Strain Fitness in Escherichia fergusonii Becca

Strain Fitness in Escherichia fergusonii Becca around EFB2_01905

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
				remove
2,017,749	-	EFB2_01903	0.50	-1.3
2,017,807	-	EFB2_01903	0.58	-1.5
2,017,828	+	EFB2_01903	0.60	-1.6
2,017,829	-	EFB2_01903	0.61	-2.6
2,017,831	-	EFB2_01903	0.61	-1.5
2,017,925	-	EFB2_01903	0.74	+0.1
2,018,092	-			-0.2
2,018,092	-			-0.9
2,018,102	-			-2.5
2,018,152	-	EFB2_01904	0.15	-0.9
2,018,152	-	EFB2_01904	0.15	+1.4
2,018,177	-	EFB2_01904	0.27	+1.1
2,018,177	-	EFB2_01904	0.27	+0.1
2,018,177	-	EFB2_01904	0.27	+0.2
2,018,181	+	EFB2_01904	0.29	-0.4
2,018,182	-	EFB2_01904	0.30	+0.7
2,018,252	+	EFB2_01904	0.62	+0.1
2,018,253	-	EFB2_01904	0.63	+4.8
2,018,281	+	EFB2_01904	0.76	-1.7
2,018,281	+	EFB2_01904	0.76	-1.7
2,018,281	+	EFB2_01904	0.76	+2.9
2,018,281	+	EFB2_01904	0.76	+0.5
2,018,281	+	EFB2_01904	0.76	-2.9
2,018,281	+	EFB2_01904	0.76	-0.5
2,018,282	-	EFB2_01904	0.77	+2.1
2,018,326	-			+0.5
2,018,326	-			-0.3
2,018,353	+			+0.7
2,018,353	+			-0.2
2,018,353	+			+0.1
2,018,353	+			-0.3
2,018,354	-			-0.5
2,018,354	-			+1.2
2,018,354	-			+0.2
2,018,362	-			-0.5
2,018,370	-			-1.1
2,018,370	-			-0.4
2,018,378	-			-3.2
2,018,385	+			-0.7
2,018,386	-			-1.5
2,018,386	-			+2.3
2,018,394	-			+1.2
2,018,394	-			-0.7
2,018,401	+			-2.2
2,018,409	+			-0.5
2,018,501	+			+0.2
2,018,511	+			+0.7
2,018,519	-			-2.3
2,018,527	+			-0.8
2,018,527	+			-1.3
2,018,527	+			-0.4
2,018,527	+			+0.2
2,018,527	+			+2.3
2,018,527	+			+1.4
2,018,527	+			+2.6
2,018,527	+			-2.0
2,018,527	+			+1.1
2,018,528	-			-0.3
2,018,528	-			-1.8
2,018,528	-			-0.2
2,018,528	-			-1.6
2,018,528	-			-0.0
2,018,528	-			-1.3
2,018,528	-			-0.8
2,018,528	-			-0.5
2,018,528	-			-1.1
2,018,531	+			+0.7
2,018,531	+			+1.8
2,018,543	+			-0.3
2,018,543	+			+0.2
2,018,645	+			+0.7
2,018,651	+			-0.7
2,018,652	-			-0.4
2,018,654	-			+1.3
2,018,659	+			-1.7
2,018,666	+			-2.2
2,018,676	+			-0.9
2,018,699	+			-2.3
2,018,704	+			+0.8
2,018,717	+			+1.3
2,018,736	+			+0.1
2,018,736	+			-1.7
2,018,737	-			-1.5
2,018,737	-			+1.4
2,018,758	-			-1.8
2,018,778	+			+1.3
2,018,779	-			-1.9
2,018,781	+			-3.3
2,018,781	+			-0.0
2,018,782	-			-0.8
2,018,796	+			+1.1
2,018,866	-			-0.2
2,018,869	+			-0.6
2,018,869	+			+0.3
2,018,869	+			-1.4
2,018,870	-			+1.4
2,018,870	-			-0.9
2,018,906	+			+0.2
2,018,907	-			-3.3
2,018,942	+			+0.2
2,018,974	+			-0.7
2,018,976	+			-0.6
2,018,976	+			-0.7
2,018,977	-			+0.5
2,019,034	-			-0.7
2,019,034	-			+0.8
2,019,035	+			+0.4
2,019,035	+			+1.4
2,019,035	+			-1.1
2,019,035	+			-0.9
2,019,035	+			+0.8
2,019,036	-			+1.4
2,019,036	-			-0.6
2,019,036	-			-1.9
2,019,036	-			-0.5
2,019,036	-			+1.8
2,019,037	+			-0.5
2,019,037	+			-2.3
2,019,037	+			+0.4
2,019,037	+			-0.1
2,019,037	+			-2.5
2,019,037	+			+1.1
2,019,037	+			+2.1
2,019,037	+			+1.1
2,019,037	+			+0.4
2,019,037	+			-0.8
2,019,037	+			+0.5
2,019,038	-			+1.5
2,019,038	-			+1.3
2,019,038	-			-0.0
2,019,038	-			+0.2
2,019,038	-			-0.2
2,019,038	-			-0.3
2,019,038	-			-0.2
2,019,038	-			-1.6
2,019,038	-			-2.1
2,019,038	-			+0.6
2,019,074	+			+0.7
2,019,081	+			-1.3
2,019,093	+			+2.1
2,019,093	+			+0.3
2,019,129	+			+0.8
2,019,129	+			+0.1
2,019,130	-			+1.2
2,019,130	-			+1.5
2,019,131	+			+2.3
2,019,132	-			+0.6
2,019,147	-			-1.6
2,019,158	+			-1.0
2,019,159	-			+0.8
2,019,199	+			+1.0
2,019,231	+			+1.3
2,019,231	+			-1.3
2,019,232	-			+0.7
2,019,233	+			-0.7
2,019,233	+			-0.3
2,019,233	+			+0.3
2,019,233	+			-0.7
2,019,233	+			-0.0
2,019,234	-			-0.8
2,019,234	-			+1.2
2,019,236	+			-0.3
2,019,236	+			-1.1
2,019,236	+			-0.7
2,019,236	+			-2.6
2,019,236	+			+0.2
2,019,236	+			-0.7
2,019,237	-			-3.3
2,019,237	-			+1.8
2,019,237	-			+1.4
2,019,237	-			+0.4
2,019,237	-			+1.2
2,019,241	+			-0.3
2,019,241	+			+0.0
2,019,241	+			-0.5
2,019,241	+			+0.0
2,019,242	-			-0.3
2,019,242	-			-1.1
2,019,242	-			-2.0
2,019,242	-			-1.6
2,019,242	-			+1.1
2,019,249	+			-0.3
2,019,249	+			+0.1
2,019,249	+			+0.2
2,019,249	+			-2.3
2,019,249	+			-1.5
2,019,249	+			-1.1
2,019,249	+			-0.7
2,019,249	+			-0.0
2,019,249	+			+1.4
2,019,250	-			-1.9
2,019,250	-			-3.2
2,019,272	+			-1.9
2,019,285	+			+0.6
2,019,304	+			-2.0
2,019,305	-			-1.4
2,019,305	-			-1.3
2,019,374	+			+1.6
2,019,374	+			-1.8
2,019,374	+			-0.3
2,019,374	+			-1.8
2,019,374	+			-2.3
2,019,374	+			+2.1
2,019,375	-			-1.1
2,019,415	+			-1.4
2,019,415	+			+0.2
2,019,416	-			-1.3
2,019,416	-			-2.3
2,019,427	+			-2.9
2,019,427	+			-0.3
2,019,427	+			+0.3
2,019,427	+			-0.2
2,019,427	+			+0.9
2,019,428	-			+0.1
2,019,428	-			+0.0
2,019,428	-			-1.1
2,019,428	-			-1.5
2,019,453	+			+2.1
2,019,453	+			-1.4
2,019,453	+			-1.6
2,019,454	-			-2.8
2,019,472	+			-0.6
2,019,472	+			+0.1
2,019,473	-			+1.7
2,019,483	+			+0.9
2,019,483	+			-1.7
2,019,483	+			+0.7
2,019,484	-			+0.1
2,019,484	-			+2.9
2,019,484	-			+0.7
2,019,505	+			-0.7
2,019,505	+			-2.3
2,019,505	+			-2.6
2,019,506	-			+2.1
2,019,506	-			+0.1
2,019,506	-			+0.2
2,019,506	-			+1.8
2,019,506	-			+0.1
2,019,511	-			-0.1
2,019,563	+			-0.3
2,019,563	+			-0.1
2,019,572	+			-0.1
2,019,573	-			-0.2
2,019,573	-			+0.5
2,019,589	-			+1.1
2,019,589	-			-2.5
2,019,589	-			+1.3
2,019,602	+			+0.6
2,019,602	+			-1.4
2,019,610	+			+0.2
2,019,610	+			-0.7
2,019,610	+			-1.1
2,019,610	+			+0.8
2,019,610	+			+0.2
2,019,610	+			+1.8
2,019,610	+			-1.3
2,019,610	+			+2.1
2,019,610	+			-1.8
2,019,610	+			+0.9
2,019,610	+			+0.4
2,019,610	+			+0.3
2,019,611	-			-1.6
2,019,611	-			+0.6
2,019,611	-			-1.5
2,019,611	-			-0.6
2,019,611	-			-0.4
2,019,611	-			+0.2
2,019,611	-			+1.4
2,019,611	-			+0.8
2,019,611	-			-0.3
2,019,611	-			+2.3
2,019,611	-			-1.3
2,019,611	-			+0.8
2,019,632	+			-1.3
2,019,632	+			-3.1
2,019,632	+			+0.5
2,019,632	+			+0.7
2,019,633	-			-4.2
2,019,633	-			-0.5
2,019,646	+			+1.3
2,019,646	+			-0.4
2,019,646	+			+1.7
2,019,646	+			+0.1
2,019,646	+			+0.1
2,019,646	+			+1.4
2,019,646	+			-0.7
2,019,646	+			+0.7
2,019,646	+			-1.0
2,019,646	+			+2.1
2,019,646	+			-0.9
2,019,646	+			-1.3
2,019,646	+			+1.1
2,019,646	+			+0.1
2,019,647	-			+0.1
2,019,647	-			-1.5
2,019,647	-			+0.5
2,019,647	-			-1.5
2,019,647	-			+2.1
2,019,647	-			-1.5
2,019,647	-			+1.4
2,019,662	+			-1.3
2,019,662	+			-0.6
2,019,677	+			+0.1
2,019,677	+			+0.4
2,019,678	-			+2.1
2,019,690	+			+1.6
2,019,690	+			+0.1
2,019,691	-			-0.7
2,019,691	-			-0.8
2,019,692	+			-1.6
2,019,692	+			+0.4
2,019,693	-			-2.1
2,019,705	+			-1.2
2,019,705	+			-0.3
2,019,706	-			-1.5
2,019,707	+			+0.7
2,019,707	+			+0.1
2,019,707	+			-1.3
2,019,707	+			-0.2
2,019,707	+			-1.0
2,019,707	+			-0.2
2,019,707	+			+1.4
2,019,707	+			-1.1
2,019,707	+			-0.5
2,019,707	+			-0.2
2,019,707	+			+1.2
2,019,707	+			-0.4
2,019,707	+			+1.1
2,019,707	+			-0.3
2,019,707	+			+2.7
2,019,708	-			+0.1
2,019,708	-			+0.8
2,019,708	-			+0.5
2,019,708	-			+1.6
2,019,708	-			-0.5
2,019,708	-			+0.2
2,019,719	+	EFB2_01905	0.10	+0.3
2,019,719	+	EFB2_01905	0.10	+0.6
2,019,719	+	EFB2_01905	0.10	+0.3
2,019,719	+	EFB2_01905	0.10	+1.1
2,019,720	-	EFB2_01905	0.10	-0.3
2,019,720	-	EFB2_01905	0.10	-1.1
2,019,725	+	EFB2_01905	0.10	-1.5
2,019,725	+	EFB2_01905	0.10	+0.0
2,019,726	-	EFB2_01905	0.10	-0.2
2,019,729	+	EFB2_01905	0.10	-0.4
2,019,729	+	EFB2_01905	0.10	+0.8
2,019,729	+	EFB2_01905	0.10	+0.0
2,019,729	+	EFB2_01905	0.10	+0.5
2,019,729	+	EFB2_01905	0.10	+2.5
2,019,729	+	EFB2_01905	0.10	+0.0
2,019,729	+	EFB2_01905	0.10	+0.9
2,019,729	+	EFB2_01905	0.10	-2.6
2,019,729	+	EFB2_01905	0.10	+2.1
2,019,729	+	EFB2_01905	0.10	+0.3
2,019,729	+	EFB2_01905	0.10	+0.3
2,019,729	+	EFB2_01905	0.10	-0.9
2,019,730	-	EFB2_01905	0.10	-1.8
2,019,730	-	EFB2_01905	0.10	-1.1
2,019,730	-	EFB2_01905	0.10	+0.2
2,019,730	-	EFB2_01905	0.10	+0.3
2,019,730	-	EFB2_01905	0.10	+0.9
2,019,732	+	EFB2_01905	0.10	-1.3
2,019,732	+	EFB2_01905	0.10	-2.8
2,019,732	+	EFB2_01905	0.10	+0.3
2,019,733	-	EFB2_01905	0.10	+1.2
2,019,733	-	EFB2_01905	0.10	+1.7
2,019,785	+	EFB2_01905	0.11	+1.0
2,019,785	+	EFB2_01905	0.11	+1.3
2,019,785	+	EFB2_01905	0.11	+0.8
2,019,785	+	EFB2_01905	0.11	+0.7
2,019,785	+	EFB2_01905	0.11	-0.1
2,019,785	+	EFB2_01905	0.11	+1.8
2,019,785	+	EFB2_01905	0.11	+0.4
2,019,785	+	EFB2_01905	0.11	+1.7
2,019,785	+	EFB2_01905	0.11	+0.4
2,019,786	-	EFB2_01905	0.11	-0.4
2,019,786	-	EFB2_01905	0.11	-0.3
2,019,786	-	EFB2_01905	0.11	-1.4
2,019,786	-	EFB2_01905	0.11	+0.2
2,019,786	-	EFB2_01905	0.11	+1.1
2,019,786	-	EFB2_01905	0.11	-0.7
2,019,786	-	EFB2_01905	0.11	+0.8
2,019,786	-	EFB2_01905	0.11	-1.4
2,019,786	-	EFB2_01905	0.11	-2.6
2,019,786	-	EFB2_01905	0.11	-2.6
2,019,786	-	EFB2_01905	0.11	-1.3
2,019,792	+	EFB2_01905	0.11	+1.2
2,019,792	+	EFB2_01905	0.11	-0.6
2,019,792	+	EFB2_01905	0.11	+0.5
2,019,792	+	EFB2_01905	0.11	-0.9
2,019,792	+	EFB2_01905	0.11	+2.7
2,019,792	+	EFB2_01905	0.11	+1.8
2,019,792	+	EFB2_01905	0.11	+1.6
2,019,792	+	EFB2_01905	0.11	+0.9
2,019,792	+	EFB2_01905	0.11	-2.7
2,019,792	+	EFB2_01905	0.11	-0.4
2,019,792	+	EFB2_01905	0.11	+0.2
2,019,793	-	EFB2_01905	0.11	+1.1
2,019,793	-	EFB2_01905	0.11	+0.3
2,019,793	-	EFB2_01905	0.11	+1.1
2,019,793	-	EFB2_01905	0.11	-2.2
2,019,793	-	EFB2_01905	0.11	-1.5
2,019,793	-	EFB2_01905	0.11	+0.5
2,019,793	-	EFB2_01905	0.11	+0.2
2,019,793	-	EFB2_01905	0.11	-0.3
2,019,793	-	EFB2_01905	0.11	+0.8
2,019,793	-	EFB2_01905	0.11	+1.1
2,019,793	-	EFB2_01905	0.11	+0.5
2,019,793	-	EFB2_01905	0.11	+0.6
2,019,793	-	EFB2_01905	0.11	+0.7
2,019,793	-	EFB2_01905	0.11	-0.8
2,019,793	-	EFB2_01905	0.11	+0.7
2,019,793	-	EFB2_01905	0.11	+0.7
2,019,806	+	EFB2_01905	0.11	+2.1
2,019,806	+	EFB2_01905	0.11	+0.2
2,019,806	+	EFB2_01905	0.11	-1.5
2,019,806	+	EFB2_01905	0.11	-0.8
2,019,807	-	EFB2_01905	0.11	-1.4
2,019,809	+	EFB2_01905	0.11	-0.5
2,019,809	+	EFB2_01905	0.11	-1.1
2,019,809	+	EFB2_01905	0.11	+2.1
2,019,809	+	EFB2_01905	0.11	-1.0
2,019,809	+	EFB2_01905	0.11	+0.1
2,019,809	+	EFB2_01905	0.11	+0.5
2,019,809	+	EFB2_01905	0.11	-1.8
2,019,809	+	EFB2_01905	0.11	+1.5
2,019,809	+	EFB2_01905	0.11	+0.4
2,019,809	+	EFB2_01905	0.11	+0.8
2,019,809	+	EFB2_01905	0.11	+0.3
2,019,809	+	EFB2_01905	0.11	-1.5
2,019,809	+	EFB2_01905	0.11	+0.1
2,019,809	+	EFB2_01905	0.11	+1.1
2,019,809	+	EFB2_01905	0.11	-0.8
2,019,809	+	EFB2_01905	0.11	+0.5
2,019,809	+	EFB2_01905	0.11	-1.1
2,019,810	-	EFB2_01905	0.11	-2.0
2,019,810	-	EFB2_01905	0.11	+0.4
2,019,810	-	EFB2_01905	0.11	+0.7
2,019,810	-	EFB2_01905	0.11	+1.5
2,019,810	-	EFB2_01905	0.11	-1.3
2,019,810	-	EFB2_01905	0.11	-2.3
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2,028,935	-	EFB2_01906	0.20	+0.3
2,028,935	-	EFB2_01906	0.20	-2.0
2,028,941	+	EFB2_01906	0.20	-0.3
2,028,941	+	EFB2_01906	0.20	-2.0
2,028,941	+	EFB2_01906	0.20	-1.2
2,028,942	-	EFB2_01906	0.20	+0.1
2,028,942	-	EFB2_01906	0.20	+0.6
2,028,942	-	EFB2_01906	0.20	+0.8
2,028,942	-	EFB2_01906	0.20	-0.1
2,028,942	-	EFB2_01906	0.20	-0.3
2,028,942	-	EFB2_01906	0.20	-1.9
2,028,977	-	EFB2_01906	0.22	+1.0
2,028,977	-	EFB2_01906	0.22	+0.1
2,029,033	+	EFB2_01906	0.24	+0.3
2,029,033	+	EFB2_01906	0.24	-2.1
2,029,033	+	EFB2_01906	0.24	-0.0
2,029,033	+	EFB2_01906	0.24	-0.6
2,029,033	+	EFB2_01906	0.24	+1.1
2,029,034	-	EFB2_01906	0.24	-1.2
2,029,034	-	EFB2_01906	0.24	-1.6
2,029,034	-	EFB2_01906	0.24	-0.5
2,029,034	-	EFB2_01906	0.24	-0.5
2,029,034	-	EFB2_01906	0.24	+0.5
2,029,061	+	EFB2_01906	0.25	+0.1
2,029,061	+	EFB2_01906	0.25	+0.8
2,029,061	+	EFB2_01906	0.25	+0.1
2,029,062	-	EFB2_01906	0.25	-0.3
2,029,062	-	EFB2_01906	0.25	+0.7
2,029,062	-	EFB2_01906	0.25	-0.1
2,029,062	-	EFB2_01906	0.25	+0.7
2,029,062	-	EFB2_01906	0.25	-0.4
2,029,208	+	EFB2_01906	0.31	+0.6
2,029,208	+	EFB2_01906	0.31	-0.7
2,029,208	+	EFB2_01906	0.31	-2.1
2,029,208	+	EFB2_01906	0.31	+0.8
2,029,208	+	EFB2_01906	0.31	-2.6
2,029,208	+	EFB2_01906	0.31	-0.5
2,029,208	+	EFB2_01906	0.31	-1.1
2,029,208	+	EFB2_01906	0.31	+0.6
2,029,208	+	EFB2_01906	0.31	+0.4
2,029,208	+	EFB2_01906	0.31	-0.0
2,029,208	+	EFB2_01906	0.31	-1.6
2,029,208	+	EFB2_01906	0.31	-0.1
2,029,208	+	EFB2_01906	0.31	-1.3
2,029,208	+	EFB2_01906	0.31	-0.6
2,029,208	+	EFB2_01906	0.31	+0.0
2,029,209	-	EFB2_01906	0.31	-0.9
2,029,209	-	EFB2_01906	0.31	+2.6
2,029,209	-	EFB2_01906	0.31	-1.5
2,029,209	-	EFB2_01906	0.31	-0.5
2,029,209	-	EFB2_01906	0.31	-2.0
2,029,209	-	EFB2_01906	0.31	+1.1
2,029,209	-	EFB2_01906	0.31	+0.5
2,029,209	-	EFB2_01906	0.31	-0.3
2,029,209	-	EFB2_01906	0.31	+1.4
2,029,209	-	EFB2_01906	0.31	-0.3
2,029,209	-	EFB2_01906	0.31	-0.9
2,029,247	-	EFB2_01906	0.32	-0.3
2,029,326	+	EFB2_01906	0.35	+0.7
2,029,326	+	EFB2_01906	0.35	+0.6
2,029,327	-	EFB2_01906	0.35	-0.9
2,029,327	-	EFB2_01906	0.35	-0.9
2,029,346	+	EFB2_01906	0.36	+0.5
2,029,346	+	EFB2_01906	0.36	+1.3

Or see this region's nucleotide sequence