Strain Fitness in Escherichia fergusonii Becca around EFB2_02873

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,008,620	+		EFB2_02871	0.38	-1.7
3,008,620	+		EFB2_02871	0.38	-0.8
3,008,620	+		EFB2_02871	0.38	+1.9
3,008,621	-		EFB2_02871	0.39	-1.1
3,008,666	+		EFB2_02871	0.51	-1.0
3,008,666	+		EFB2_02871	0.51	-1.4
3,008,666	+		EFB2_02871	0.51	-0.7
3,008,667	-		EFB2_02871	0.52	+0.5
3,008,667	-		EFB2_02871	0.52	-0.1
3,008,667	-		EFB2_02871	0.52	-0.7
3,008,668	+		EFB2_02871	0.52	-0.7
3,008,668	+		EFB2_02871	0.52	-0.5
3,008,669	-		EFB2_02871	0.52	-0.5
3,008,669	-		EFB2_02871	0.52	-0.5
3,008,669	-		EFB2_02871	0.52	+0.5
3,008,669	-		EFB2_02871	0.52	+1.8
3,008,697	-		EFB2_02871	0.60	+0.7
3,008,746	-		EFB2_02871	0.74	+0.4
3,008,820	+				-0.4
3,008,865	+				+0.4
3,008,866	-				-0.8
3,008,866	-				+0.3
3,008,875	+				+0.5
3,008,875	+				-0.2
3,008,875	+				-0.5
3,008,875	+				-0.2
3,008,875	+				+1.0
3,008,876	-				+1.4
3,008,876	-				-0.5
3,008,876	-				+0.2
3,008,920	+		EFB2_02872	0.16	-0.9
3,008,920	+		EFB2_02872	0.16	-1.9
3,008,920	+		EFB2_02872	0.16	+2.1
3,008,920	+		EFB2_02872	0.16	+0.1
3,008,921	-		EFB2_02872	0.16	+2.1
3,008,921	-		EFB2_02872	0.16	-1.4
3,008,921	-		EFB2_02872	0.16	-2.3
3,008,921	-		EFB2_02872	0.16	-1.5
3,008,932	-		EFB2_02872	0.19	+1.0
3,008,992	+		EFB2_02872	0.36	-1.6
3,008,992	+		EFB2_02872	0.36	-0.5
3,008,993	-		EFB2_02872	0.36	+0.1
3,008,993	-		EFB2_02872	0.36	-1.4
3,008,993	-		EFB2_02872	0.36	-0.2
3,009,021	-		EFB2_02872	0.44	-0.2
3,009,089	-		EFB2_02872	0.62	-0.9
3,009,106	+		EFB2_02872	0.67	+0.3
3,009,107	-		EFB2_02872	0.68	-1.3
3,009,107	-		EFB2_02872	0.68	+0.3
3,009,107	-		EFB2_02872	0.68	-0.3
3,009,107	-		EFB2_02872	0.68	-1.6
3,009,107	-		EFB2_02872	0.68	-2.7
3,009,130	+		EFB2_02872	0.74	-2.2
3,009,131	-		EFB2_02872	0.74	-2.1
3,009,162	+		EFB2_02872	0.83	+3.1
3,009,162	+		EFB2_02872	0.83	-0.5
3,009,207	-				-0.9
3,009,207	-				+0.9
3,009,207	-				-2.1
3,009,208	+				-0.5
3,009,208	+				-0.9
3,009,208	+				+1.3
3,009,208	+				-1.1
3,009,208	+				-1.1
3,009,209	-				+1.7
3,009,209	-				+2.7
3,009,209	-				+1.7
3,009,209	-				-2.1
3,009,209	-				-1.4
3,009,209	-				-1.2
3,009,209	-				-0.4
3,009,209	-				+1.3
3,009,209	-				+2.1
3,009,209	-				-1.2
3,009,243	+				+0.8
3,009,243	+				+1.2
3,009,243	+				-1.5
3,009,244	-				-1.3
3,009,244	-				-1.3
3,009,265	-				-1.3
3,009,285	+				-0.3
3,009,285	+				-2.8
3,009,286	-				+1.7
3,009,287	+				+0.1
3,009,287	+				+2.3
3,009,287	+				+1.7
3,009,287	+				-1.1
3,009,287	+				-0.6
3,009,287	+				+0.1
3,009,287	+				-0.5
3,009,287	+				+4.3
3,009,287	+				-1.1
3,009,287	+				-1.1
3,009,287	+				+0.3
3,009,288	-				+1.2
3,009,288	-				-1.4
3,009,288	-				-1.2
3,009,288	-				+0.5
3,009,292	+				+0.1
3,009,292	+				+0.5
3,009,292	+				-2.0
3,009,292	+				-1.2
3,009,292	+				-3.2
3,009,292	+				+1.6
3,009,292	+				-0.2
3,009,293	-				+0.5
3,009,293	-				+1.1
3,009,293	-				-2.6
3,009,293	-				+1.3
3,009,293	-				-2.6
3,009,293	-				+0.5
3,009,304	-				-2.2
3,009,323	+				-0.5
3,009,323	+				+0.4
3,009,323	+				+0.3
3,009,323	+				-1.5
3,009,323	+				-1.2
3,009,324	-				+0.4
3,009,324	-				+3.4
3,009,324	-				-2.6
3,009,324	-				+0.7
3,009,363	+				+1.2
3,009,363	+				+0.2
3,009,363	+				-1.2
3,009,363	+				-0.1
3,009,363	+				-1.6
3,009,363	+				-2.4
3,009,363	+				-0.3
3,009,363	+				-1.4
3,009,364	-				-1.2
3,009,364	-				-2.6
3,009,364	-				+0.6
3,009,364	-				+1.2
3,009,364	-				-1.1
3,009,364	-				+2.1
3,009,364	-				+2.4
3,009,364	-				-1.2
3,009,364	-				-1.7
3,009,365	+				+0.5
3,009,365	+				+0.2
3,009,365	+				-0.5
3,009,365	+				-1.6
3,009,365	+				+1.3
3,009,365	+				+0.8
3,009,365	+				+3.1
3,009,365	+				-0.8
3,009,365	+				+1.5
3,009,365	+				-0.3
3,009,366	-				+0.1
3,009,366	-				+0.9
3,009,366	-				-0.3
3,009,366	-				+3.1
3,009,366	-				-0.6
3,009,366	-				-0.9
3,009,366	-				+1.5
3,009,366	-				+0.2
3,009,366	-				+1.4
3,009,366	-				+2.1
3,009,366	-				-0.2
3,009,366	-				-0.0
3,009,366	-				-0.3
3,009,366	-				+1.4
3,009,366	-				+0.6
3,009,366	-				-2.4
3,009,366	-				-2.3
3,009,366	-				-2.7
3,009,366	-				-1.6
3,009,367	+				-2.1
3,009,367	+				+0.3
3,009,368	-				-0.3
3,009,368	-				+0.5
3,009,368	-				-1.1
3,009,368	-				+0.1
3,009,368	-				+1.4
3,009,368	-				+0.7
3,009,368	-				-0.7
3,009,368	-				-1.9
3,009,368	-				+0.4
3,009,368	-				+0.5
3,009,377	-				+0.4
3,009,377	-				+0.2
3,009,427	+				+0.5
3,009,428	-				-1.6
3,009,492	-				+0.5
3,009,492	-				+0.7
3,009,492	-				+0.4
3,009,495	+				-0.1
3,009,495	+				+2.0
3,009,495	+				+0.6
3,009,495	+				-0.2
3,009,495	+				-0.8
3,009,495	+				-0.5
3,009,495	+				-2.9
3,009,496	-				+0.9
3,009,496	-				-0.8
3,009,496	-				+1.1
3,009,496	-				-0.6
3,009,496	-				-0.9
3,009,496	-				+0.5
3,009,497	+				+0.6
3,009,541	-				-1.8
3,009,541	-				-2.1
3,009,541	-				-1.1
3,009,541	-				+2.0
3,009,585	-				+0.3
3,009,631	+				-0.5
3,009,631	+				+1.0
3,009,631	+				+1.3
3,009,631	+				-1.1
3,009,632	-				-0.9
3,009,632	-				+1.3
3,009,632	-				-2.6
3,009,632	-				+0.7
3,009,643	+				+1.0
3,009,644	-				+0.4
3,009,644	-				-0.2
3,009,644	-				-0.4
3,009,644	-				+0.2
3,009,644	-				+0.9
3,009,644	-				-2.4
3,009,646	+				+0.2
3,009,647	-				-0.1
3,009,647	-				-0.6
3,009,736	-				+0.7
3,009,743	-				-0.9
3,009,743	-				+1.4
3,009,743	-				-0.7
3,009,743	-				-0.6
3,009,749	+				+1.7
3,009,750	-				-0.1
3,009,788	+		EFB2_02873	0.11	+0.4
3,009,789	-		EFB2_02873	0.11	+0.3
3,009,789	-		EFB2_02873	0.11	+0.3
3,009,789	-		EFB2_02873	0.11	+0.6
3,009,806	+		EFB2_02873	0.11	-0.8
3,009,807	-		EFB2_02873	0.11	+1.4
3,009,841	+		EFB2_02873	0.13	-2.1
3,009,842	-		EFB2_02873	0.13	-1.3
3,009,915	+		EFB2_02873	0.16	+0.6
3,009,919	-		EFB2_02873	0.16	+0.1
3,009,941	+		EFB2_02873	0.17	-0.2
3,009,941	+		EFB2_02873	0.17	+2.5
3,009,942	-		EFB2_02873	0.18	-2.6
3,009,942	-		EFB2_02873	0.18	-1.2
3,009,942	-		EFB2_02873	0.18	+0.8
3,009,945	+		EFB2_02873	0.18	-0.8
3,009,945	+		EFB2_02873	0.18	+0.6
3,009,945	+		EFB2_02873	0.18	-0.9
3,009,945	+		EFB2_02873	0.18	-1.2
3,009,945	+		EFB2_02873	0.18	-0.7
3,009,945	+		EFB2_02873	0.18	+0.1
3,009,945	+		EFB2_02873	0.18	+0.9
3,009,945	+		EFB2_02873	0.18	+0.6
3,009,945	+		EFB2_02873	0.18	-1.1
3,009,945	+		EFB2_02873	0.18	-0.2
3,009,945	+		EFB2_02873	0.18	+1.3
3,009,945	+		EFB2_02873	0.18	+0.4
3,009,945	+		EFB2_02873	0.18	-1.2
3,009,945	+		EFB2_02873	0.18	-2.6
3,009,945	+		EFB2_02873	0.18	+0.9
3,009,945	+		EFB2_02873	0.18	-0.5
3,009,945	+		EFB2_02873	0.18	-1.1
3,009,945	+		EFB2_02873	0.18	+0.1
3,009,945	+		EFB2_02873	0.18	-3.5
3,009,945	+		EFB2_02873	0.18	-0.1
3,009,945	+		EFB2_02873	0.18	-0.3
3,009,945	+		EFB2_02873	0.18	+0.4
3,009,945	+		EFB2_02873	0.18	+1.8
3,009,945	+		EFB2_02873	0.18	-0.4
3,009,945	+		EFB2_02873	0.18	+0.7
3,009,945	+		EFB2_02873	0.18	+0.4
3,009,945	+		EFB2_02873	0.18	+0.2
3,009,945	+		EFB2_02873	0.18	+0.7
3,009,945	+		EFB2_02873	0.18	+1.1
3,009,945	+		EFB2_02873	0.18	-2.9
3,009,945	+		EFB2_02873	0.18	+1.1
3,009,945	+		EFB2_02873	0.18	-1.8
3,009,945	+		EFB2_02873	0.18	-1.6
3,009,945	+		EFB2_02873	0.18	+0.3
3,009,945	+		EFB2_02873	0.18	+0.3
3,009,945	+		EFB2_02873	0.18	+0.0
3,009,945	+		EFB2_02873	0.18	-0.2
3,009,945	+		EFB2_02873	0.18	+0.4
3,009,945	+		EFB2_02873	0.18	+1.6
3,009,945	+		EFB2_02873	0.18	-2.3
3,009,945	+		EFB2_02873	0.18	+0.1
3,009,945	+		EFB2_02873	0.18	-0.8
3,009,945	+		EFB2_02873	0.18	+0.6
3,009,945	+		EFB2_02873	0.18	+0.2
3,009,945	+		EFB2_02873	0.18	-1.7
3,009,945	+		EFB2_02873	0.18	-0.3
3,009,945	+		EFB2_02873	0.18	+0.7
3,009,945	+		EFB2_02873	0.18	-0.1
3,009,945	+		EFB2_02873	0.18	-2.2
3,009,945	+		EFB2_02873	0.18	+0.4
3,009,945	+		EFB2_02873	0.18	-2.9
3,009,945	+		EFB2_02873	0.18	-0.3
3,009,945	+		EFB2_02873	0.18	+0.4
3,009,946	-		EFB2_02873	0.18	-0.3
3,009,946	-		EFB2_02873	0.18	-0.5
3,009,946	-		EFB2_02873	0.18	+0.8
3,009,946	-		EFB2_02873	0.18	-0.5
3,009,946	-		EFB2_02873	0.18	-0.0
3,009,946	-		EFB2_02873	0.18	+1.3
3,009,946	-		EFB2_02873	0.18	-0.5
3,009,946	-		EFB2_02873	0.18	+4.1
3,009,946	-		EFB2_02873	0.18	-0.1
3,009,946	-		EFB2_02873	0.18	-0.9
3,009,946	-		EFB2_02873	0.18	+0.2
3,009,946	-		EFB2_02873	0.18	+0.5
3,009,946	-		EFB2_02873	0.18	+1.3
3,009,946	-		EFB2_02873	0.18	+1.1
3,009,946	-		EFB2_02873	0.18	-0.1
3,009,946	-		EFB2_02873	0.18	-2.4
3,009,946	-		EFB2_02873	0.18	+1.2
3,009,946	-		EFB2_02873	0.18	+0.8
3,009,946	-		EFB2_02873	0.18	-0.5
3,009,946	-		EFB2_02873	0.18	+1.1
3,009,946	-		EFB2_02873	0.18	+0.9
3,009,946	-		EFB2_02873	0.18	+0.5
3,009,946	-		EFB2_02873	0.18	-0.7
3,009,946	-		EFB2_02873	0.18	-0.7
3,009,946	-		EFB2_02873	0.18	-0.9
3,009,946	-		EFB2_02873	0.18	+0.5
3,009,946	-		EFB2_02873	0.18	-0.5
3,009,946	-		EFB2_02873	0.18	+1.4
3,009,946	-		EFB2_02873	0.18	+0.3
3,009,946	-		EFB2_02873	0.18	-0.4
3,009,946	-		EFB2_02873	0.18	+1.1
3,009,946	-		EFB2_02873	0.18	+1.6
3,009,946	-		EFB2_02873	0.18	+3.0
3,009,947	+		EFB2_02873	0.18	-2.3
3,009,947	+		EFB2_02873	0.18	+2.9
3,009,947	+		EFB2_02873	0.18	-1.9
3,009,947	+		EFB2_02873	0.18	-2.1
3,009,947	+		EFB2_02873	0.18	+1.0
3,009,947	+		EFB2_02873	0.18	-0.1
3,009,948	-		EFB2_02873	0.18	+0.5
3,009,948	-		EFB2_02873	0.18	+0.5
3,009,948	-		EFB2_02873	0.18	+0.7
3,009,948	-		EFB2_02873	0.18	-1.7
3,009,948	-		EFB2_02873	0.18	-0.2
3,009,948	-		EFB2_02873	0.18	+0.5
3,009,948	-		EFB2_02873	0.18	+1.4
3,009,948	-		EFB2_02873	0.18	+1.4
3,009,948	-		EFB2_02873	0.18	-0.5
3,009,948	-		EFB2_02873	0.18	+0.8
3,009,948	-		EFB2_02873	0.18	-0.7
3,009,948	-		EFB2_02873	0.18	-0.0
3,009,969	+		EFB2_02873	0.19	-1.2
3,009,969	+		EFB2_02873	0.19	-2.2
3,009,969	+		EFB2_02873	0.19	-0.9
3,009,969	+		EFB2_02873	0.19	-1.8
3,009,970	-		EFB2_02873	0.19	+0.0
3,009,970	-		EFB2_02873	0.19	-2.4
3,009,970	-		EFB2_02873	0.19	-1.2
3,010,030	+		EFB2_02873	0.22	-0.2
3,010,030	+		EFB2_02873	0.22	+0.1
3,010,031	-		EFB2_02873	0.22	-0.5
3,010,031	-		EFB2_02873	0.22	+0.8
3,010,036	+		EFB2_02873	0.22	+1.1
3,010,036	+		EFB2_02873	0.22	+2.1
3,010,036	+		EFB2_02873	0.22	+0.5
3,010,036	+		EFB2_02873	0.22	-2.3
3,010,036	+		EFB2_02873	0.22	-0.9
3,010,037	-		EFB2_02873	0.22	-2.9
3,010,037	-		EFB2_02873	0.22	-2.4
3,010,037	-		EFB2_02873	0.22	-0.5
3,010,037	-		EFB2_02873	0.22	-1.4
3,010,091	+		EFB2_02873	0.24	-1.5
3,010,091	+		EFB2_02873	0.24	-0.0
3,010,091	+		EFB2_02873	0.24	+0.9
3,010,091	+		EFB2_02873	0.24	+0.8
3,010,091	+		EFB2_02873	0.24	-0.9
3,010,091	+		EFB2_02873	0.24	-1.8
3,010,091	+		EFB2_02873	0.24	+1.1
3,010,091	+		EFB2_02873	0.24	-0.6
3,010,091	+		EFB2_02873	0.24	-1.4
3,010,091	+		EFB2_02873	0.24	-1.4
3,010,091	+		EFB2_02873	0.24	-0.9
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