Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07670

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntccoN and ccoO are separated by 127 nucleotidesccoO and OKGIIK_07665 overlap by 4 nucleotidesOKGIIK_07665 and ccoP overlap by 4 nucleotidesccoP and OKGIIK_07675 overlap by 17 nucleotidesOKGIIK_07675 and OKGIIK_07680 overlap by 4 nucleotides OKGIIK_07655: ccoN - cytochrome-c oxidase, cbb3-type subunit I, at 1,693,313 to 1,694,779 ccoN OKGIIK_07660: ccoO - cytochrome-c oxidase, cbb3-type subunit II, at 1,694,907 to 1,695,557 ccoO OKGIIK_07665: OKGIIK_07665 - Cytochrome-c oxidase, at 1,695,554 to 1,695,727 _07665 OKGIIK_07670: ccoP - cytochrome-c oxidase, cbb3-type subunit III, at 1,695,724 to 1,696,635 ccoP OKGIIK_07675: OKGIIK_07675 - hypothetical protein, at 1,696,619 to 1,696,855 _07675 OKGIIK_07680: OKGIIK_07680 - ATPase P, at 1,696,852 to 1,699,110 _07680 Position (kb) 1695 1696 1697Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1694.894 kb on + strandat 1695.057 kb on + strand, within ccoOat 1695.058 kb on - strand, within ccoOat 1695.192 kb on + strand, within ccoOat 1695.193 kb on - strand, within ccoOat 1695.644 kb on + strand, within OKGIIK_07665at 1695.793 kb on + strandat 1696.072 kb on + strand, within ccoPat 1696.073 kb on - strand, within ccoPat 1696.328 kb on - strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.588 kb on + strandat 1696.589 kb on - strandat 1696.594 kb on + strandat 1696.780 kb on + strand, within OKGIIK_07675at 1696.780 kb on + strand, within OKGIIK_07675at 1697.228 kb on - strand, within OKGIIK_07680at 1697.242 kb on + strand, within OKGIIK_07680

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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1,694,894 + +0.3
1,694,894 + +0.1
1,694,894 + +0.3
1,694,894 + +0.4
1,694,894 + +0.4
1,695,057 + ccoO OKGIIK_07660 0.23 +0.7
1,695,058 - ccoO OKGIIK_07660 0.23 +0.5
1,695,192 + ccoO OKGIIK_07660 0.44 +1.4
1,695,193 - ccoO OKGIIK_07660 0.44 -0.8
1,695,644 + OKGIIK_07665 0.52 -1.2
1,695,793 + -0.8
1,696,072 + ccoP OKGIIK_07670 0.38 +1.0
1,696,073 - ccoP OKGIIK_07670 0.38 -0.4
1,696,328 - ccoP OKGIIK_07670 0.66 -0.1
1,696,469 + ccoP OKGIIK_07670 0.82 -1.0
1,696,469 + ccoP OKGIIK_07670 0.82 -2.4
1,696,469 + ccoP OKGIIK_07670 0.82 -1.2
1,696,469 + ccoP OKGIIK_07670 0.82 -0.2
1,696,469 + ccoP OKGIIK_07670 0.82 -0.8
1,696,470 - ccoP OKGIIK_07670 0.82 +0.5
1,696,588 + +1.0
1,696,589 - -1.4
1,696,594 + -0.0
1,696,780 + OKGIIK_07675 0.68 +1.4
1,696,780 + OKGIIK_07675 0.68 +3.5
1,697,228 - OKGIIK_07680 0.17 +0.7
1,697,242 + OKGIIK_07680 0.17 -1.2

Or see this region's nucleotide sequence