Strain Fitness in Escherichia fergusonii Becca around EFB2_04378

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,600,660	+		EFB2_04377	0.52	-0.7
4,600,660	+		EFB2_04377	0.52	-0.1
4,600,660	+		EFB2_04377	0.52	+0.5
4,600,667	-		EFB2_04377	0.52	+0.3
4,600,682	-		EFB2_04377	0.53	-1.8
4,600,717	+		EFB2_04377	0.55	+0.8
4,600,717	+		EFB2_04377	0.55	+2.1
4,600,717	+		EFB2_04377	0.55	-0.0
4,600,769	+		EFB2_04377	0.59	+2.6
4,600,770	-		EFB2_04377	0.59	+1.2
4,600,770	-		EFB2_04377	0.59	-0.6
4,600,770	-		EFB2_04377	0.59	-2.4
4,600,770	-		EFB2_04377	0.59	-2.5
4,600,770	-		EFB2_04377	0.59	-0.5
4,600,781	+		EFB2_04377	0.60	-0.0
4,600,859	+		EFB2_04377	0.65	+0.0
4,600,860	-		EFB2_04377	0.65	-0.9
4,600,873	+		EFB2_04377	0.66	+0.7
4,600,880	+		EFB2_04377	0.67	+0.5
4,600,881	-		EFB2_04377	0.67	+0.2
4,600,881	-		EFB2_04377	0.67	-1.3
4,600,881	-		EFB2_04377	0.67	+0.8
4,600,884	-		EFB2_04377	0.67	+0.1
4,600,892	+		EFB2_04377	0.67	+1.7
4,600,895	+		EFB2_04377	0.68	+0.6
4,600,933	+		EFB2_04377	0.70	+1.3
4,600,934	-		EFB2_04377	0.70	-2.4
4,600,948	+		EFB2_04377	0.71	+1.2
4,600,952	-		EFB2_04377	0.72	+0.2
4,601,020	+		EFB2_04377	0.76	-1.7
4,601,021	-		EFB2_04377	0.76	+0.3
4,601,038	+		EFB2_04377	0.78	-0.6
4,601,038	+		EFB2_04377	0.78	+0.8
4,601,038	+		EFB2_04377	0.78	-1.4
4,601,038	+		EFB2_04377	0.78	+0.1
4,601,038	+		EFB2_04377	0.78	+0.6
4,601,039	-		EFB2_04377	0.78	+0.3
4,601,039	-		EFB2_04377	0.78	+0.5
4,601,039	-		EFB2_04377	0.78	+0.8
4,601,067	+		EFB2_04377	0.79	+2.2
4,601,107	+		EFB2_04377	0.82	+0.3
4,601,107	+		EFB2_04377	0.82	-0.2
4,601,107	+		EFB2_04377	0.82	-0.1
4,601,107	+		EFB2_04377	0.82	+2.4
4,601,108	-		EFB2_04377	0.82	-2.5
4,601,108	-		EFB2_04377	0.82	-0.7
4,601,108	-		EFB2_04377	0.82	-0.4
4,601,108	-		EFB2_04377	0.82	-1.2
4,601,108	-		EFB2_04377	0.82	+1.8
4,601,125	+		EFB2_04377	0.83	-0.8
4,601,125	+		EFB2_04377	0.83	+1.2
4,601,125	+		EFB2_04377	0.83	+0.2
4,601,125	+		EFB2_04377	0.83	-0.0
4,601,125	+		EFB2_04377	0.83	+0.5
4,601,125	+		EFB2_04377	0.83	-0.0
4,601,125	+		EFB2_04377	0.83	+0.6
4,601,126	-		EFB2_04377	0.84	-1.1
4,601,126	-		EFB2_04377	0.84	-2.0
4,601,126	-		EFB2_04377	0.84	-1.3
4,601,126	-		EFB2_04377	0.84	-0.1
4,601,126	-		EFB2_04377	0.84	+0.6
4,601,126	-		EFB2_04377	0.84	+0.5
4,601,126	-		EFB2_04377	0.84	-0.0
4,601,126	-		EFB2_04377	0.84	+0.4
4,601,127	+		EFB2_04377	0.84	-0.3
4,601,127	+		EFB2_04377	0.84	-0.1
4,601,127	+		EFB2_04377	0.84	-0.2
4,601,127	+		EFB2_04377	0.84	-0.1
4,601,127	+		EFB2_04377	0.84	-1.0
4,601,127	+		EFB2_04377	0.84	+1.5
4,601,127	+		EFB2_04377	0.84	+0.8
4,601,127	+		EFB2_04377	0.84	-1.4
4,601,127	+		EFB2_04377	0.84	+0.1
4,601,127	+		EFB2_04377	0.84	+0.4
4,601,127	+		EFB2_04377	0.84	+0.3
4,601,127	+		EFB2_04377	0.84	-2.3
4,601,127	+		EFB2_04377	0.84	-1.5
4,601,127	+		EFB2_04377	0.84	-0.2
4,601,127	+		EFB2_04377	0.84	+0.1
4,601,127	+		EFB2_04377	0.84	+2.3
4,601,127	+		EFB2_04377	0.84	-0.6
4,601,127	+		EFB2_04377	0.84	-0.2
4,601,128	-		EFB2_04377	0.84	+0.1
4,601,128	-		EFB2_04377	0.84	+0.3
4,601,128	-		EFB2_04377	0.84	+0.1
4,601,128	-		EFB2_04377	0.84	-3.5
4,601,128	-		EFB2_04377	0.84	+1.7
4,601,128	-		EFB2_04377	0.84	+0.4
4,601,128	-		EFB2_04377	0.84	+1.1
4,601,128	-		EFB2_04377	0.84	+0.5
4,601,128	-		EFB2_04377	0.84	+0.2
4,601,128	-		EFB2_04377	0.84	-0.4
4,601,128	-		EFB2_04377	0.84	-0.5
4,601,128	-		EFB2_04377	0.84	+0.0
4,601,143	+		EFB2_04377	0.85	-0.4
4,601,144	-		EFB2_04377	0.85	+0.4
4,601,144	-		EFB2_04377	0.85	-1.4
4,601,150	-		EFB2_04377	0.85	-0.4
4,601,150	-		EFB2_04377	0.85	-0.6
4,601,179	+		EFB2_04377	0.87	+0.0
4,601,179	+		EFB2_04377	0.87	+0.6
4,601,180	-		EFB2_04377	0.87	-0.6
4,601,182	+		EFB2_04377	0.87	-0.7
4,601,182	+		EFB2_04377	0.87	+1.3
4,601,182	+		EFB2_04377	0.87	+0.5
4,601,183	-		EFB2_04377	0.87	-2.2
4,601,183	-		EFB2_04377	0.87	-1.2
4,601,183	-		EFB2_04377	0.87	-2.6
4,601,196	+		EFB2_04377	0.88	-0.6
4,601,196	+		EFB2_04377	0.88	+1.0
4,601,196	+		EFB2_04377	0.88	-1.0
4,601,197	-		EFB2_04377	0.88	+1.2
4,601,197	-		EFB2_04377	0.88	-1.1
4,601,197	-		EFB2_04377	0.88	+2.2
4,601,247	-				+0.2
4,601,247	-				+1.2
4,601,260	+				-0.7
4,601,282	+				+0.4
4,601,283	-				+0.8
4,601,283	-				-0.5
4,601,284	+				-0.2
4,601,303	-				-1.9
4,601,303	-				+0.5
4,601,303	-				+0.9
4,601,312	+				+0.6
4,601,312	+				-0.1
4,601,312	+				-0.1
4,601,313	-				-0.4
4,601,313	-				-0.3
4,601,316	+				+0.0
4,601,317	-				-0.9
4,601,349	-				-0.2
4,601,356	+				+0.5
4,601,369	+				-0.5
4,601,369	+				+0.9
4,601,369	+				+1.7
4,601,369	+				+0.6
4,601,370	-				+0.4
4,601,370	-				+0.5
4,601,370	-				+0.8
4,601,370	-				+0.5
4,601,370	-				+0.2
4,601,370	-				-1.2
4,601,370	-				+0.9
4,601,497	-				-2.1
4,601,508	-				+1.9
4,601,508	-				+1.1
4,601,535	+				-2.4
4,601,535	+				+0.4
4,601,536	-				-0.4
4,601,568	+				-0.7
4,601,568	+				+0.5
4,601,568	+				-0.1
4,601,568	+				+0.8
4,601,568	+				+0.8
4,601,568	+				+1.1
4,601,568	+				+1.4
4,601,568	+				+0.4
4,601,568	+				+0.6
4,601,568	+				+0.0
4,601,568	+				+1.0
4,601,568	+				-0.6
4,601,568	+				-1.9
4,601,569	-				+0.5
4,601,569	-				-0.2
4,601,569	-				-1.8
4,601,569	-				+1.0
4,601,569	-				+1.1
4,601,569	-				+1.0
4,601,569	-				+0.5
4,601,569	-				-0.8
4,601,569	-				+0.0
4,601,569	-				+1.1
4,601,569	-				-1.6
4,601,569	-				+0.1
4,601,569	-				+0.0
4,601,569	-				+0.1
4,601,569	-				-0.7
4,601,573	+				+0.2
4,601,574	-				+1.5
4,601,574	-				+0.3
4,601,588	-				-0.2
4,601,608	+				+1.3
4,601,608	+				-2.7
4,601,608	+				-1.6
4,601,608	+				+0.6
4,601,609	-				-1.4
4,601,630	+				-0.6
4,601,630	+				+1.5
4,601,630	+				+0.4
4,601,631	-				-1.4
4,601,631	-				+0.4
4,601,631	-				+0.2
4,601,711	-				-0.7
4,602,610	+				+0.5
4,602,610	+				-1.4
4,602,611	-				+0.5
4,602,611	-				-2.5
4,602,643	+				+0.1
4,602,643	+				-0.5
4,602,644	-				-1.2
4,602,644	-				+1.7
4,602,644	-				+0.6
4,602,672	+				-0.1
4,602,682	+				+0.2
4,602,683	-				+0.9
4,602,728	+				+0.4
4,602,728	+				-2.0
4,602,728	+				-0.7
4,602,731	+				+0.1
4,602,731	+				-0.0
4,602,731	+				+0.3
4,602,735	+				+1.7
4,602,736	-				-2.7
4,602,740	+				+1.0
4,602,740	+				-1.5
4,602,740	+				+1.1
4,602,741	-				-0.6
4,602,741	-				+0.5
4,602,761	+				+0.3
4,602,762	-				-0.5
4,602,762	-				+0.8
4,602,762	-				+2.5
4,602,762	-				-0.5
4,602,808	+				-1.0
4,602,808	+				-1.4
4,602,808	+				+0.5
4,602,809	-				-2.4
4,602,809	-				-0.5
4,602,809	-				-1.0
4,602,809	-				-0.5
4,602,820	+				-0.6
4,602,820	+				+1.2
4,602,820	+				+0.5
4,602,820	+				-0.0
4,602,820	+				-0.1
4,602,820	+				-1.1
4,602,820	+				-0.3
4,602,820	+				-1.9
4,602,821	-				-1.9
4,602,821	-				-1.2
4,602,821	-				+0.1
4,602,821	-				-1.6
4,602,821	-				+2.3
4,602,821	-				-1.6
4,602,821	-				-0.1
4,602,821	-				-0.4
4,602,821	-				-0.9
4,602,821	-				-0.2
4,602,822	+				-0.0
4,602,822	+				+0.0
4,602,822	+				-0.1
4,602,822	+				+0.8
4,602,822	+				-0.2
4,602,822	+				-0.7
4,602,822	+				-0.4
4,602,822	+				-0.9
4,602,822	+				+0.1
4,602,822	+				-1.9
4,602,822	+				+1.9
4,602,822	+				+1.3
4,602,822	+				+1.8
4,602,822	+				+1.4
4,602,823	-				-1.3
4,602,823	-				+0.0
4,602,823	-				-1.0
4,602,823	-				-0.3
4,602,823	-				+0.9
4,602,823	-				-1.0
4,602,823	-				+0.4
4,602,823	-				-2.5
4,602,823	-				-1.9
4,602,823	-				-2.4
4,602,830	+				+0.2
4,602,830	+				-0.1
4,602,830	+				+0.5
4,602,830	+				+0.5
4,602,830	+				-0.3
4,602,830	+				+0.1
4,602,830	+				+0.0
4,602,831	-				-2.8
4,602,831	-				+2.7
4,602,831	-				-2.3
4,602,831	-				-2.3
4,602,831	-				+0.5
4,602,831	-				-1.6
4,602,831	-				-0.1
4,602,831	-				-1.5
4,602,834	+				+1.2
4,602,834	+				+0.5
4,602,834	+				-1.6
4,602,834	+				+0.1
4,602,834	+				-0.5
4,602,834	+				-0.0
4,602,834	+				+1.5
4,602,834	+				-0.7
4,602,834	+				+1.1
4,602,834	+				+0.9
4,602,834	+				+0.4
4,602,834	+				+1.2
4,602,834	+				+0.8
4,602,834	+				+0.3
4,602,834	+				-2.3
4,602,834	+				-0.7
4,602,834	+				+1.7
4,602,834	+				-0.8
4,602,834	+				-4.2
4,602,834	+				+1.5
4,602,835	-				-2.9
4,602,835	-				+1.3
4,602,835	-				+0.2
4,602,835	-				-0.5
4,602,835	-				-2.5
4,602,835	-				-1.0
4,602,835	-				-0.9
4,602,835	-				-0.2
4,602,835	-				+1.1
4,602,836	+				-0.1
4,602,836	+				+0.1
4,602,836	+				-0.8
4,602,837	-				-1.2
4,602,837	-				-0.7
4,602,837	-				-2.9
4,602,837	-				-0.1
4,602,837	-				-1.5
4,602,868	+				+0.3
4,602,869	-				-0.4
4,602,869	-				+0.8
4,602,869	-				-1.4
4,602,879	+				+0.2
4,602,879	+				+0.2
4,602,879	+				+0.3
4,602,879	+				-0.7
4,602,879	+				-3.9
4,602,879	+				+0.3
4,602,880	-				-3.2
4,602,880	-				-0.0
4,602,880	-				-1.8
4,602,883	+				-1.3
4,602,883	+				-3.4
4,602,883	+				-2.8
4,602,883	+				-1.8
4,602,884	-				+0.7
4,602,884	-				-1.1
4,602,884	-				-1.6
4,602,884	-				+0.3
4,602,893	+				-0.1
4,602,894	-				-1.2
4,602,894	-				-2.7
4,602,962	+				-1.8
4,602,963	-				-0.3
4,602,963	-				-2.2
4,602,963	-				-0.1
4,602,983	+				+0.9
4,602,983	+				-0.5
4,602,983	+				+0.8
4,602,983	+				+1.0
4,602,983	+				-0.4
4,602,984	-				-0.0
4,602,984	-				+0.7
4,602,984	-				-2.3
4,603,034	+				-0.3
4,603,034	+				-0.5
4,603,035	-				+0.7
4,603,035	-				+1.4
4,603,035	-				-1.4
4,603,046	+				-2.9
4,603,046	+				+0.4
4,603,046	+				-3.9
4,603,046	+				-1.4
4,603,046	+				-0.7
4,603,047	-				-1.1
4,603,047	-				-0.2
4,603,047	-				-1.1
4,603,047	-				-0.9
4,603,047	-				+0.9
4,603,047	-				-2.8
4,603,047	-				+0.1
4,603,047	-				+0.2
4,603,049	-				-1.0
4,603,065	+				+0.5
4,603,137	+		EFB2_04379	0.11	-1.1
4,603,137	+		EFB2_04379	0.11	-2.5
4,603,137	+		EFB2_04379	0.11	-1.1
4,603,137	+		EFB2_04379	0.11	-1.8
4,603,138	-		EFB2_04379	0.11	-1.9
4,603,138	-		EFB2_04379	0.11	+1.1
4,603,138	-		EFB2_04379	0.11	-0.2
4,603,138	-		EFB2_04379	0.11	+0.9
4,603,143	-		EFB2_04379	0.12	+0.7
4,603,143	-		EFB2_04379	0.12	-0.6
4,603,143	-		EFB2_04379	0.12	-3.5
4,603,143	-		EFB2_04379	0.12	+0.4
4,603,183	+		EFB2_04379	0.14	-0.5
4,603,183	+		EFB2_04379	0.14	-0.4
4,603,183	+		EFB2_04379	0.14	-1.7
4,603,184	-		EFB2_04379	0.14	+0.5
4,603,184	-		EFB2_04379	0.14	-1.4
4,603,260	+		EFB2_04379	0.18	-1.1
4,603,260	+		EFB2_04379	0.18	-1.1
4,603,260	+		EFB2_04379	0.18	+0.9
4,603,271	+		EFB2_04379	0.19	+2.2
4,603,271	+		EFB2_04379	0.19	-0.6
4,603,271	+		EFB2_04379	0.19	-1.4
4,603,271	+		EFB2_04379	0.19	-0.1
4,603,271	+		EFB2_04379	0.19	+1.4
4,603,271	+		EFB2_04379	0.19	-1.5
4,603,271	+		EFB2_04379	0.19	-1.3
4,603,271	+		EFB2_04379	0.19	-2.2
4,603,271	+		EFB2_04379	0.19	-0.1
4,603,271	+		EFB2_04379	0.19	+0.6
4,603,271	+		EFB2_04379	0.19	+0.4
4,603,271	+		EFB2_04379	0.19	-0.6
4,603,271	+		EFB2_04379	0.19	-0.2
4,603,271	+		EFB2_04379	0.19	-1.1
4,603,271	+		EFB2_04379	0.19	+0.5
4,603,271	+		EFB2_04379	0.19	-0.5
4,603,272	-		EFB2_04379	0.19	-2.5
4,603,272	-		EFB2_04379	0.19	-2.2
4,603,272	-		EFB2_04379	0.19	-3.0
4,603,272	-		EFB2_04379	0.19	-1.4
4,603,272	-		EFB2_04379	0.19	+0.5
4,603,272	-		EFB2_04379	0.19	-4.0
4,603,272	-		EFB2_04379	0.19	+0.8
4,603,272	-		EFB2_04379	0.19	-0.9
4,603,272	-		EFB2_04379	0.19	-0.5
4,603,272	-		EFB2_04379	0.19	-0.8
4,603,272	-		EFB2_04379	0.19	+0.0
4,603,321	-		EFB2_04379	0.22	-0.1
4,603,335	+		EFB2_04379	0.22	-1.0
4,603,335	+		EFB2_04379	0.22	+0.4
4,603,335	+		EFB2_04379	0.22	+0.6
4,603,335	+		EFB2_04379	0.22	+1.1
4,603,335	+		EFB2_04379	0.22	-1.3
4,603,336	-		EFB2_04379	0.22	+0.5
4,603,336	-		EFB2_04379	0.22	-2.9
4,603,336	-		EFB2_04379	0.22	+0.8
4,603,336	-		EFB2_04379	0.22	+0.7
4,603,410	+		EFB2_04379	0.26	-1.0
4,603,411	-		EFB2_04379	0.27	+1.4
4,603,445	+		EFB2_04379	0.28	-1.1
4,603,446	-		EFB2_04379	0.28	-2.5
4,603,446	-		EFB2_04379	0.28	-0.9
4,603,446	-		EFB2_04379	0.28	-1.3
4,603,446	-		EFB2_04379	0.28	+0.1
4,603,488	+		EFB2_04379	0.31	+0.3
4,603,528	+		EFB2_04379	0.33	-0.4
4,603,534	+		EFB2_04379	0.33	+0.2
4,603,534	+		EFB2_04379	0.33	-1.0
4,603,534	+		EFB2_04379	0.33	+0.2
4,603,534	+		EFB2_04379	0.33	-0.4
4,603,535	-		EFB2_04379	0.33	-1.2
4,603,535	-		EFB2_04379	0.33	-1.3
4,603,570	-		EFB2_04379	0.35	-0.7
4,603,570	-		EFB2_04379	0.35	-1.9
4,603,576	-		EFB2_04379	0.36	-1.6
4,603,583	+		EFB2_04379	0.36	-2.0