Strain Fitness in Escherichia fergusonii Becca around EFB2_01523

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,596,451	+				-0.3
1,596,451	+				+0.9
1,596,452	-				+2.7
1,596,466	+				+1.8
1,596,467	-				-2.3
1,596,467	-				+0.4
1,596,548	+				-1.3
1,596,548	+				+0.5
1,596,548	+				-0.8
1,596,548	+				-1.3
1,596,549	-				-0.7
1,596,549	-				-3.0
1,596,549	-				-2.9
1,596,557	+				+0.8
1,596,557	+				+2.1
1,596,558	-				+1.2
1,596,558	-				-0.4
1,596,621	+				+0.5
1,596,621	+				+1.7
1,596,621	+				-0.3
1,596,621	+				-0.2
1,596,622	-				-0.3
1,596,622	-				+0.1
1,596,622	-				+0.3
1,596,649	+				-1.4
1,596,649	+				+0.5
1,596,649	+				-0.8
1,596,650	-				-0.4
1,596,651	+				-0.2
1,596,651	+				-2.4
1,596,651	+				+0.2
1,596,651	+				-1.8
1,596,651	+				-0.4
1,596,651	+				-0.0
1,596,651	+				+3.1
1,596,652	-				-1.8
1,596,652	-				-0.2
1,596,652	-				-0.8
1,596,656	+				+0.2
1,596,657	-				-2.5
1,596,699	+				+2.0
1,596,699	+				-0.2
1,596,700	-				-0.5
1,596,771	+		EFB2_01522	0.17	-0.6
1,596,795	+		EFB2_01522	0.20	+1.3
1,596,796	-		EFB2_01522	0.20	+1.5
1,596,817	+		EFB2_01522	0.23	+0.2
1,596,817	+		EFB2_01522	0.23	-0.1
1,596,817	+		EFB2_01522	0.23	+0.1
1,596,817	+		EFB2_01522	0.23	-3.2
1,596,817	+		EFB2_01522	0.23	-0.6
1,596,817	+		EFB2_01522	0.23	-0.4
1,596,817	+		EFB2_01522	0.23	-2.4
1,596,818	-		EFB2_01522	0.23	+1.4
1,596,818	-		EFB2_01522	0.23	+0.2
1,596,861	-		EFB2_01522	0.29	-0.1
1,596,897	+		EFB2_01522	0.34	+2.4
1,596,897	+		EFB2_01522	0.34	+0.8
1,596,906	+		EFB2_01522	0.35	+0.1
1,596,906	+		EFB2_01522	0.35	+0.2
1,596,907	-		EFB2_01522	0.35	+1.1
1,596,907	-		EFB2_01522	0.35	-0.1
1,596,907	-		EFB2_01522	0.35	-1.6
1,596,982	+		EFB2_01522	0.45	-1.1
1,596,982	+		EFB2_01522	0.45	+0.0
1,596,982	+		EFB2_01522	0.45	-2.0
1,596,983	-		EFB2_01522	0.45	+0.9
1,596,983	-		EFB2_01522	0.45	-1.9
1,596,983	-		EFB2_01522	0.45	-1.1
1,596,983	-		EFB2_01522	0.45	+0.2
1,596,985	+		EFB2_01522	0.45	-1.4
1,596,985	+		EFB2_01522	0.45	+1.1
1,596,985	+		EFB2_01522	0.45	+0.8
1,596,986	-		EFB2_01522	0.46	-0.3
1,596,986	-		EFB2_01522	0.46	+0.7
1,596,986	-		EFB2_01522	0.46	+0.4
1,596,986	-		EFB2_01522	0.46	+1.4
1,596,986	-		EFB2_01522	0.46	-1.7
1,596,986	-		EFB2_01522	0.46	+0.2
1,596,986	-		EFB2_01522	0.46	+1.1
1,596,986	-		EFB2_01522	0.46	-1.8
1,597,116	+		EFB2_01522	0.63	-2.1
1,597,116	+		EFB2_01522	0.63	+2.3
1,597,117	-		EFB2_01522	0.63	-2.7
1,597,147	+		EFB2_01522	0.67	+1.9
1,597,147	+		EFB2_01522	0.67	-0.2
1,597,147	+		EFB2_01522	0.67	+1.1
1,597,147	+		EFB2_01522	0.67	-1.7
1,597,147	+		EFB2_01522	0.67	-1.4
1,597,147	+		EFB2_01522	0.67	-0.1
1,597,147	+		EFB2_01522	0.67	+0.8
1,597,147	+		EFB2_01522	0.67	+0.1
1,597,147	+		EFB2_01522	0.67	-0.4
1,597,147	+		EFB2_01522	0.67	+0.0
1,597,148	-		EFB2_01522	0.67	-1.1
1,597,148	-		EFB2_01522	0.67	-0.1
1,597,148	-		EFB2_01522	0.67	+0.9
1,597,148	-		EFB2_01522	0.67	-0.6
1,597,148	-		EFB2_01522	0.67	+0.3
1,597,148	-		EFB2_01522	0.67	+0.6
1,597,148	-		EFB2_01522	0.67	-2.3
1,597,148	-		EFB2_01522	0.67	-1.2
1,597,148	-		EFB2_01522	0.67	+1.7
1,597,148	-		EFB2_01522	0.67	-1.9
1,597,148	-		EFB2_01522	0.67	-2.9
1,597,148	-		EFB2_01522	0.67	-0.1
1,597,148	-		EFB2_01522	0.67	-1.2
1,597,149	+		EFB2_01522	0.67	+1.7
1,597,149	+		EFB2_01522	0.67	-2.7
1,597,149	+		EFB2_01522	0.67	+1.2
1,597,149	+		EFB2_01522	0.67	+2.0
1,597,149	+		EFB2_01522	0.67	-2.0
1,597,149	+		EFB2_01522	0.67	-2.1
1,597,149	+		EFB2_01522	0.67	-0.3
1,597,150	-		EFB2_01522	0.67	+1.4
1,597,150	-		EFB2_01522	0.67	-1.9
1,597,150	-		EFB2_01522	0.67	+0.2
1,597,150	-		EFB2_01522	0.67	-2.3
1,597,150	-		EFB2_01522	0.67	-0.2
1,597,150	-		EFB2_01522	0.67	+0.3
1,597,230	+		EFB2_01522	0.78	-1.2
1,597,231	-		EFB2_01522	0.78	-1.0
1,597,268	+		EFB2_01522	0.83	-0.2
1,597,303	+		EFB2_01522	0.88	+0.4
1,597,303	+		EFB2_01522	0.88	+0.8
1,597,303	+		EFB2_01522	0.88	+0.7
1,597,303	+		EFB2_01522	0.88	-0.9
1,597,303	+		EFB2_01522	0.88	+2.0
1,597,303	+		EFB2_01522	0.88	-1.9
1,597,303	+		EFB2_01522	0.88	-0.8
1,597,303	+		EFB2_01522	0.88	-1.1
1,597,303	+		EFB2_01522	0.88	-0.1
1,597,303	+		EFB2_01522	0.88	+1.1
1,597,303	+		EFB2_01522	0.88	-2.1
1,597,303	+		EFB2_01522	0.88	+2.1
1,597,303	+		EFB2_01522	0.88	-0.9
1,597,303	+		EFB2_01522	0.88	+0.2
1,597,303	+		EFB2_01522	0.88	-0.8
1,597,303	+		EFB2_01522	0.88	-1.9
1,597,303	+		EFB2_01522	0.88	-1.4
1,597,303	+		EFB2_01522	0.88	+2.1
1,597,303	+		EFB2_01522	0.88	+2.7
1,597,303	+		EFB2_01522	0.88	-2.5
1,597,304	-		EFB2_01522	0.88	-0.5
1,597,304	-		EFB2_01522	0.88	-0.6
1,597,304	-		EFB2_01522	0.88	-2.9
1,597,304	-		EFB2_01522	0.88	-1.2
1,597,304	-		EFB2_01522	0.88	-0.7
1,597,304	-		EFB2_01522	0.88	-3.3
1,597,304	-		EFB2_01522	0.88	-0.7
1,597,304	-		EFB2_01522	0.88	-0.2
1,597,304	-		EFB2_01522	0.88	+1.1
1,597,304	-		EFB2_01522	0.88	+0.8
1,597,304	-		EFB2_01522	0.88	-0.3
1,597,304	-		EFB2_01522	0.88	-1.9
1,597,304	-		EFB2_01522	0.88	-0.1
1,597,304	-		EFB2_01522	0.88	-0.0
1,597,304	-		EFB2_01522	0.88	+0.8
1,597,304	-		EFB2_01522	0.88	-0.6
1,597,304	-		EFB2_01522	0.88	+0.1
1,597,304	-		EFB2_01522	0.88	-1.2
1,597,304	-		EFB2_01522	0.88	+0.5
1,597,304	-		EFB2_01522	0.88	+0.6
1,597,304	-		EFB2_01522	0.88	-0.2
1,597,304	-		EFB2_01522	0.88	-0.7
1,597,304	-		EFB2_01522	0.88	-3.2
1,597,304	-		EFB2_01522	0.88	+0.3
1,597,304	-		EFB2_01522	0.88	+0.6
1,597,306	-		EFB2_01522	0.88	-0.7
1,597,306	-		EFB2_01522	0.88	+0.3
1,597,315	+		EFB2_01522	0.89	-0.4
1,597,315	+		EFB2_01522	0.89	+0.5
1,597,316	-		EFB2_01522	0.89	+1.7
1,597,447	-				-2.5
1,597,582	+		EFB2_01523	0.34	-1.8
1,597,583	-		EFB2_01523	0.34	+0.7
1,597,583	-		EFB2_01523	0.34	-1.1
1,597,585	+		EFB2_01523	0.34	+3.9
1,597,585	+		EFB2_01523	0.34	-1.5
1,597,585	+		EFB2_01523	0.34	+0.0
1,597,585	+		EFB2_01523	0.34	-1.5
1,597,585	+		EFB2_01523	0.34	+1.3
1,597,585	+		EFB2_01523	0.34	-0.0
1,597,586	-		EFB2_01523	0.35	-1.5
1,597,607	+		EFB2_01523	0.39	-1.8
1,597,607	+		EFB2_01523	0.39	+3.0
1,597,607	+		EFB2_01523	0.39	-1.8
1,597,607	+		EFB2_01523	0.39	-0.1
1,597,607	+		EFB2_01523	0.39	+0.9
1,597,607	+		EFB2_01523	0.39	+0.7
1,597,608	-		EFB2_01523	0.39	-0.5
1,597,608	-		EFB2_01523	0.39	+1.3
1,597,608	-		EFB2_01523	0.39	-2.1
1,597,608	-		EFB2_01523	0.39	+0.3
1,597,625	+		EFB2_01523	0.42	-1.0
1,597,625	+		EFB2_01523	0.42	-0.2
1,597,626	-		EFB2_01523	0.42	-1.9
1,597,626	-		EFB2_01523	0.42	+0.6
1,597,626	-		EFB2_01523	0.42	+0.8
1,597,626	-		EFB2_01523	0.42	-0.4
1,597,745	-		EFB2_01523	0.66	-2.8
1,597,784	-		EFB2_01523	0.74	-0.2
1,597,784	-		EFB2_01523	0.74	+1.1
1,597,789	+		EFB2_01523	0.75	+0.6
1,597,789	+		EFB2_01523	0.75	-0.1
1,597,789	+		EFB2_01523	0.75	+0.7
1,597,789	+		EFB2_01523	0.75	+2.6
1,597,789	+		EFB2_01523	0.75	-0.2
1,597,789	+		EFB2_01523	0.75	-0.5
1,597,789	+		EFB2_01523	0.75	+0.9
1,597,789	+		EFB2_01523	0.75	+0.9
1,597,789	+		EFB2_01523	0.75	+0.7
1,597,789	+		EFB2_01523	0.75	+0.4
1,597,789	+		EFB2_01523	0.75	-0.9
1,597,790	-		EFB2_01523	0.75	-1.5
1,597,790	-		EFB2_01523	0.75	-1.0
1,597,790	-		EFB2_01523	0.75	+1.0
1,597,790	-		EFB2_01523	0.75	+0.5
1,597,790	-		EFB2_01523	0.75	+0.6
1,597,790	-		EFB2_01523	0.75	+0.1
1,597,790	-		EFB2_01523	0.75	+0.4
1,597,790	-		EFB2_01523	0.75	+0.2
1,597,790	-		EFB2_01523	0.75	+0.8
1,597,790	-		EFB2_01523	0.75	+1.8
1,597,790	-		EFB2_01523	0.75	-1.9
1,597,813	+		EFB2_01523	0.80	+1.1
1,597,813	+		EFB2_01523	0.80	+0.2
1,597,813	+		EFB2_01523	0.80	+0.4
1,597,813	+		EFB2_01523	0.80	+1.1
1,597,813	+		EFB2_01523	0.80	-0.9
1,597,814	-		EFB2_01523	0.80	-1.1
1,597,814	-		EFB2_01523	0.80	+1.6
1,597,814	-		EFB2_01523	0.80	-0.6
1,597,879	+				+0.6
1,597,879	+				-1.5
1,597,907	+				+0.2
1,597,907	+				-1.6
1,597,907	+				+0.5
1,597,907	+				+0.8
1,597,908	-				-1.6
1,597,908	-				-0.6
1,597,908	-				-2.9
1,597,934	+				-2.1
1,597,934	+				+1.0
1,597,934	+				-2.2
1,597,934	+				+0.1
1,597,934	+				+0.2
1,597,934	+				+0.4
1,597,934	+				-0.9
1,597,934	+				-2.1
1,597,934	+				+0.3
1,597,934	+				+1.9
1,597,935	-				-2.0
1,597,935	-				-2.3
1,597,935	-				-0.5
1,597,935	-				+0.2
1,597,935	-				+0.5
1,597,935	-				+0.3
1,597,935	-				-0.3
1,597,935	-				-0.9
1,597,935	-				-0.0
1,597,935	-				+1.0
1,597,935	-				-0.1
1,597,935	-				-1.7
1,597,935	-				-1.1
1,597,935	-				-0.6
1,597,935	-				-0.2
1,597,935	-				-1.7
1,597,935	-				+1.2
1,597,935	-				-0.2
1,597,935	-				-1.1
1,597,935	-				-0.3
1,597,935	-				-1.1
1,597,939	+				+0.7
1,597,971	+		EFB2_01524	0.12	-1.3
1,597,980	+		EFB2_01524	0.14	+0.4
1,597,981	-		EFB2_01524	0.14	+2.1
1,598,016	+		EFB2_01524	0.22	+0.1
1,598,016	+		EFB2_01524	0.22	+0.2
1,598,016	+		EFB2_01524	0.22	-2.8
1,598,016	+		EFB2_01524	0.22	+0.5
1,598,017	-		EFB2_01524	0.22	-0.4
1,598,017	-		EFB2_01524	0.22	+0.4
1,598,017	-		EFB2_01524	0.22	+0.0
1,598,017	-		EFB2_01524	0.22	+1.4
1,598,017	-		EFB2_01524	0.22	-3.2
1,598,017	-		EFB2_01524	0.22	+2.3
1,598,019	+		EFB2_01524	0.22	-1.5
1,598,019	+		EFB2_01524	0.22	-0.7
1,598,019	+		EFB2_01524	0.22	-0.7
1,598,019	+		EFB2_01524	0.22	-0.3
1,598,019	+		EFB2_01524	0.22	+0.5
1,598,020	-		EFB2_01524	0.23	-0.3
1,598,020	-		EFB2_01524	0.23	+1.9
1,598,020	-		EFB2_01524	0.23	-0.2
1,598,020	-		EFB2_01524	0.23	+0.6
1,598,020	-		EFB2_01524	0.23	-0.2
1,598,031	+		EFB2_01524	0.25	-0.9
1,598,031	+		EFB2_01524	0.25	-0.2
1,598,031	+		EFB2_01524	0.25	-0.7
1,598,031	+		EFB2_01524	0.25	-0.3
1,598,031	+		EFB2_01524	0.25	+0.3
1,598,031	+		EFB2_01524	0.25	+1.7
1,598,031	+		EFB2_01524	0.25	-0.1
1,598,032	-		EFB2_01524	0.25	+0.1
1,598,032	-		EFB2_01524	0.25	+1.1
1,598,032	-		EFB2_01524	0.25	-2.1
1,598,077	-		EFB2_01524	0.34	+0.1
1,598,086	-		EFB2_01524	0.36	-1.6
1,598,086	-		EFB2_01524	0.36	+0.5
1,598,086	-		EFB2_01524	0.36	-1.1
1,598,107	+		EFB2_01524	0.41	-1.9
1,598,107	+		EFB2_01524	0.41	-0.0
1,598,107	+		EFB2_01524	0.41	+0.5
1,598,107	+		EFB2_01524	0.41	+0.3
1,598,107	+		EFB2_01524	0.41	-1.2
1,598,107	+		EFB2_01524	0.41	+1.8
1,598,107	+		EFB2_01524	0.41	+0.1
1,598,107	+		EFB2_01524	0.41	-0.4
1,598,107	+		EFB2_01524	0.41	-2.6
1,598,107	+		EFB2_01524	0.41	-0.5
1,598,107	+		EFB2_01524	0.41	-3.3
1,598,108	-		EFB2_01524	0.41	-1.5
1,598,108	-		EFB2_01524	0.41	-0.4
1,598,108	-		EFB2_01524	0.41	+1.1
1,598,108	-		EFB2_01524	0.41	-0.0
1,598,108	-		EFB2_01524	0.41	+0.2
1,598,108	-		EFB2_01524	0.41	+0.5
1,598,108	-		EFB2_01524	0.41	+0.4
1,598,108	-		EFB2_01524	0.41	+1.9
1,598,108	-		EFB2_01524	0.41	+0.2
1,598,108	-		EFB2_01524	0.41	-0.5
1,598,108	-		EFB2_01524	0.41	-2.0
1,598,185	+		EFB2_01524	0.57	+0.0
1,598,186	-		EFB2_01524	0.57	+1.4
1,598,186	-		EFB2_01524	0.57	+0.1
1,598,186	-		EFB2_01524	0.57	-0.9
1,598,234	+		EFB2_01524	0.67	+1.3
1,598,234	+		EFB2_01524	0.67	-0.5
1,598,234	+		EFB2_01524	0.67	-1.4
1,598,234	+		EFB2_01524	0.67	+0.9
1,598,235	-		EFB2_01524	0.67	-0.4
1,598,235	-		EFB2_01524	0.67	+0.4
1,598,235	-		EFB2_01524	0.67	+1.7
1,598,362	+				+1.3
1,598,363	-				-0.6
1,598,363	-				-2.4
1,598,372	+				+1.8
1,598,372	+				+1.1
1,598,372	+				-0.5
1,598,372	+				-2.2
1,598,373	-				+2.5
1,598,373	-				-0.9
1,598,373	-				-1.4
1,598,383	+				+1.5
1,598,383	+				+2.8
1,598,383	+				-0.4
1,598,395	+				-0.5
1,598,395	+				-0.7
1,598,396	-				+0.6
1,598,396	-				+1.2
1,598,396	-				-3.4
1,598,405	-				-0.5
1,598,422	+				-0.8
1,598,423	-				+1.0
1,598,423	-				-2.8
1,598,478	+		EFB2_01525	0.17	+0.1
1,598,488	+		EFB2_01525	0.19	+1.8
1,598,488	+		EFB2_01525	0.19	+1.2
1,598,489	-		EFB2_01525	0.19	+0.6
1,598,496	-		EFB2_01525	0.20	+1.2
1,598,640	+		EFB2_01525	0.48	-2.4
1,598,640	+		EFB2_01525	0.48	-2.5
1,598,641	-		EFB2_01525	0.48	-2.2
1,598,777	+		EFB2_01525	0.74	+0.3
1,598,777	+		EFB2_01525	0.74	+1.8
1,598,777	+		EFB2_01525	0.74	+0.5
1,598,813	+		EFB2_01525	0.80	+1.0
1,598,813	+		EFB2_01525	0.80	-0.9
1,598,814	-		EFB2_01525	0.81	+1.0
1,598,814	-		EFB2_01525	0.81	+0.9
1,598,814	-		EFB2_01525	0.81	-1.1
1,598,829	-		EFB2_01525	0.84	-2.9
1,598,913	+				+1.1
1,598,913	+				-0.1
1,598,913	+				+1.3
1,598,913	+				-1.4
1,598,913	+				+0.8
1,598,913	+				-2.1
1,598,913	+				-1.1
1,598,913	+				-0.0
1,598,913	+				+0.5
1,598,913	+				-0.2
1,598,914	-				+0.5
1,598,914	-				+1.8
1,598,914	-				+1.6
1,598,914	-				-1.7
1,598,914	-				-3.1
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1,598,914	-				-0.3
1,598,914	-				-0.0
1,598,914	-				-0.8
1,598,914	-				-1.9
1,598,914	-				+0.3
1,598,914	-				-0.2