Strain Fitness in Escherichia fergusonii Becca around EFB2_03135

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,277,467	+				-1.6
3,277,467	+				-2.2
3,277,467	+				-1.4
3,277,468	-				+0.8
3,277,472	+				-0.3
3,277,472	+				-1.4
3,277,473	-				-1.0
3,277,473	-				+0.7
3,277,527	+				+1.7
3,277,527	+				+0.7
3,277,528	-				-0.5
3,277,528	-				-0.2
3,277,528	-				+1.1
3,277,528	-				+0.4
3,277,528	-				+1.6
3,277,528	-				-1.9
3,277,548	+				+0.1
3,277,549	-				-1.0
3,277,549	-				-2.8
3,277,549	-				+0.9
3,277,563	+				-1.7
3,277,563	+				+0.2
3,277,570	+				-0.8
3,277,571	-				+1.1
3,277,571	-				-0.2
3,277,574	-				-0.6
3,277,574	-				-0.1
3,277,574	-				-2.3
3,277,587	+				-0.0
3,277,588	-				-0.4
3,277,588	-				-1.0
3,277,588	-				+1.7
3,277,634	+				+1.0
3,277,634	+				-2.0
3,277,634	+				-1.4
3,277,642	-				-1.0
3,277,787	+				-0.9
3,277,791	+				+1.5
3,277,805	+				-2.0
3,277,806	-				-0.2
3,277,806	-				+0.1
3,277,813	+				+0.3
3,277,814	-				-0.6
3,277,837	+				-3.0
3,277,918	+				-0.5
3,277,919	-				-2.8
3,277,919	-				-0.3
3,277,919	-				-0.1
3,277,919	-				+0.6
3,277,949	+				-0.5
3,277,949	+				+0.8
3,277,949	+				-2.4
3,277,949	+				-1.2
3,277,949	+				+0.8
3,277,949	+				-0.0
3,277,949	+				-1.5
3,277,950	-				+1.0
3,277,950	-				-2.1
3,277,972	+				-0.1
3,277,972	+				-0.0
3,277,973	-				+0.5
3,277,973	-				-1.3
3,278,001	+				+0.5
3,278,002	-				+0.5
3,278,045	+				-0.1
3,278,045	+				+0.7
3,278,045	+				+1.6
3,278,045	+				+1.0
3,278,046	-				-2.7
3,278,046	-				-1.3
3,278,046	-				-0.6
3,278,049	+				-0.0
3,278,049	+				-1.4
3,278,049	+				-2.0
3,278,049	+				+1.1
3,278,049	+				-1.9
3,278,050	-				+1.5
3,278,050	-				-2.3
3,278,050	-				+3.0
3,278,050	-				-0.4
3,278,065	+				+1.6
3,278,094	+				-1.7
3,278,094	+				+1.0
3,278,094	+				+1.4
3,278,094	+				+1.0
3,278,094	+				+0.8
3,278,095	-				+1.0
3,278,095	-				+0.0
3,278,095	-				+1.9
3,278,097	+				-0.3
3,278,097	+				-1.5
3,278,097	+				-0.4
3,278,097	+				+0.9
3,278,097	+				-1.8
3,278,097	+				-0.2
3,278,097	+				-0.3
3,278,098	-				+0.7
3,278,098	-				-0.2
3,278,104	+				-1.5
3,278,126	+				-1.3
3,278,126	+				-1.2
3,278,126	+				-0.5
3,278,127	-				+0.1
3,278,127	-				-0.8
3,278,127	-				+1.5
3,278,128	+				-0.5
3,278,148	+				+1.3
3,278,148	+				-0.3
3,278,148	+				+0.1
3,278,148	+				-1.7
3,278,148	+				-0.4
3,278,148	+				-3.1
3,278,148	+				-2.0
3,278,148	+				+0.8
3,278,148	+				-0.8
3,278,148	+				-0.8
3,278,149	-				-0.5
3,278,149	-				+1.5
3,278,149	-				-1.8
3,278,157	-				+1.0
3,278,161	+		EFB2_03135	0.10	+2.3
3,278,162	-		EFB2_03135	0.10	+1.6
3,278,180	+		EFB2_03135	0.12	+0.2
3,278,180	+		EFB2_03135	0.12	+0.7
3,278,210	+		EFB2_03135	0.15	-2.4
3,278,210	+		EFB2_03135	0.15	-2.3
3,278,234	+		EFB2_03135	0.17	-1.8
3,278,234	+		EFB2_03135	0.17	-1.8
3,278,234	+		EFB2_03135	0.17	-0.2
3,278,234	+		EFB2_03135	0.17	+0.0
3,278,234	+		EFB2_03135	0.17	+1.1
3,278,234	+		EFB2_03135	0.17	-0.3
3,278,234	+		EFB2_03135	0.17	+1.4
3,278,234	+		EFB2_03135	0.17	+2.0
3,278,234	+		EFB2_03135	0.17	+0.1
3,278,234	+		EFB2_03135	0.17	+0.7
3,278,234	+		EFB2_03135	0.17	-0.1
3,278,234	+		EFB2_03135	0.17	-0.2
3,278,234	+		EFB2_03135	0.17	+0.6
3,278,234	+		EFB2_03135	0.17	-2.5
3,278,234	+		EFB2_03135	0.17	+0.0
3,278,235	-		EFB2_03135	0.17	+0.8
3,278,235	-		EFB2_03135	0.17	+0.1
3,278,235	-		EFB2_03135	0.17	+0.8
3,278,235	-		EFB2_03135	0.17	-0.1
3,278,235	-		EFB2_03135	0.17	+2.6
3,278,235	-		EFB2_03135	0.17	-2.4
3,278,235	-		EFB2_03135	0.17	-1.7
3,278,235	-		EFB2_03135	0.17	+1.7
3,278,235	-		EFB2_03135	0.17	-1.4
3,278,235	-		EFB2_03135	0.17	-0.7
3,278,235	-		EFB2_03135	0.17	+0.4
3,278,235	-		EFB2_03135	0.17	-0.2
3,278,235	-		EFB2_03135	0.17	+1.8
3,278,235	-		EFB2_03135	0.17	+0.7
3,278,235	-		EFB2_03135	0.17	-0.3
3,278,303	+		EFB2_03135	0.23	+1.5
3,278,303	+		EFB2_03135	0.23	-3.9
3,278,303	+		EFB2_03135	0.23	-0.6
3,278,304	-		EFB2_03135	0.23	-2.4
3,278,304	-		EFB2_03135	0.23	+0.8
3,278,304	-		EFB2_03135	0.23	-0.1
3,278,304	-		EFB2_03135	0.23	-0.8
3,278,304	-		EFB2_03135	0.23	-0.0
3,278,304	-		EFB2_03135	0.23	-2.9
3,278,305	+		EFB2_03135	0.23	-2.8
3,278,305	+		EFB2_03135	0.23	-0.0
3,278,305	+		EFB2_03135	0.23	-0.8
3,278,305	+		EFB2_03135	0.23	+0.0
3,278,305	+		EFB2_03135	0.23	-0.9
3,278,305	+		EFB2_03135	0.23	+0.9
3,278,305	+		EFB2_03135	0.23	+0.5
3,278,306	-		EFB2_03135	0.23	+1.6
3,278,306	-		EFB2_03135	0.23	-1.0
3,278,306	-		EFB2_03135	0.23	+2.1
3,278,306	-		EFB2_03135	0.23	-2.4
3,278,306	-		EFB2_03135	0.23	-2.9
3,278,317	+		EFB2_03135	0.24	+0.3
3,278,380	+		EFB2_03135	0.30	-0.3
3,278,380	+		EFB2_03135	0.30	+0.5
3,278,380	+		EFB2_03135	0.30	+0.5
3,278,380	+		EFB2_03135	0.30	-0.4
3,278,380	+		EFB2_03135	0.30	-0.2
3,278,381	-		EFB2_03135	0.30	+1.2
3,278,381	-		EFB2_03135	0.30	-0.3
3,278,381	-		EFB2_03135	0.30	-3.7
3,278,381	-		EFB2_03135	0.30	+1.3
3,278,384	+		EFB2_03135	0.31	-1.3
3,278,385	-		EFB2_03135	0.31	+1.0
3,278,385	-		EFB2_03135	0.31	+2.3
3,278,385	-		EFB2_03135	0.31	-0.2
3,278,408	+		EFB2_03135	0.33	+0.9
3,278,416	+		EFB2_03135	0.34	-0.7
3,278,417	-		EFB2_03135	0.34	+0.1
3,278,417	-		EFB2_03135	0.34	+1.0
3,278,420	+		EFB2_03135	0.34	-1.5
3,278,420	+		EFB2_03135	0.34	-3.5
3,278,420	+		EFB2_03135	0.34	+0.1
3,278,420	+		EFB2_03135	0.34	+0.6
3,278,420	+		EFB2_03135	0.34	+1.0
3,278,420	+		EFB2_03135	0.34	-0.9
3,278,420	+		EFB2_03135	0.34	+3.0
3,278,420	+		EFB2_03135	0.34	+1.2
3,278,420	+		EFB2_03135	0.34	-0.4
3,278,420	+		EFB2_03135	0.34	+0.3
3,278,420	+		EFB2_03135	0.34	-1.1
3,278,420	+		EFB2_03135	0.34	-0.3
3,278,420	+		EFB2_03135	0.34	+0.3
3,278,420	+		EFB2_03135	0.34	-1.0
3,278,420	+		EFB2_03135	0.34	+0.1
3,278,420	+		EFB2_03135	0.34	-0.3
3,278,420	+		EFB2_03135	0.34	-0.9
3,278,421	-		EFB2_03135	0.34	-1.9
3,278,421	-		EFB2_03135	0.34	-0.8
3,278,421	-		EFB2_03135	0.34	+0.7
3,278,421	-		EFB2_03135	0.34	+0.6
3,278,421	-		EFB2_03135	0.34	-0.0
3,278,421	-		EFB2_03135	0.34	+2.2
3,278,421	-		EFB2_03135	0.34	-0.8
3,278,421	-		EFB2_03135	0.34	-0.3
3,278,421	-		EFB2_03135	0.34	+0.4
3,278,421	-		EFB2_03135	0.34	-0.5
3,278,421	-		EFB2_03135	0.34	+1.8
3,278,421	-		EFB2_03135	0.34	-2.0
3,278,432	+		EFB2_03135	0.35	+2.0
3,278,432	+		EFB2_03135	0.35	-0.6
3,278,432	+		EFB2_03135	0.35	-2.6
3,278,433	-		EFB2_03135	0.35	+0.5
3,278,433	-		EFB2_03135	0.35	-0.5
3,278,447	+		EFB2_03135	0.36	-2.8
3,278,455	+		EFB2_03135	0.37	-0.5
3,278,456	-		EFB2_03135	0.37	+0.8
3,278,486	+		EFB2_03135	0.40	-0.5
3,278,486	+		EFB2_03135	0.40	+0.4
3,278,486	+		EFB2_03135	0.40	+2.5
3,278,486	+		EFB2_03135	0.40	+0.2
3,278,486	+		EFB2_03135	0.40	+1.4
3,278,486	+		EFB2_03135	0.40	+0.7
3,278,486	+		EFB2_03135	0.40	+1.1
3,278,487	-		EFB2_03135	0.40	+2.8
3,278,487	-		EFB2_03135	0.40	+0.2
3,278,487	-		EFB2_03135	0.40	+2.6
3,278,487	-		EFB2_03135	0.40	-1.5
3,278,487	-		EFB2_03135	0.40	+0.5
3,278,487	-		EFB2_03135	0.40	+1.3
3,278,527	+		EFB2_03135	0.44	-0.9
3,278,527	+		EFB2_03135	0.44	+0.7
3,278,527	+		EFB2_03135	0.44	-0.8
3,278,527	+		EFB2_03135	0.44	+0.1
3,278,527	+		EFB2_03135	0.44	+0.2
3,278,527	+		EFB2_03135	0.44	-2.7
3,278,527	+		EFB2_03135	0.44	+0.7
3,278,527	+		EFB2_03135	0.44	-1.0
3,278,527	+		EFB2_03135	0.44	-2.8
3,278,527	+		EFB2_03135	0.44	+0.5
3,278,527	+		EFB2_03135	0.44	-0.8
3,278,528	-		EFB2_03135	0.44	+0.3
3,278,528	-		EFB2_03135	0.44	+1.0
3,278,528	-		EFB2_03135	0.44	+1.0
3,278,528	-		EFB2_03135	0.44	-0.3
3,278,528	-		EFB2_03135	0.44	+0.8
3,278,528	-		EFB2_03135	0.44	+0.0
3,278,531	+		EFB2_03135	0.44	-0.1
3,278,532	-		EFB2_03135	0.44	-1.0
3,278,532	-		EFB2_03135	0.44	-1.7
3,278,532	-		EFB2_03135	0.44	-0.5
3,278,532	-		EFB2_03135	0.44	+0.1
3,278,536	+		EFB2_03135	0.45	-1.3
3,278,536	+		EFB2_03135	0.45	+0.2
3,278,536	+		EFB2_03135	0.45	+1.0
3,278,536	+		EFB2_03135	0.45	+0.1
3,278,536	+		EFB2_03135	0.45	-0.3
3,278,536	+		EFB2_03135	0.45	-0.8
3,278,537	-		EFB2_03135	0.45	-2.3
3,278,537	-		EFB2_03135	0.45	-0.6
3,278,537	-		EFB2_03135	0.45	-0.1
3,278,585	+		EFB2_03135	0.49	-1.7
3,278,585	+		EFB2_03135	0.49	-2.0
3,278,585	+		EFB2_03135	0.49	-1.1
3,278,647	+		EFB2_03135	0.55	-1.4
3,278,647	+		EFB2_03135	0.55	+1.9
3,278,648	-		EFB2_03135	0.55	+0.3
3,278,648	-		EFB2_03135	0.55	+0.5
3,278,648	-		EFB2_03135	0.55	+0.2
3,278,648	-		EFB2_03135	0.55	+0.0
3,278,648	-		EFB2_03135	0.55	+0.5
3,278,654	+		EFB2_03135	0.55	+1.0
3,278,655	-		EFB2_03135	0.55	-0.7
3,278,655	-		EFB2_03135	0.55	+0.3
3,278,660	+		EFB2_03135	0.56	+0.6
3,278,660	+		EFB2_03135	0.56	-1.4
3,278,660	+		EFB2_03135	0.56	+1.2
3,278,687	+		EFB2_03135	0.58	-2.9
3,278,687	+		EFB2_03135	0.58	-0.7
3,278,687	+		EFB2_03135	0.58	-2.4
3,278,687	+		EFB2_03135	0.58	-0.8
3,278,687	+		EFB2_03135	0.58	+1.3
3,278,687	+		EFB2_03135	0.58	-0.6
3,278,687	+		EFB2_03135	0.58	+0.6
3,278,688	-		EFB2_03135	0.58	-0.5
3,278,688	-		EFB2_03135	0.58	+0.3
3,278,688	-		EFB2_03135	0.58	-0.3
3,278,688	-		EFB2_03135	0.58	-0.1
3,278,774	+		EFB2_03135	0.66	-0.2
3,278,775	-		EFB2_03135	0.66	-0.5
3,278,775	-		EFB2_03135	0.66	-0.8
3,278,775	-		EFB2_03135	0.66	-0.4
3,278,792	+		EFB2_03135	0.68	+0.1
3,278,792	+		EFB2_03135	0.68	-1.1
3,278,792	+		EFB2_03135	0.68	-1.5
3,278,792	+		EFB2_03135	0.68	+0.3
3,278,792	+		EFB2_03135	0.68	-1.0
3,278,792	+		EFB2_03135	0.68	+0.1
3,278,792	+		EFB2_03135	0.68	-0.5
3,278,792	+		EFB2_03135	0.68	+2.4
3,278,792	+		EFB2_03135	0.68	-1.2
3,278,793	-		EFB2_03135	0.68	-1.6
3,278,793	-		EFB2_03135	0.68	-0.3
3,278,793	-		EFB2_03135	0.68	+0.6
3,278,793	-		EFB2_03135	0.68	+0.5
3,278,793	-		EFB2_03135	0.68	+1.5
3,278,807	+		EFB2_03135	0.69	-1.0
3,278,827	+		EFB2_03135	0.71	+1.3
3,278,840	-		EFB2_03135	0.72	+0.7
3,278,842	+		EFB2_03135	0.73	+1.1
3,278,842	+		EFB2_03135	0.73	+1.0
3,278,892	+		EFB2_03135	0.77	+0.4
3,278,892	+		EFB2_03135	0.77	-1.3
3,278,893	-		EFB2_03135	0.77	-1.7
3,278,893	-		EFB2_03135	0.77	-1.1
3,278,904	-		EFB2_03135	0.78	-2.4
3,278,939	+		EFB2_03135	0.82	+1.2
3,278,939	+		EFB2_03135	0.82	+0.8
3,278,950	+		EFB2_03135	0.83	-0.1
3,278,950	+		EFB2_03135	0.83	+0.6
3,278,964	+		EFB2_03135	0.84	-0.5
3,278,964	+		EFB2_03135	0.84	-0.1
3,278,964	+		EFB2_03135	0.84	+1.4
3,278,964	+		EFB2_03135	0.84	-2.7
3,278,964	+		EFB2_03135	0.84	+1.7
3,278,964	+		EFB2_03135	0.84	-0.7
3,278,965	-		EFB2_03135	0.84	-1.1
3,278,996	+		EFB2_03135	0.87	-0.5
3,278,996	+		EFB2_03135	0.87	-1.1
3,278,996	+		EFB2_03135	0.87	+3.6
3,278,996	+		EFB2_03135	0.87	+0.5
3,278,996	+		EFB2_03135	0.87	-3.1
3,278,996	+		EFB2_03135	0.87	-0.2
3,278,996	+		EFB2_03135	0.87	+0.7
3,278,996	+		EFB2_03135	0.87	-0.8
3,278,997	-		EFB2_03135	0.87	-0.9
3,279,018	-		EFB2_03135	0.89	-2.1
3,279,018	-		EFB2_03135	0.89	-1.3
3,279,018	-		EFB2_03135	0.89	-1.3
3,279,020	+		EFB2_03135	0.89	+1.5
3,279,020	+		EFB2_03135	0.89	+2.8
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