Strain Fitness in Escherichia fergusonii Becca around EFB2_02002

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,159,116	+				-0.0
2,159,174	+				+0.8
2,159,174	+				-0.8
2,159,289	+		EFB2_02001	0.20	+1.8
2,159,290	-		EFB2_02001	0.20	+0.8
2,159,290	-		EFB2_02001	0.20	+2.5
2,159,395	-		EFB2_02001	0.31	+0.1
2,159,442	+		EFB2_02001	0.35	-3.0
2,159,442	+		EFB2_02001	0.35	-1.6
2,159,445	+		EFB2_02001	0.36	-0.4
2,159,445	+		EFB2_02001	0.36	-0.2
2,159,446	-		EFB2_02001	0.36	+0.1
2,159,446	-		EFB2_02001	0.36	-0.9
2,159,520	+		EFB2_02001	0.43	-1.4
2,159,520	+		EFB2_02001	0.43	+1.7
2,159,521	-		EFB2_02001	0.43	+1.9
2,159,521	-		EFB2_02001	0.43	-0.0
2,159,555	+		EFB2_02001	0.47	+0.9
2,159,555	+		EFB2_02001	0.47	-0.5
2,159,555	+		EFB2_02001	0.47	-1.6
2,159,556	-		EFB2_02001	0.47	-1.3
2,159,556	-		EFB2_02001	0.47	-1.0
2,159,596	-		EFB2_02001	0.51	+0.1
2,159,597	+		EFB2_02001	0.51	+0.0
2,159,597	+		EFB2_02001	0.51	+1.5
2,159,597	+		EFB2_02001	0.51	+0.2
2,159,598	-		EFB2_02001	0.51	+0.9
2,159,598	-		EFB2_02001	0.51	+0.5
2,159,598	-		EFB2_02001	0.51	+1.9
2,159,617	+		EFB2_02001	0.53	+1.1
2,159,618	-		EFB2_02001	0.53	+0.5
2,159,618	-		EFB2_02001	0.53	-2.0
2,159,653	-		EFB2_02001	0.56	+1.0
2,159,718	+		EFB2_02001	0.63	+0.1
2,159,719	-		EFB2_02001	0.63	-0.4
2,159,778	+		EFB2_02001	0.69	+1.3
2,159,778	+		EFB2_02001	0.69	-1.4
2,159,778	+		EFB2_02001	0.69	-1.0
2,159,778	+		EFB2_02001	0.69	+0.9
2,159,779	-		EFB2_02001	0.69	+0.8
2,159,779	-		EFB2_02001	0.69	-0.2
2,159,779	-		EFB2_02001	0.69	+1.6
2,159,779	-		EFB2_02001	0.69	-0.7
2,159,779	-		EFB2_02001	0.69	-0.9
2,159,779	-		EFB2_02001	0.69	-0.1
2,159,825	+		EFB2_02001	0.74	-0.3
2,159,825	+		EFB2_02001	0.74	+1.9
2,159,826	-		EFB2_02001	0.74	+1.7
2,159,856	+		EFB2_02001	0.77	-1.9
2,159,892	+		EFB2_02001	0.80	+0.6
2,159,919	+		EFB2_02001	0.83	+3.3
2,159,919	+		EFB2_02001	0.83	+0.6
2,159,920	-		EFB2_02001	0.83	-2.7
2,159,979	-		EFB2_02001	0.89	+0.6
2,160,078	+				-0.5
2,160,078	+				+0.6
2,160,078	+				-0.7
2,160,078	+				-2.4
2,160,078	+				+0.1
2,160,078	+				-1.9
2,160,079	-				+1.4
2,160,079	-				+0.1
2,160,079	-				-2.8
2,160,082	-				+1.4
2,160,106	+				-0.1
2,160,115	+				+0.6
2,160,115	+				+1.8
2,160,115	+				-1.5
2,160,116	-				-1.0
2,160,117	+				-1.9
2,160,117	+				+0.1
2,160,117	+				+1.6
2,160,117	+				-1.0
2,160,117	+				-2.2
2,160,117	+				+2.1
2,160,117	+				-0.5
2,160,117	+				+0.9
2,160,117	+				+2.7
2,160,117	+				-1.3
2,160,117	+				-0.7
2,160,117	+				-0.5
2,160,117	+				-0.7
2,160,117	+				+0.6
2,160,118	-				+0.2
2,160,118	-				-0.2
2,160,118	-				-0.2
2,160,118	-				+0.7
2,160,118	-				+0.8
2,160,118	-				+1.5
2,160,118	-				+1.0
2,160,118	-				-0.2
2,160,118	-				+0.6
2,160,118	-				+0.9
2,160,118	-				+1.7
2,160,118	-				-0.5
2,160,118	-				+0.3
2,160,118	-				+0.2
2,160,181	+		EFB2_02002	0.18	-0.9
2,160,181	+		EFB2_02002	0.18	+0.6
2,160,182	-		EFB2_02002	0.19	-0.9
2,160,182	-		EFB2_02002	0.19	-1.9
2,160,224	+		EFB2_02002	0.28	+1.6
2,160,252	-		EFB2_02002	0.34	-0.2
2,160,266	-		EFB2_02002	0.37	-1.6
2,160,266	-		EFB2_02002	0.37	-2.6
2,160,282	+		EFB2_02002	0.40	-1.7
2,160,282	+		EFB2_02002	0.40	-1.0
2,160,283	-		EFB2_02002	0.40	+1.0
2,160,283	-		EFB2_02002	0.40	-0.2
2,160,283	-		EFB2_02002	0.40	-2.2
2,160,329	+		EFB2_02002	0.50	-0.8
2,160,330	-		EFB2_02002	0.51	-0.2
2,160,330	-		EFB2_02002	0.51	+1.1
2,160,330	-		EFB2_02002	0.51	-2.9
2,160,337	+		EFB2_02002	0.52	+0.7
2,160,337	+		EFB2_02002	0.52	-0.1
2,160,337	+		EFB2_02002	0.52	-1.0
2,160,338	-		EFB2_02002	0.52	+0.3
2,160,339	+		EFB2_02002	0.52	-0.9
2,160,339	+		EFB2_02002	0.52	-0.7
2,160,339	+		EFB2_02002	0.52	-1.0
2,160,339	+		EFB2_02002	0.52	-1.3
2,160,339	+		EFB2_02002	0.52	+2.1
2,160,339	+		EFB2_02002	0.52	-0.7
2,160,340	-		EFB2_02002	0.53	+1.1
2,160,340	-		EFB2_02002	0.53	-0.0
2,160,340	-		EFB2_02002	0.53	+0.0
2,160,340	-		EFB2_02002	0.53	+0.2
2,160,340	-		EFB2_02002	0.53	-0.0
2,160,340	-		EFB2_02002	0.53	-1.5
2,160,340	-		EFB2_02002	0.53	+0.6
2,160,340	-		EFB2_02002	0.53	+0.9
2,160,340	-		EFB2_02002	0.53	-0.1
2,160,340	-		EFB2_02002	0.53	+1.1
2,160,340	-		EFB2_02002	0.53	+1.2
2,160,340	-		EFB2_02002	0.53	-0.5
2,160,340	-		EFB2_02002	0.53	-2.1
2,160,373	+		EFB2_02002	0.60	+0.2
2,160,373	+		EFB2_02002	0.60	-1.0
2,160,374	-		EFB2_02002	0.60	+0.6
2,160,374	-		EFB2_02002	0.60	+0.6
2,160,379	+		EFB2_02002	0.61	-0.9
2,160,390	+		EFB2_02002	0.63	+0.1
2,160,390	+		EFB2_02002	0.63	-0.3
2,160,391	-		EFB2_02002	0.64	-0.2
2,160,391	-		EFB2_02002	0.64	+0.0
2,160,391	-		EFB2_02002	0.64	-2.4
2,160,391	-		EFB2_02002	0.64	-2.3
2,160,391	-		EFB2_02002	0.64	+0.7
2,160,459	+		EFB2_02002	0.78	-2.0
2,160,459	+		EFB2_02002	0.78	-1.2
2,160,459	+		EFB2_02002	0.78	+0.8
2,160,459	+		EFB2_02002	0.78	+0.3
2,160,459	+		EFB2_02002	0.78	-2.1
2,160,460	-		EFB2_02002	0.78	+0.1
2,160,460	-		EFB2_02002	0.78	-1.2
2,160,460	-		EFB2_02002	0.78	+1.0
2,160,460	-		EFB2_02002	0.78	+3.3
2,160,465	+		EFB2_02002	0.80	-1.9
2,160,465	+		EFB2_02002	0.80	+0.6
2,160,494	-		EFB2_02002	0.86	+0.4
2,160,550	-				+0.1
2,160,584	-				+3.1
2,160,598	-				-1.4
2,160,598	-				+0.3
2,160,601	+				+0.3
2,160,601	+				+0.1
2,160,601	+				-2.3
2,160,601	+				+1.1
2,160,602	-				+0.6
2,160,602	-				-0.2
2,160,646	-				+0.2
2,160,646	-				-1.9
2,160,653	+				-1.4
2,160,653	+				+0.7
2,160,653	+				-0.3
2,160,654	-				+3.0
2,160,654	-				+2.3
2,160,654	-				-0.7
2,160,654	-				-1.9
2,160,654	-				-0.9
2,160,654	-				+0.1
2,160,665	+				+1.6
2,160,675	+				+1.2
2,160,676	-				+0.4
2,160,676	-				+1.9
2,160,690	+				-0.5
2,160,690	+				+0.2
2,160,691	-				+0.9
2,160,697	+				-0.2
2,160,697	+				-2.1
2,160,697	+				-2.7
2,160,697	+				-0.1
2,160,698	-				+0.4
2,160,709	+				-1.0
2,160,709	+				-0.5
2,160,709	+				+1.6
2,160,709	+				-1.4
2,160,709	+				-1.1
2,160,709	+				-1.9
2,160,709	+				+0.8
2,160,709	+				+0.6
2,160,710	-				+0.7
2,160,710	-				+0.7
2,160,710	-				+0.9
2,160,710	-				-0.2
2,160,710	-				+0.4
2,160,710	-				-1.2
2,160,710	-				+1.7
2,160,732	+				+1.8
2,160,733	-				+1.0
2,160,733	-				-1.6
2,160,816	+		EFB2_02003	0.13	+0.5
2,160,817	-		EFB2_02003	0.14	-0.3
2,160,847	+		EFB2_02003	0.16	+0.1
2,160,848	-		EFB2_02003	0.16	-0.3
2,160,876	+		EFB2_02003	0.19	+0.1
2,160,876	+		EFB2_02003	0.19	-1.4
2,160,877	-		EFB2_02003	0.19	-2.4
2,160,913	+		EFB2_02003	0.22	-2.2
2,160,914	-		EFB2_02003	0.22	+0.3
2,160,954	+		EFB2_02003	0.26	-0.3
2,160,954	+		EFB2_02003	0.26	-0.2
2,160,954	+		EFB2_02003	0.26	-2.9
2,160,955	-		EFB2_02003	0.26	-2.8
2,160,988	+		EFB2_02003	0.29	+2.7
2,160,989	-		EFB2_02003	0.29	+1.1
2,160,989	-		EFB2_02003	0.29	+1.1
2,161,050	+		EFB2_02003	0.34	-1.3
2,161,050	+		EFB2_02003	0.34	-1.0
2,161,050	+		EFB2_02003	0.34	-1.0
2,161,050	+		EFB2_02003	0.34	+1.0
2,161,050	+		EFB2_02003	0.34	-2.4
2,161,051	-		EFB2_02003	0.34	+1.1
2,161,051	-		EFB2_02003	0.34	-1.7
2,161,051	-		EFB2_02003	0.34	+1.1
2,161,051	-		EFB2_02003	0.34	-1.4
2,161,060	+		EFB2_02003	0.35	+1.4
2,161,061	-		EFB2_02003	0.35	-0.7
2,161,061	-		EFB2_02003	0.35	-0.7
2,161,061	-		EFB2_02003	0.35	-2.0
2,161,061	-		EFB2_02003	0.35	+0.1
2,161,203	+		EFB2_02003	0.48	-0.7
2,161,203	+		EFB2_02003	0.48	-1.3
2,161,219	+		EFB2_02003	0.49	-2.1
2,161,219	+		EFB2_02003	0.49	+2.8
2,161,232	-		EFB2_02003	0.50	+0.8
2,161,275	+		EFB2_02003	0.54	+0.9
2,161,276	-		EFB2_02003	0.54	-1.6
2,161,276	-		EFB2_02003	0.54	+0.1
2,161,276	-		EFB2_02003	0.54	-1.3
2,161,362	+		EFB2_02003	0.62	+0.9
2,161,362	+		EFB2_02003	0.62	-0.9
2,161,363	-		EFB2_02003	0.62	+0.2
2,161,363	-		EFB2_02003	0.62	-1.6
2,161,363	-		EFB2_02003	0.62	+1.4
2,161,452	+		EFB2_02003	0.70	+0.7