Strain Fitness in Escherichia fergusonii Becca around EFB2_02430

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,570,152	+		EFB2_02428	0.53	-1.1
2,570,152	+		EFB2_02428	0.53	+2.2
2,570,194	+		EFB2_02428	0.56	+1.9
2,570,195	-		EFB2_02428	0.56	+0.8
2,570,216	+		EFB2_02428	0.57	+0.9
2,570,217	-		EFB2_02428	0.58	-2.4
2,570,230	+		EFB2_02428	0.58	+2.0
2,570,230	+		EFB2_02428	0.58	+0.3
2,570,231	-		EFB2_02428	0.59	+0.3
2,570,240	+		EFB2_02428	0.59	+1.9
2,570,240	+		EFB2_02428	0.59	+1.9
2,570,327	-		EFB2_02428	0.65	+1.3
2,570,327	-		EFB2_02428	0.65	-0.4
2,570,330	+		EFB2_02428	0.65	-1.0
2,570,331	-		EFB2_02428	0.65	+0.0
2,570,333	+		EFB2_02428	0.66	-2.2
2,570,333	+		EFB2_02428	0.66	+3.8
2,570,333	+		EFB2_02428	0.66	-3.6
2,570,333	+		EFB2_02428	0.66	+0.0
2,570,333	+		EFB2_02428	0.66	-0.2
2,570,333	+		EFB2_02428	0.66	+0.1
2,570,333	+		EFB2_02428	0.66	+1.3
2,570,333	+		EFB2_02428	0.66	+1.3
2,570,333	+		EFB2_02428	0.66	-0.7
2,570,333	+		EFB2_02428	0.66	-1.7
2,570,333	+		EFB2_02428	0.66	+1.5
2,570,333	+		EFB2_02428	0.66	+0.9
2,570,333	+		EFB2_02428	0.66	+1.1
2,570,333	+		EFB2_02428	0.66	+1.4
2,570,333	+		EFB2_02428	0.66	-1.6
2,570,333	+		EFB2_02428	0.66	-0.1
2,570,333	+		EFB2_02428	0.66	-1.0
2,570,334	-		EFB2_02428	0.66	+1.0
2,570,334	-		EFB2_02428	0.66	-0.5
2,570,334	-		EFB2_02428	0.66	+1.8
2,570,334	-		EFB2_02428	0.66	+4.2
2,570,334	-		EFB2_02428	0.66	+0.5
2,570,334	-		EFB2_02428	0.66	-1.5
2,570,334	-		EFB2_02428	0.66	+0.3
2,570,334	-		EFB2_02428	0.66	-0.8
2,570,334	-		EFB2_02428	0.66	+1.3
2,570,334	-		EFB2_02428	0.66	-0.7
2,570,334	-		EFB2_02428	0.66	+0.0
2,570,334	-		EFB2_02428	0.66	-1.8
2,570,334	-		EFB2_02428	0.66	+0.2
2,570,334	-		EFB2_02428	0.66	-0.6
2,570,334	-		EFB2_02428	0.66	+0.8
2,570,334	-		EFB2_02428	0.66	+2.3
2,570,334	-		EFB2_02428	0.66	+1.0
2,570,344	+		EFB2_02428	0.66	+0.0
2,570,365	+		EFB2_02428	0.68	-2.8
2,570,381	+		EFB2_02428	0.69	+0.3
2,570,381	+		EFB2_02428	0.69	-1.4
2,570,382	-		EFB2_02428	0.69	-2.1
2,570,414	+		EFB2_02428	0.71	+0.0
2,570,415	-		EFB2_02428	0.71	-0.0
2,570,415	-		EFB2_02428	0.71	-0.5
2,570,415	-		EFB2_02428	0.71	-1.8
2,570,415	-		EFB2_02428	0.71	-1.5
2,570,416	+		EFB2_02428	0.71	-2.0
2,570,417	-		EFB2_02428	0.71	-0.9
2,570,417	-		EFB2_02428	0.71	+2.0
2,570,417	-		EFB2_02428	0.71	-0.3
2,570,422	+		EFB2_02428	0.72	+0.5
2,570,422	+		EFB2_02428	0.72	-1.0
2,570,422	+		EFB2_02428	0.72	-1.6
2,570,422	+		EFB2_02428	0.72	+0.6
2,570,422	+		EFB2_02428	0.72	+1.4
2,570,422	+		EFB2_02428	0.72	+0.1
2,570,423	-		EFB2_02428	0.72	-2.1
2,570,423	-		EFB2_02428	0.72	+0.7
2,570,423	-		EFB2_02428	0.72	-0.2
2,570,423	-		EFB2_02428	0.72	+1.7
2,570,460	+		EFB2_02428	0.74	-1.0
2,570,466	-		EFB2_02428	0.75	-2.2
2,570,466	-		EFB2_02428	0.75	-1.5
2,570,509	+		EFB2_02428	0.78	+1.1
2,570,509	+		EFB2_02428	0.78	-0.4
2,570,573	+		EFB2_02428	0.82	-1.7
2,570,585	+		EFB2_02428	0.83	+0.8
2,570,622	+		EFB2_02428	0.86	-2.1
2,570,643	+		EFB2_02428	0.87	+0.8
2,570,643	+		EFB2_02428	0.87	-1.3
2,570,643	+		EFB2_02428	0.87	-1.9
2,570,643	+		EFB2_02428	0.87	-1.5
2,570,723	+				-3.4
2,570,723	+				+0.6
2,570,723	+				-0.3
2,570,723	+				-0.1
2,570,723	+				-2.4
2,570,724	-				+4.9
2,570,732	-				+0.0
2,570,766	+				-1.0
2,570,770	+				+1.2
2,570,770	+				+1.3
2,570,770	+				-2.9
2,570,770	+				-1.6
2,570,770	+				-0.7
2,570,770	+				+1.3
2,570,770	+				-0.1
2,570,770	+				+0.4
2,570,770	+				+0.5
2,570,770	+				-1.4
2,570,770	+				-0.4
2,570,783	+				+0.4
2,570,821	+				-1.7
2,570,821	+				-0.6
2,570,821	+				+1.3
2,570,821	+				+0.5
2,570,822	-				-1.2
2,570,822	-				+0.5
2,570,823	+				-2.5
2,570,824	-				-2.4
2,570,842	-				+2.6
2,570,881	+				+0.3
2,570,881	+				+0.8
2,570,881	+				+0.0
2,570,881	+				+0.6
2,570,882	-				-1.8
2,570,885	+				+1.0
2,570,885	+				-1.9
2,570,885	+				-0.2
2,570,885	+				+1.0
2,570,885	+				+0.8
2,570,885	+				-0.5
2,570,885	+				-2.2
2,570,885	+				-1.4
2,570,885	+				+0.9
2,570,885	+				+3.9
2,570,885	+				-0.3
2,570,885	+				-2.0
2,570,885	+				+1.6
2,570,885	+				+1.9
2,570,885	+				-1.7
2,570,885	+				+1.8
2,570,885	+				+2.4
2,570,885	+				+1.0
2,570,885	+				-1.0
2,570,885	+				-1.0
2,570,885	+				-0.0
2,570,886	-				+1.0
2,570,886	-				-1.9
2,570,886	-				-2.1
2,570,886	-				-0.4
2,570,886	-				+1.0
2,570,886	-				+0.7
2,570,886	-				+0.0
2,570,886	-				+0.8
2,570,886	-				-1.4
2,570,886	-				-0.7
2,570,886	-				+0.4
2,570,886	-				+0.5
2,570,886	-				-0.3
2,570,886	-				-1.2
2,570,886	-				+1.9
2,570,886	-				+0.0
2,570,886	-				-0.1
2,570,886	-				+1.8
2,570,886	-				-0.2
2,570,886	-				-0.5
2,570,886	-				+0.5
2,570,886	-				-2.1
2,570,886	-				+1.0
2,570,889	+				+0.1
2,570,889	+				-0.7
2,570,890	-				+0.0
2,570,890	-				-1.7
2,570,890	-				-1.8
2,570,890	-				+0.8
2,570,901	+				-1.7
2,570,901	+				-1.6
2,570,901	+				+0.4
2,570,901	+				-0.3
2,570,901	+				-0.1
2,570,902	-				-0.4
2,570,902	-				+1.5
2,570,902	-				+3.6
2,570,902	-				-0.2
2,570,903	+				+0.8
2,570,903	+				+0.0
2,570,903	+				+2.2
2,570,903	+				-1.2
2,570,904	-				-0.5
2,570,904	-				-1.1
2,570,904	-				-1.7
2,570,904	-				-3.2
2,570,906	+		EFB2_02429	0.10	-2.6
2,570,907	-		EFB2_02429	0.11	-0.8
2,570,907	-		EFB2_02429	0.11	-2.5
2,570,931	+		EFB2_02429	0.21	-1.8
2,570,931	+		EFB2_02429	0.21	+0.4
2,570,931	+		EFB2_02429	0.21	+2.4
2,570,931	+		EFB2_02429	0.21	+0.6
2,570,931	+		EFB2_02429	0.21	-0.7
2,570,932	-		EFB2_02429	0.22	+0.8
2,570,932	-		EFB2_02429	0.22	-1.8
2,570,944	-		EFB2_02429	0.27	+0.6
2,570,956	+		EFB2_02429	0.33	-1.8
2,570,956	+		EFB2_02429	0.33	+0.5
2,570,957	-		EFB2_02429	0.33	-0.2
2,571,015	+		EFB2_02429	0.60	-0.6
2,571,015	+		EFB2_02429	0.60	-0.7
2,571,015	+		EFB2_02429	0.60	-2.2
2,571,015	+		EFB2_02429	0.60	+0.6
2,571,015	+		EFB2_02429	0.60	-1.2
2,571,015	+		EFB2_02429	0.60	+0.7
2,571,015	+		EFB2_02429	0.60	-0.2
2,571,015	+		EFB2_02429	0.60	-2.0
2,571,016	-		EFB2_02429	0.60	+0.7
2,571,016	-		EFB2_02429	0.60	-0.1
2,571,067	-		EFB2_02429	0.84	-0.3
2,571,067	-		EFB2_02429	0.84	-0.7
2,571,079	+		EFB2_02429	0.89	+0.7
2,571,080	-		EFB2_02429	0.89	-0.4
2,571,080	-		EFB2_02429	0.89	-2.2
2,571,088	+				-1.7
2,571,088	+				+0.5
2,571,089	-				-1.4
2,571,089	-				-0.8
2,571,135	+				+0.1
2,571,135	+				+3.1
2,571,135	+				+0.5
2,571,135	+				-1.7
2,571,136	-				+3.3
2,571,136	-				-2.4
2,571,136	-				+0.9
2,571,136	-				-1.1
2,571,136	-				+2.4
2,571,136	-				+1.3
2,571,136	-				+1.9
2,571,136	-				+1.0
2,571,144	+				+1.6
2,571,145	-				-0.7
2,571,145	-				-0.5
2,571,145	-				-1.7
2,571,145	-				+1.0
2,571,152	+				+0.0
2,571,152	+				-1.0
2,571,153	-				+1.3
2,571,153	-				-1.1
2,571,162	-				-2.2
2,571,162	-				-0.7
2,571,162	-				-2.6
2,571,184	+		EFB2_02430	0.13	+2.2
2,571,185	-		EFB2_02430	0.13	-1.1
2,571,185	-		EFB2_02430	0.13	-0.8
2,571,185	-		EFB2_02430	0.13	-2.1
2,571,185	-		EFB2_02430	0.13	-0.2
2,571,185	-		EFB2_02430	0.13	+0.6
2,571,185	-		EFB2_02430	0.13	-1.0
2,571,185	-		EFB2_02430	0.13	+0.1
2,571,199	-		EFB2_02430	0.17	-1.4
2,571,199	-		EFB2_02430	0.17	+1.2
2,571,202	+		EFB2_02430	0.18	+0.5
2,571,202	+		EFB2_02430	0.18	-0.7
2,571,203	-		EFB2_02430	0.18	+0.5
2,571,203	-		EFB2_02430	0.18	-1.4
2,571,203	-		EFB2_02430	0.18	-1.7
2,571,223	-		EFB2_02430	0.23	+0.4
2,571,267	+		EFB2_02430	0.35	-0.7
2,571,282	+		EFB2_02430	0.39	+1.4
2,571,282	+		EFB2_02430	0.39	-2.2
2,571,282	+		EFB2_02430	0.39	-1.7
2,571,282	+		EFB2_02430	0.39	-0.9
2,571,282	+		EFB2_02430	0.39	-0.8
2,571,283	-		EFB2_02430	0.39	-0.4
2,571,283	-		EFB2_02430	0.39	-1.9
2,571,283	-		EFB2_02430	0.39	-1.1
2,571,298	+		EFB2_02430	0.43	+0.3
2,571,299	-		EFB2_02430	0.43	-1.6
2,571,299	-		EFB2_02430	0.43	+1.0
2,571,299	-		EFB2_02430	0.43	+3.0
2,571,334	+		EFB2_02430	0.52	-1.2
2,571,348	+		EFB2_02430	0.56	+1.1
2,571,348	+		EFB2_02430	0.56	+1.4
2,571,348	+		EFB2_02430	0.56	-3.2
2,571,348	+		EFB2_02430	0.56	-1.0
2,571,348	+		EFB2_02430	0.56	-0.8
2,571,349	-		EFB2_02430	0.56	-1.1
2,571,349	-		EFB2_02430	0.56	-1.0
2,571,349	-		EFB2_02430	0.56	+2.3
2,571,349	-		EFB2_02430	0.56	-0.8
2,571,349	-		EFB2_02430	0.56	-0.2
2,571,349	-		EFB2_02430	0.56	-3.2
2,571,349	-		EFB2_02430	0.56	+2.3
2,571,356	+		EFB2_02430	0.58	-1.8
2,571,356	+		EFB2_02430	0.58	+3.7
2,571,356	+		EFB2_02430	0.58	+0.5
2,571,357	-		EFB2_02430	0.58	-0.1
2,571,357	-		EFB2_02430	0.58	-2.4
2,571,357	-		EFB2_02430	0.58	+0.0
2,571,357	-		EFB2_02430	0.58	-1.4
2,571,357	-		EFB2_02430	0.58	-1.8
2,571,357	-		EFB2_02430	0.58	-0.5
2,571,357	-		EFB2_02430	0.58	-1.0
2,571,380	-		EFB2_02430	0.64	-0.2
2,571,380	-		EFB2_02430	0.64	+0.8
2,571,481	+				-1.8
2,571,481	+				+0.2
2,571,482	-				+2.6
2,571,482	-				+1.8
2,571,490	+				+1.6
2,571,491	-				-1.5
2,571,491	-				-0.5
2,571,493	+				-1.1
2,571,494	-				+1.4
2,571,494	-				-1.7
2,571,494	-				+1.6
2,571,494	-				-0.5
2,571,523	+				-1.0
2,571,523	+				-1.5
2,571,524	-				-0.5
2,571,524	-				+0.2
2,571,524	-				-2.7
2,571,524	-				-0.2
2,571,524	-				+0.8
2,571,524	-				+1.4
2,571,556	-				-1.4
2,571,632	-		EFB2_02431	0.22	-0.7
2,571,632	-		EFB2_02431	0.22	+0.2
2,571,632	-		EFB2_02431	0.22	-1.1
2,571,632	-		EFB2_02431	0.22	+1.5
2,571,653	-		EFB2_02431	0.26	-0.4
2,571,653	-		EFB2_02431	0.26	-2.6
2,571,653	-		EFB2_02431	0.26	-0.6
2,571,653	-		EFB2_02431	0.26	-0.2
2,571,653	-		EFB2_02431	0.26	-1.6
2,571,653	-		EFB2_02431	0.26	-3.7
2,571,653	-		EFB2_02431	0.26	+0.9
2,571,653	-		EFB2_02431	0.26	+0.1
2,571,673	-		EFB2_02431	0.31	-0.0
2,571,697	-		EFB2_02431	0.37	-1.4
2,571,697	-		EFB2_02431	0.37	-1.5
2,571,697	-		EFB2_02431	0.37	+0.6
2,571,697	-		EFB2_02431	0.37	+0.0
2,571,733	-		EFB2_02431	0.45	+2.5
2,571,733	-		EFB2_02431	0.45	+1.3
2,571,733	-		EFB2_02431	0.45	+1.3
2,571,754	-		EFB2_02431	0.50	-2.7
2,571,754	-		EFB2_02431	0.50	-0.7
2,571,754	-		EFB2_02431	0.50	+1.1
2,571,808	-		EFB2_02431	0.62	+2.0
2,571,811	-		EFB2_02431	0.63	+0.4
2,571,811	-		EFB2_02431	0.63	+2.1
2,571,811	-		EFB2_02431	0.63	+0.0
2,571,811	-		EFB2_02431	0.63	-0.2
2,571,829	-		EFB2_02431	0.67	+0.4
2,571,829	-		EFB2_02431	0.67	-0.8
2,571,844	-		EFB2_02431	0.70	-0.7
2,571,844	-		EFB2_02431	0.70	+1.0
2,571,844	-		EFB2_02431	0.70	+0.8
2,571,844	-		EFB2_02431	0.70	-2.9
2,571,862	-		EFB2_02431	0.74	-2.1
2,571,879	-		EFB2_02431	0.78	-1.7
2,571,879	-		EFB2_02431	0.78	+1.5
2,571,910	-		EFB2_02431	0.86	+0.8
2,571,923	-		EFB2_02431	0.89	+0.0
2,571,964	-				-0.6
2,572,028	+				+0.7
2,572,103	+				+0.8
2,572,107	+				-1.2
2,572,108	-				+2.3
2,572,108	-				+1.1
2,572,122	+				-0.2
2,572,122	+				-0.8
2,572,122	+				+0.3
2,572,132	+				-0.7
2,572,133	-				+0.6
2,572,139	+				-0.8
2,572,139	+				-1.7
2,572,140	-				+0.6
2,572,141	+				+0.7
2,572,141	+				+1.7
2,572,141	+				+2.8
2,572,141	+				+0.1
2,572,142	-				-0.1
2,572,142	-				-0.8
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2,572,385	-		EFB2_02432	0.30	-1.7
2,572,385	-		EFB2_02432	0.30	-2.4