at 193,257 to 195,149 _00180 Position (kb) 191 192 193Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 190.757 kb on - strand, within MPMX26_00176at 190.757 kb on - strand, within MPMX26_00176at 190.757 kb on - strand, within MPMX26_00176at 190.757 kb on - strand, within MPMX26_00176at 190.757 kb on - strand, within MPMX26_00176at 190.767 kb on - strand, within MPMX26_00176at 190.767 kb on - strand, within MPMX26_00176at 190.773 kb on - strand, within MPMX26_00176at 190.773 kb on - strand, within MPMX26_00176at 190.774 kb on - strand, within MPMX26_00176at 190.783 kb on - strand, within MPMX26_00176at 190.783 kb on - strand, within MPMX26_00176at 190.783 kb on - strand, within MPMX26_00176at 190.834 kb on - strand, within MPMX26_00176at 190.836 kb on - strand, within MPMX26_00176at 190.846 kb on - strandat 190.876 kb on - strandat 190.881 kb on - strandat 190.911 kb on - strandat 190.920 kb on - strandat 190.920 kb on - strandat 190.921 kb on - strandat 190.935 kb on - strandat 190.971 kb on - strandat 191.053 kb on - strand, within MPMX26_00177at 191.053 kb on - strand, within MPMX26_00177at 191.078 kb on - strand, within MPMX26_00177at 191.078 kb on - strand, within MPMX26_00177at 191.078 kb on - strand, within MPMX26_00177at 191.078 kb on - strand, within MPMX26_00177at 191.078 kb on - strand, within MPMX26_00177at 191.078 kb on - strand, within MPMX26_00177at 191.088 kb on - strand, within MPMX26_00177at 191.094 kb on - strand, within MPMX26_00177at 191.125 kb on - strand, within MPMX26_00177at 191.130 kb on - strand, within MPMX26_00177at 191.157 kb on - strand, within MPMX26_00177at 191.177 kb on - strand, within MPMX26_00177at 191.255 kb on - strand, within MPMX26_00177at 191.255 kb on - strand, within MPMX26_00177at 191.260 kb on - strand, within MPMX26_00177at 191.260 kb on - strand, within MPMX26_00177at 191.280 kb on - strand, within MPMX26_00177at 191.292 kb on - strand, within MPMX26_00177at 191.307 kb on - strand, within MPMX26_00177at 191.354 kb on - strand, within MPMX26_00177at 191.362 kb on - strand, within MPMX26_00177at 191.396 kb on - strand, within MPMX26_00177at 191.396 kb on - strand, within MPMX26_00177at 191.401 kb on - strand, within MPMX26_00177at 191.417 kb on - strand, within MPMX26_00177at 191.419 kb on - strand, within MPMX26_00177at 191.419 kb on - strand, within MPMX26_00177at 191.422 kb on - strand, within MPMX26_00177at 191.505 kb on - strandat 191.536 kb on - strandat 191.541 kb on - strandat 191.553 kb on - strandat 191.610 kb on - strandat 191.672 kb on - strandat 191.680 kb on - strandat 191.680 kb on - strandat 191.680 kb on - strandat 191.680 kb on - strandat 191.680 kb on - strandat 191.694 kb on - strandat 191.797 kb on - strandat 191.820 kb on - strandat 191.825 kb on - strand, within MPMX26_00178at 191.851 kb on - strand, within MPMX26_00178at 191.852 kb on - strand, within MPMX26_00178at 191.852 kb on - strand, within MPMX26_00178at 191.862 kb on + strand, within MPMX26_00178at 191.883 kb on + strand, within MPMX26_00178at 191.891 kb on - strand, within MPMX26_00178at 191.891 kb on - strand, within MPMX26_00178at 191.891 kb on - strand, within MPMX26_00178at 191.896 kb on - strand, within MPMX26_00178at 191.901 kb on - strand, within MPMX26_00178at 191.901 kb on - strand, within MPMX26_00178at 191.901 kb on - strand, within MPMX26_00178at 191.906 kb on - strand, within MPMX26_00178at 191.909 kb on - strand, within MPMX26_00178at 191.956 kb on - strand, within MPMX26_00178at 191.956 kb on - strand, within MPMX26_00178at 191.956 kb on - strand, within MPMX26_00178at 191.956 kb on - strand, within MPMX26_00178at 191.956 kb on - strand, within MPMX26_00178at 191.956 kb on - strand, within MPMX26_00178at 191.956 kb on - strand, within MPMX26_00178at 191.956 kb on - strand, within MPMX26_00178at 191.956 kb on - strand, within MPMX26_00178at 191.988 kb on - strand, within MPMX26_00178at 191.988 kb on - strand, within MPMX26_00178at 191.993 kb on - strand, within MPMX26_00178at 191.993 kb on - strand, within MPMX26_00178at 192.040 kb on + strand, within MPMX26_00178at 192.040 kb on + strand, within MPMX26_00178at 192.103 kb on - strand, within MPMX26_00178at 192.140 kb on - strand, within MPMX26_00178at 192.140 kb on - strand, within MPMX26_00178at 192.140 kb on - strand, within MPMX26_00178at 192.140 kb on - strand, within MPMX26_00178at 192.140 kb on - strand, within MPMX26_00178at 192.140 kb on - strand, within MPMX26_00178at 192.142 kb on - strand, within MPMX26_00178at 192.178 kb on - strand, within MPMX26_00178at 192.178 kb on - strand, within MPMX26_00178at 192.311 kb on - strand, within MPMX26_00178at 192.311 kb on - strand, within MPMX26_00178at 192.332 kb on - strand, within MPMX26_00178at 192.339 kb on + strand, within MPMX26_00178at 192.342 kb on - strand, within MPMX26_00178at 192.344 kb on + strand, within MPMX26_00178at 192.361 kb on - strand, within MPMX26_00178at 192.397 kb on - strand, within MPMX26_00178at 192.424 kb on - strand, within MPMX26_00178at 192.435 kb on - strand, within MPMX26_00178at 192.442 kb on - strand, within MPMX26_00178at 192.452 kb on - strand, within MPMX26_00178at 192.452 kb on - strand, within MPMX26_00178at 192.457 kb on - strand, within MPMX26_00178at 192.542 kb on - strandat 192.586 kb on - strandat 192.597 kb on - strandat 192.597 kb on - strandat 192.742 kb on - strand, within MPMX26_00179at 192.758 kb on - strand, within MPMX26_00179at 192.758 kb on - strand, within MPMX26_00179at 192.758 kb on - strand, within MPMX26_00179at 192.758 kb on - strand, within MPMX26_00179at 192.758 kb on - strand, within MPMX26_00179at 192.771 kb on + strand, within MPMX26_00179at 192.771 kb on + strand, within MPMX26_00179at 192.774 kb on - strand, within MPMX26_00179at 192.774 kb on - strand, within MPMX26_00179at 192.774 kb on - strand, within MPMX26_00179at 192.779 kb on - strand, within MPMX26_00179at 192.779 kb on - strand, within MPMX26_00179at 192.779 kb on - strand, within MPMX26_00179at 192.779 kb on - strand, within MPMX26_00179at 192.784 kb on - strand, within MPMX26_00179at 192.784 kb on - strand, within MPMX26_00179at 192.862 kb on - strand, within MPMX26_00179at 192.863 kb on - strand, within MPMX26_00179at 192.871 kb on - strand, within MPMX26_00179at 192.873 kb on - strand, within MPMX26_00179at 192.873 kb on - strand, within MPMX26_00179at 192.873 kb on - strand, within MPMX26_00179at 192.880 kb on - strand, within MPMX26_00179at 192.902 kb on - strand, within MPMX26_00179at 192.937 kb on - strand, within MPMX26_00179at 192.953 kb on - strand, within MPMX26_00179at 192.953 kb on - strand, within MPMX26_00179at 192.953 kb on - strand, within MPMX26_00179at 192.953 kb on - strand, within MPMX26_00179at 192.953 kb on - strand, within MPMX26_00179at 192.953 kb on - strand, within MPMX26_00179at 192.953 kb on - strand, within MPMX26_00179at 193.010 kb on - strand, within MPMX26_00179at 193.042 kb on - strand, within MPMX26_00179at 193.042 kb on - strand, within MPMX26_00179at 193.045 kb on - strand, within MPMX26_00179at 193.055 kb on - strand, within MPMX26_00179at 193.107 kb on - strand, within MPMX26_00179at 193.107 kb on - strand, within MPMX26_00179at 193.107 kb on - strand, within MPMX26_00179at 193.107 kb on - strand, within MPMX26_00179at 193.163 kb on - strandat 193.173 kb on - strandat 193.173 kb on - strandat 193.183 kb on - strandat 193.224 kb on + strandat 193.275 kb on + strandat 193.275 kb on + strandat 193.283 kb on - strandat 193.293 kb on - strandat 193.308 kb on - strandat 193.360 kb on + strandat 193.360 kb on + strandat 193.373 kb on - strandat 193.377 kb on + strandat 193.385 kb on - strandat 193.413 kb on - strandat 193.461 kb on + strand, within MPMX26_00180at 193.464 kb on - strand, within MPMX26_00180at 193.492 kb on + strand, within MPMX26_00180at 193.500 kb on - strand, within MPMX26_00180at 193.500 kb on - strand, within MPMX26_00180

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium Nitrate (N)
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190,757 - MPMX26_00176 0.80 -0.3
190,757 - MPMX26_00176 0.80 -0.0
190,757 - MPMX26_00176 0.80 -0.3
190,757 - MPMX26_00176 0.80 +0.1
190,757 - MPMX26_00176 0.80 -0.1
190,767 - MPMX26_00176 0.81 -0.2
190,767 - MPMX26_00176 0.81 +0.4
190,773 - MPMX26_00176 0.82 +0.4
190,773 - MPMX26_00176 0.82 -0.0
190,774 - MPMX26_00176 0.82 -0.1
190,783 - MPMX26_00176 0.83 -1.0
190,783 - MPMX26_00176 0.83 +0.2
190,783 - MPMX26_00176 0.83 +0.0
190,834 - MPMX26_00176 0.89 -0.3
190,836 - MPMX26_00176 0.89 +0.1
190,846 - -0.0
190,876 - -0.7
190,881 - +0.2
190,911 - +0.2
190,920 - +0.3
190,920 - -0.1
190,921 - +0.1
190,935 - +0.1
190,971 - -0.1
191,053 - MPMX26_00177 0.11 -2.3
191,053 - MPMX26_00177 0.11 -1.6
191,078 - MPMX26_00177 0.15 -1.6
191,078 - MPMX26_00177 0.15 -1.5
191,078 - MPMX26_00177 0.15 -1.9
191,078 - MPMX26_00177 0.15 -2.5
191,078 - MPMX26_00177 0.15 -3.5
191,078 - MPMX26_00177 0.15 -3.2
191,088 - MPMX26_00177 0.17 -1.7
191,094 - MPMX26_00177 0.18 -1.5
191,125 - MPMX26_00177 0.24 -1.1
191,130 - MPMX26_00177 0.25 -1.1
191,157 - MPMX26_00177 0.30 -2.7
191,177 - MPMX26_00177 0.34 -2.8
191,255 - MPMX26_00177 0.49 -1.3
191,255 - MPMX26_00177 0.49 -2.5
191,260 - MPMX26_00177 0.49 -1.3
191,260 - MPMX26_00177 0.49 -1.9
191,280 - MPMX26_00177 0.53 -2.6
191,292 - MPMX26_00177 0.55 -3.2
191,307 - MPMX26_00177 0.58 -3.8
191,354 - MPMX26_00177 0.67 -2.7
191,362 - MPMX26_00177 0.69 -1.3
191,396 - MPMX26_00177 0.75 -0.9
191,396 - MPMX26_00177 0.75 -2.7
191,401 - MPMX26_00177 0.76 -4.0
191,417 - MPMX26_00177 0.79 -2.7
191,419 - MPMX26_00177 0.79 -3.5
191,419 - MPMX26_00177 0.79 -2.4
191,422 - MPMX26_00177 0.80 -3.0
191,505 - -2.0
191,536 - -3.9
191,541 - -1.3
191,553 - -3.4
191,610 - -1.1
191,672 - -0.8
191,680 - +0.4
191,680 - +0.4
191,680 - +0.7
191,680 - -1.6
191,680 - -0.2
191,694 - -0.3
191,797 - -0.4
191,820 - -0.0
191,825 - MPMX26_00178 0.10 -0.1
191,851 - MPMX26_00178 0.14 -0.6
191,852 - MPMX26_00178 0.14 -0.1
191,852 - MPMX26_00178 0.14 -2.0
191,862 + MPMX26_00178 0.15 -0.9
191,883 + MPMX26_00178 0.18 +0.2
191,891 - MPMX26_00178 0.19 +0.3
191,891 - MPMX26_00178 0.19 +0.9
191,891 - MPMX26_00178 0.19 +0.8
191,896 - MPMX26_00178 0.19 +0.2
191,901 - MPMX26_00178 0.20 +1.5
191,901 - MPMX26_00178 0.20 +0.6
191,901 - MPMX26_00178 0.20 +1.6
191,906 - MPMX26_00178 0.20 +0.1
191,909 - MPMX26_00178 0.21 +0.7
191,956 - MPMX26_00178 0.27 +0.1
191,956 - MPMX26_00178 0.27 +0.5
191,956 - MPMX26_00178 0.27 +0.3
191,956 - MPMX26_00178 0.27 +0.4
191,956 - MPMX26_00178 0.27 +0.8
191,956 - MPMX26_00178 0.27 +0.2
191,956 - MPMX26_00178 0.27 +0.1
191,956 - MPMX26_00178 0.27 -0.0
191,956 - MPMX26_00178 0.27 +0.3
191,988 - MPMX26_00178 0.30 -2.3
191,988 - MPMX26_00178 0.30 +1.0
191,993 - MPMX26_00178 0.31 +0.4
191,993 - MPMX26_00178 0.31 -0.3
192,040 + MPMX26_00178 0.37 +0.8
192,040 + MPMX26_00178 0.37 -0.5
192,103 - MPMX26_00178 0.45 +0.2
192,140 - MPMX26_00178 0.49 +0.0
192,140 - MPMX26_00178 0.49 -0.5
192,140 - MPMX26_00178 0.49 -0.3
192,140 - MPMX26_00178 0.49 -0.1
192,140 - MPMX26_00178 0.49 +0.5
192,140 - MPMX26_00178 0.49 -0.1
192,142 - MPMX26_00178 0.50 +0.0
192,178 - MPMX26_00178 0.54 +0.5
192,178 - MPMX26_00178 0.54 -0.7
192,311 - MPMX26_00178 0.70 -0.3
192,311 - MPMX26_00178 0.70 +0.5
192,332 - MPMX26_00178 0.73 +1.5
192,339 + MPMX26_00178 0.74 -1.4
192,342 - MPMX26_00178 0.74 -0.1
192,344 + MPMX26_00178 0.74 +0.2
192,361 - MPMX26_00178 0.77 +0.2
192,397 - MPMX26_00178 0.81 -0.2
192,424 - MPMX26_00178 0.84 +0.3
192,435 - MPMX26_00178 0.86 +0.2
192,442 - MPMX26_00178 0.87 +0.3
192,452 - MPMX26_00178 0.88 -0.3
192,452 - MPMX26_00178 0.88 +0.4
192,457 - MPMX26_00178 0.88 +0.2
192,542 - +0.5
192,586 - -0.4
192,597 - -0.6
192,597 - +0.5
192,742 - MPMX26_00179 0.29 -0.1
192,758 - MPMX26_00179 0.32 +0.3
192,758 - MPMX26_00179 0.32 +0.0
192,758 - MPMX26_00179 0.32 -0.0
192,758 - MPMX26_00179 0.32 -0.4
192,758 - MPMX26_00179 0.32 +0.0
192,771 + MPMX26_00179 0.34 -0.4
192,771 + MPMX26_00179 0.34 +0.0
192,774 - MPMX26_00179 0.34 +0.3
192,774 - MPMX26_00179 0.34 -0.1
192,774 - MPMX26_00179 0.34 +0.1
192,779 - MPMX26_00179 0.35 -0.1
192,779 - MPMX26_00179 0.35 +0.1
192,779 - MPMX26_00179 0.35 -0.4
192,779 - MPMX26_00179 0.35 +0.1
192,784 - MPMX26_00179 0.36 +0.1
192,784 - MPMX26_00179 0.36 +0.7
192,862 - MPMX26_00179 0.49 -0.5
192,863 - MPMX26_00179 0.49 +0.5
192,871 - MPMX26_00179 0.50 -1.0
192,873 - MPMX26_00179 0.50 +1.1
192,873 - MPMX26_00179 0.50 +0.3
192,873 - MPMX26_00179 0.50 +0.8
192,880 - MPMX26_00179 0.52 +0.3
192,902 - MPMX26_00179 0.55 +0.5
192,937 - MPMX26_00179 0.61 +0.2
192,953 - MPMX26_00179 0.63 +0.4
192,953 - MPMX26_00179 0.63 +0.3
192,953 - MPMX26_00179 0.63 +0.2
192,953 - MPMX26_00179 0.63 +0.1
192,953 - MPMX26_00179 0.63 +0.4
192,953 - MPMX26_00179 0.63 -0.5
192,953 - MPMX26_00179 0.63 +0.1
193,010 - MPMX26_00179 0.72 +0.3
193,042 - MPMX26_00179 0.78 -0.2
193,042 - MPMX26_00179 0.78 +0.5
193,045 - MPMX26_00179 0.78 -0.2
193,055 - MPMX26_00179 0.80 +0.3
193,107 - MPMX26_00179 0.88 +0.6
193,107 - MPMX26_00179 0.88 +0.6
193,107 - MPMX26_00179 0.88 +1.5
193,107 - MPMX26_00179 0.88 -0.6
193,163 - +0.2
193,173 - -1.1
193,173 - -0.5
193,183 - +0.1
193,224 + +1.0
193,275 + -0.4
193,275 + +0.3
193,283 - +0.2
193,293 - +0.7
193,308 - +0.1
193,360 + +0.1
193,360 + -0.1
193,373 - +0.8
193,377 + +1.9
193,385 - +0.1
193,413 - -0.7
193,461 + MPMX26_00180 0.11 -0.1
193,464 - MPMX26_00180 0.11 -0.9
193,492 + MPMX26_00180 0.12 -0.9
193,500 - MPMX26_00180 0.13 +0.2
193,500 - MPMX26_00180 0.13 +0.1

Or see this region's nucleotide sequence