Strain Fitness in Escherichia fergusonii Becca around EFB2_03775

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,957,241	+		EFB2_03773	0.26	-2.1
3,957,241	+		EFB2_03773	0.26	+0.5
3,957,241	+		EFB2_03773	0.26	-0.2
3,957,241	+		EFB2_03773	0.26	-0.9
3,957,241	+		EFB2_03773	0.26	-3.3
3,957,241	+		EFB2_03773	0.26	+1.7
3,957,241	+		EFB2_03773	0.26	+0.1
3,957,241	+		EFB2_03773	0.26	-0.4
3,957,241	+		EFB2_03773	0.26	-2.7
3,957,241	+		EFB2_03773	0.26	-0.1
3,957,241	+		EFB2_03773	0.26	-0.3
3,957,241	+		EFB2_03773	0.26	+0.5
3,957,241	+		EFB2_03773	0.26	+1.1
3,957,241	+		EFB2_03773	0.26	+1.4
3,957,241	+		EFB2_03773	0.26	+2.7
3,957,241	+		EFB2_03773	0.26	-0.1
3,957,241	+		EFB2_03773	0.26	-2.5
3,957,241	+		EFB2_03773	0.26	-0.1
3,957,241	+		EFB2_03773	0.26	+0.6
3,957,241	+		EFB2_03773	0.26	-1.9
3,957,241	+		EFB2_03773	0.26	+1.9
3,957,241	+		EFB2_03773	0.26	+0.0
3,957,241	+		EFB2_03773	0.26	-1.8
3,957,241	+		EFB2_03773	0.26	+0.2
3,957,241	+		EFB2_03773	0.26	+0.4
3,957,241	+		EFB2_03773	0.26	-0.1
3,957,241	+		EFB2_03773	0.26	+1.8
3,957,241	+		EFB2_03773	0.26	-0.0
3,957,241	+		EFB2_03773	0.26	+0.4
3,957,241	+		EFB2_03773	0.26	-0.7
3,957,241	+		EFB2_03773	0.26	-2.6
3,957,241	+		EFB2_03773	0.26	+0.0
3,957,241	+		EFB2_03773	0.26	+0.5
3,957,241	+		EFB2_03773	0.26	-0.2
3,957,241	+		EFB2_03773	0.26	-0.7
3,957,241	+		EFB2_03773	0.26	-1.0
3,957,242	-		EFB2_03773	0.26	-0.8
3,957,294	+		EFB2_03773	0.36	-0.4
3,957,297	+		EFB2_03773	0.36	+0.9
3,957,297	+		EFB2_03773	0.36	-1.7
3,957,297	+		EFB2_03773	0.36	+1.0
3,957,297	+		EFB2_03773	0.36	-0.2
3,957,297	+		EFB2_03773	0.36	+2.2
3,957,297	+		EFB2_03773	0.36	-0.6
3,957,297	+		EFB2_03773	0.36	+0.5
3,957,297	+		EFB2_03773	0.36	+0.1
3,957,298	-		EFB2_03773	0.36	-1.1
3,957,308	+		EFB2_03773	0.38	+0.9
3,957,308	+		EFB2_03773	0.38	+2.3
3,957,329	+		EFB2_03773	0.42	+1.3
3,957,329	+		EFB2_03773	0.42	-0.0
3,957,329	+		EFB2_03773	0.42	-0.8
3,957,372	+		EFB2_03773	0.50	-1.0
3,957,372	+		EFB2_03773	0.50	-0.9
3,957,372	+		EFB2_03773	0.50	-0.1
3,957,372	+		EFB2_03773	0.50	+0.2
3,957,402	+		EFB2_03773	0.55	+0.7
3,957,402	+		EFB2_03773	0.55	+1.2
3,957,402	+		EFB2_03773	0.55	+0.6
3,957,402	+		EFB2_03773	0.55	-0.5
3,957,402	+		EFB2_03773	0.55	+0.8
3,957,402	+		EFB2_03773	0.55	-1.1
3,957,402	+		EFB2_03773	0.55	+0.1
3,957,402	+		EFB2_03773	0.55	-0.6
3,957,402	+		EFB2_03773	0.55	-0.0
3,957,402	+		EFB2_03773	0.55	+0.1
3,957,402	+		EFB2_03773	0.55	-0.7
3,957,486	+		EFB2_03773	0.70	+1.1
3,957,486	+		EFB2_03773	0.70	-0.3
3,957,486	+		EFB2_03773	0.70	-2.7
3,957,486	+		EFB2_03773	0.70	-0.8
3,957,501	+		EFB2_03773	0.73	-0.8
3,957,501	+		EFB2_03773	0.73	-1.5
3,957,624	+				-3.9
3,957,624	+				-1.4
3,957,624	+				-0.4
3,957,624	+				-1.7
3,957,624	+				-0.9
3,957,647	-				+0.9
3,957,659	+				-0.1
3,957,660	-				+0.2
3,957,660	-				-1.0
3,957,660	-				+0.3
3,957,750	+				+0.3
3,957,750	+				-0.4
3,957,750	+				-3.1
3,957,764	-				-2.1
3,957,764	-				+0.8
3,957,764	-				-0.9
3,957,772	+				-0.5
3,957,785	-				+0.6
3,957,869	+				-0.8
3,957,972	+				-1.9
3,957,988	+				-0.7
3,957,988	+				+0.2
3,957,988	+				+0.3
3,957,988	+				-0.4
3,957,988	+				-0.3
3,957,988	+				-0.1
3,957,989	-				-0.1
3,957,989	-				+0.4
3,957,989	-				+1.6
3,957,996	+				-0.9
3,957,996	+				+0.3
3,957,996	+				+0.2
3,957,996	+				+0.3
3,957,996	+				-0.2
3,957,997	-				+0.3
3,957,997	-				-1.0
3,958,018	+		EFB2_03774	0.18	+0.0
3,958,018	+		EFB2_03774	0.18	-1.8
3,958,019	-		EFB2_03774	0.19	+1.2
3,958,019	-		EFB2_03774	0.19	-1.5
3,958,019	-		EFB2_03774	0.19	-0.1
3,958,019	-		EFB2_03774	0.19	+1.3
3,958,029	-		EFB2_03774	0.25	-1.1
3,958,041	+		EFB2_03774	0.33	+1.0
3,958,041	+		EFB2_03774	0.33	+1.0
3,958,041	+		EFB2_03774	0.33	+0.2
3,958,041	+		EFB2_03774	0.33	+0.6
3,958,041	+		EFB2_03774	0.33	-0.4
3,958,041	+		EFB2_03774	0.33	-3.0
3,958,041	+		EFB2_03774	0.33	-1.8
3,958,041	+		EFB2_03774	0.33	-0.4
3,958,041	+		EFB2_03774	0.33	+2.6
3,958,042	-		EFB2_03774	0.33	-2.1
3,958,042	-		EFB2_03774	0.33	-1.4
3,958,042	-		EFB2_03774	0.33	-2.0
3,958,042	-		EFB2_03774	0.33	-0.6
3,958,042	-		EFB2_03774	0.33	+0.2
3,958,042	-		EFB2_03774	0.33	-2.2
3,958,042	-		EFB2_03774	0.33	-0.3
3,958,042	-		EFB2_03774	0.33	-0.6
3,958,042	-		EFB2_03774	0.33	+2.3
3,958,054	+		EFB2_03774	0.41	-1.5
3,958,054	+		EFB2_03774	0.41	-0.1
3,958,054	+		EFB2_03774	0.41	+0.0
3,958,054	+		EFB2_03774	0.41	+0.7
3,958,055	-		EFB2_03774	0.42	+0.3
3,958,057	+		EFB2_03774	0.43	-1.8
3,958,057	+		EFB2_03774	0.43	-0.0
3,958,057	+		EFB2_03774	0.43	+1.8
3,958,057	+		EFB2_03774	0.43	+0.2
3,958,057	+		EFB2_03774	0.43	+0.6
3,958,057	+		EFB2_03774	0.43	+0.0
3,958,057	+		EFB2_03774	0.43	-1.5
3,958,057	+		EFB2_03774	0.43	-2.1
3,958,057	+		EFB2_03774	0.43	+0.4
3,958,057	+		EFB2_03774	0.43	-0.0
3,958,057	+		EFB2_03774	0.43	+1.0
3,958,057	+		EFB2_03774	0.43	-1.5
3,958,057	+		EFB2_03774	0.43	-0.2
3,958,057	+		EFB2_03774	0.43	+0.2
3,958,057	+		EFB2_03774	0.43	+1.0
3,958,057	+		EFB2_03774	0.43	-2.5
3,958,058	-		EFB2_03774	0.43	-1.1
3,958,058	-		EFB2_03774	0.43	+0.8
3,958,058	-		EFB2_03774	0.43	-1.9
3,958,058	-		EFB2_03774	0.43	+2.0
3,958,058	-		EFB2_03774	0.43	+0.4
3,958,058	-		EFB2_03774	0.43	-2.1
3,958,058	-		EFB2_03774	0.43	-0.2
3,958,058	-		EFB2_03774	0.43	-3.2
3,958,058	-		EFB2_03774	0.43	-0.2
3,958,058	-		EFB2_03774	0.43	-1.0
3,958,058	-		EFB2_03774	0.43	+0.3
3,958,058	-		EFB2_03774	0.43	-1.2
3,958,058	-		EFB2_03774	0.43	+0.2
3,958,058	-		EFB2_03774	0.43	+0.1
3,958,058	-		EFB2_03774	0.43	+0.2
3,958,061	+		EFB2_03774	0.45	+1.2
3,958,108	+		EFB2_03774	0.75	-1.8
3,958,108	+		EFB2_03774	0.75	+1.2
3,958,108	+		EFB2_03774	0.75	-0.4
3,958,108	+		EFB2_03774	0.75	+1.6
3,958,109	-		EFB2_03774	0.75	-0.1
3,958,109	-		EFB2_03774	0.75	-1.7
3,958,109	-		EFB2_03774	0.75	+0.4
3,958,109	-		EFB2_03774	0.75	+0.2
3,958,109	-		EFB2_03774	0.75	+1.2
3,958,131	+		EFB2_03774	0.89	+1.4
3,958,132	-				-2.2
3,958,132	-				-0.3
3,958,132	-				-1.0
3,958,132	-				-1.4
3,958,132	-				-1.1
3,958,135	+				+0.2
3,958,135	+				+0.4
3,958,136	-				+0.1
3,958,136	-				+1.0
3,958,136	-				+0.1
3,958,149	-				-1.4
3,958,149	-				-0.2
3,958,149	-				-0.3
3,958,149	-				-2.2
3,958,158	-				-0.7
3,958,168	+				+3.7
3,958,168	+				+1.3
3,958,168	+				+0.3
3,958,168	+				-0.6
3,958,168	+				-0.1
3,958,168	+				-1.2
3,958,169	-				-1.4
3,958,169	-				+0.5
3,958,169	-				-0.7
3,958,169	-				+0.3
3,958,169	-				-2.7
3,958,169	-				-0.3
3,958,169	-				+0.9
3,958,197	-				-0.3
3,958,197	-				-0.4
3,958,204	+				+1.0
3,958,222	+				-2.4
3,958,222	+				-1.7
3,958,222	+				+0.2
3,958,223	-				-0.3
3,958,241	-		EFB2_03775	0.18	+1.2
3,958,274	-		EFB2_03775	0.39	+0.6
3,958,274	-		EFB2_03775	0.39	-1.3
3,958,280	+		EFB2_03775	0.43	-0.5
3,958,280	+		EFB2_03775	0.43	+1.7
3,958,281	-		EFB2_03775	0.44	-2.6
3,958,303	+		EFB2_03775	0.58	-1.6
3,958,304	-		EFB2_03775	0.59	+1.3
3,958,315	+		EFB2_03775	0.66	+0.6
3,958,315	+		EFB2_03775	0.66	-2.2
3,958,315	+		EFB2_03775	0.66	+0.9
3,958,316	-		EFB2_03775	0.67	-1.5
3,958,316	-		EFB2_03775	0.67	+0.7
3,958,336	+		EFB2_03775	0.80	+1.5
3,958,337	-		EFB2_03775	0.80	+0.9
3,958,339	+		EFB2_03775	0.82	-1.2
3,958,339	+		EFB2_03775	0.82	-1.3
3,958,340	-		EFB2_03775	0.82	+0.3
3,958,348	+		EFB2_03775	0.88	+2.2
3,958,348	+		EFB2_03775	0.88	+0.7
3,958,348	+		EFB2_03775	0.88	-0.6
3,958,402	+				+0.7
3,958,402	+				+0.7
3,958,403	-				+0.1
3,958,423	-				-1.8
3,958,423	-				-0.1
3,958,438	+				-2.8
3,958,438	+				-0.4
3,958,438	+				-1.7
3,958,439	-				-1.3
3,958,439	-				+0.9
3,958,444	+				-1.6
3,958,444	+				+0.5
3,958,444	+				-0.1
3,958,444	+				-0.2
3,958,445	-				-0.6
3,958,445	-				+0.6
3,958,445	-				+0.4
3,958,445	-				+1.1
3,958,445	-				-1.3
3,958,451	-				+1.1
3,958,465	+				-0.7
3,958,466	+				+1.7
3,958,466	+				+0.9
3,958,467	-				+1.0
3,958,467	-				-0.8
3,958,475	+				+0.3
3,958,475	+				-2.6
3,958,493	+				-0.4
3,958,493	+				+2.5
3,958,493	+				-0.5
3,958,494	-				-1.1
3,958,494	-				-2.6
3,958,494	-				-0.6
3,958,494	-				-0.7
3,958,495	+				+1.7
3,958,496	-				+1.2
3,958,496	-				+0.3
3,958,496	-				+0.3
3,958,496	-				-0.5
3,958,496	-				-0.2
3,958,505	+				-2.7
3,958,514	+				+1.6
3,958,521	-				-1.2
3,958,527	+				-0.1
3,958,527	+				+0.3
3,958,551	+				-2.8
3,958,551	+				-2.2
3,958,551	+				+0.8
3,958,551	+				+1.1
3,958,552	-				+0.5
3,958,552	-				+2.2
3,958,561	+				-1.1
3,958,562	-				-2.0
3,958,562	-				+0.2
3,958,562	-				+0.2
3,958,562	-				+2.0
3,958,576	+				+0.2
3,958,592	+				+1.1
3,958,592	+				+0.4
3,958,593	-				+0.0
3,958,593	-				-2.2
3,958,593	-				+1.2
3,958,593	-				-0.3
3,958,593	-				+1.3
3,958,593	-				-1.0
3,958,593	-				-2.9
3,958,615	+				-0.3
3,958,615	+				-0.2
3,958,615	+				+0.6
3,958,616	-				+1.1
3,958,616	-				-1.0
3,958,616	-				+1.4
3,958,642	+				+0.2
3,958,642	+				+1.9
3,958,642	+				+0.9
3,958,643	-				+1.9
3,958,643	-				-0.8
3,958,643	-				+0.9
3,958,665	-				+1.0
3,958,672	+				+0.3
3,958,672	+				+0.6
3,958,672	+				-1.5
3,958,672	+				-0.8
3,958,672	+				-1.6
3,958,672	+				-1.8
3,958,672	+				-1.6
3,958,673	-				-1.1
3,958,673	-				+0.8
3,958,673	-				-0.9
3,958,673	-				+0.8
3,958,680	+				-1.4
3,958,680	+				+0.5
3,958,680	+				+1.2
3,958,681	-				+0.9
3,958,681	-				-2.7
3,958,681	-				+0.8
3,958,681	-				+2.2
3,958,681	-				-3.0
3,958,681	-				+2.4
3,958,681	-				+2.0
3,958,699	+				-2.7
3,958,699	+				-0.0
3,958,699	+				-1.2
3,958,699	+				-1.2
3,958,700	-				+0.1
3,958,700	-				-0.2
3,958,708	+				+0.3
3,958,708	+				-1.3
3,958,734	+				+0.5
3,958,734	+				-0.9
3,958,734	+				+0.4
3,958,734	+				-1.3
3,958,734	+				-0.2
3,958,734	+				+0.3
3,958,735	-				+0.2
3,958,735	-				+0.7
3,958,735	-				+0.7
3,958,735	-				-0.2
3,958,735	-				-1.4
3,958,735	-				+0.9
3,958,735	-				+0.4
3,958,774	+				+0.0
3,958,774	+				-0.0
3,958,774	+				-2.1
3,958,775	-				-1.1
3,958,775	-				-0.7
3,958,775	-				-1.5
3,958,786	+				+0.1
3,958,786	+				-1.1
3,958,786	+				+0.9
3,958,786	+				-0.1
3,958,786	+				+3.2
3,958,787	-				+0.0
3,958,795	+				-0.4
3,958,835	+				-0.3
3,958,835	+				+1.2
3,958,835	+				+0.9
3,958,856	+				+0.6
3,958,856	+				+0.2
3,958,856	+				+0.2
3,958,857	-				+1.5
3,958,857	-				+0.6
3,958,866	+				+1.0
3,958,866	+				-1.1
3,958,867	-				-0.7
3,958,867	-				+2.2
3,958,873	+				+0.0
3,958,873	+				-0.8
3,958,873	+				-1.3
3,958,874	-				+0.6
3,958,874	-				+0.6
3,958,874	-				+1.0
3,958,874	-				-2.3
3,958,874	-				-0.9
3,958,874	-				+0.6
3,958,874	-				-0.4
3,958,874	-				+1.7
3,958,878	+				-4.2
3,958,878	+				+0.4
3,958,879	-				+0.8
3,958,879	-				+1.2
3,958,890	+				+0.0
3,958,898	+				-0.4
3,958,898	+				-1.7
3,958,898	+				-1.1
3,958,898	+				+1.4
3,958,898	+				+0.2
3,958,898	+				-0.8
3,958,898	+				+1.2
3,958,898	+				-0.3
3,958,898	+				+0.3
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