Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03795 and grxC are separated by 127 nucleotides grxC and yurZ overlap by 4 nucleotides yurZ and leuB are separated by 191 nucleotides
OKGIIK_03795: OKGIIK_03795 - Putative beta-barrel assembly-enhancing protease, at 837,829 to 839,532
_03795
OKGIIK_03800: grxC - glutaredoxin 3, at 839,660 to 839,923
grxC
OKGIIK_03805: yurZ - carboxymuconolactone decarboxylase family protein, at 839,920 to 840,306
yurZ
OKGIIK_03810: leuB - isocitrate dehydrogenase, at 840,498 to 841,511
leuB
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2 at 839.309 kb on + strand, within OKGIIK_03795 at 839.309 kb on + strand, within OKGIIK_03795 at 839.309 kb on + strand, within OKGIIK_03795 at 839.310 kb on - strand, within OKGIIK_03795 at 839.310 kb on - strand, within OKGIIK_03795 at 839.310 kb on - strand, within OKGIIK_03795 at 839.310 kb on - strand, within OKGIIK_03795 at 839.310 kb on - strand, within OKGIIK_03795 at 839.310 kb on - strand, within OKGIIK_03795 at 839.310 kb on - strand, within OKGIIK_03795 at 839.310 kb on - strand, within OKGIIK_03795 at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.532 kb on + strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.533 kb on - strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.547 kb on + strand at 839.548 kb on - strand at 839.548 kb on - strand at 839.548 kb on - strand at 839.548 kb on - strand at 839.548 kb on - strand at 839.548 kb on - strand at 839.548 kb on - strand at 839.548 kb on - strand at 839.622 kb on + strand at 839.623 kb on - strand at 839.623 kb on - strand at 839.678 kb on + strand at 839.678 kb on + strand at 839.678 kb on + strand at 839.678 kb on + strand at 839.678 kb on + strand at 839.679 kb on - strand at 839.679 kb on - strand at 839.679 kb on - strand at 839.679 kb on - strand at 839.679 kb on - strand at 839.679 kb on - strand at 839.679 kb on - strand at 839.679 kb on - strand at 839.691 kb on + strand, within grxC at 839.691 kb on + strand, within grxC at 839.692 kb on - strand, within grxC at 839.692 kb on - strand, within grxC at 839.699 kb on + strand, within grxC at 839.699 kb on + strand, within grxC at 839.699 kb on + strand, within grxC at 839.832 kb on - strand, within grxC at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.031 kb on + strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.032 kb on - strand, within yurZ at 840.118 kb on + strand, within yurZ at 840.118 kb on + strand, within yurZ at 840.118 kb on + strand, within yurZ at 840.118 kb on + strand, within yurZ at 840.118 kb on + strand, within yurZ at 840.118 kb on + strand, within yurZ at 840.119 kb on - strand, within yurZ at 840.119 kb on - strand, within yurZ at 840.119 kb on - strand, within yurZ at 840.119 kb on - strand, within yurZ at 840.119 kb on - strand, within yurZ at 840.119 kb on - strand, within yurZ at 840.119 kb on - strand, within yurZ at 840.119 kb on - strand, within yurZ at 840.119 kb on - strand, within yurZ at 840.304 kb on + strand at 840.305 kb on - strand at 840.305 kb on - strand at 840.305 kb on - strand at 840.305 kb on - strand at 840.305 kb on - strand at 840.364 kb on + strand at 840.364 kb on + strand at 840.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 839,309 + OKGIIK_03795 0.87 -1.1 839,309 + OKGIIK_03795 0.87 +0.2 839,309 + OKGIIK_03795 0.87 +0.4 839,310 - OKGIIK_03795 0.87 -2.7 839,310 - OKGIIK_03795 0.87 -0.5 839,310 - OKGIIK_03795 0.87 -0.2 839,310 - OKGIIK_03795 0.87 -0.9 839,310 - OKGIIK_03795 0.87 -0.3 839,310 - OKGIIK_03795 0.87 -1.6 839,310 - OKGIIK_03795 0.87 -1.5 839,310 - OKGIIK_03795 0.87 -0.5 839,532 + -1.3 839,532 + -0.0 839,532 + -0.7 839,532 + +0.7 839,532 + -0.2 839,532 + -1.2 839,532 + -0.7 839,532 + -0.2 839,532 + -0.2 839,532 + -1.6 839,532 + -0.1 839,532 + +0.3 839,532 + -0.4 839,532 + +0.1 839,532 + +0.5 839,532 + +0.5 839,532 + +0.2 839,532 + -1.4 839,532 + +0.3 839,533 - +1.9 839,533 - +1.7 839,533 - +0.5 839,533 - -0.6 839,533 - -0.1 839,533 - -0.6 839,533 - -0.7 839,533 - -2.2 839,533 - -0.0 839,533 - +0.4 839,533 - -1.4 839,533 - +0.3 839,547 + +0.2 839,547 + -0.8 839,547 + -0.3 839,547 + +0.0 839,547 + -1.0 839,547 + -0.1 839,547 + -0.8 839,547 + +0.3 839,547 + -1.0 839,547 + +0.5 839,547 + -0.4 839,547 + -1.4 839,547 + -0.9 839,547 + +2.2 839,547 + +0.5 839,547 + -0.8 839,548 - -0.2 839,548 - -0.5 839,548 - +0.6 839,548 - +0.0 839,548 - +1.0 839,548 - -0.7 839,548 - +0.6 839,548 - +0.0 839,622 + +0.2 839,623 - +0.4 839,623 - -1.0 839,678 + -1.4 839,678 + -0.5 839,678 + -0.5 839,678 + +0.9 839,678 + -0.8 839,679 - -0.1 839,679 - +0.1 839,679 - +0.2 839,679 - -0.1 839,679 - -1.6 839,679 - -0.5 839,679 - +0.4 839,679 - +0.2 839,691 + grxC OKGIIK_03800 0.12 -0.3 839,691 + grxC OKGIIK_03800 0.12 +0.3 839,692 - grxC OKGIIK_03800 0.12 +0.3 839,692 - grxC OKGIIK_03800 0.12 -0.2 839,699 + grxC OKGIIK_03800 0.15 +0.4 839,699 + grxC OKGIIK_03800 0.15 -2.0 839,699 + grxC OKGIIK_03800 0.15 +0.0 839,832 - grxC OKGIIK_03800 0.65 +0.6 840,031 + yurZ OKGIIK_03805 0.29 -0.8 840,031 + yurZ OKGIIK_03805 0.29 +0.7 840,031 + yurZ OKGIIK_03805 0.29 +0.1 840,031 + yurZ OKGIIK_03805 0.29 -1.4 840,031 + yurZ OKGIIK_03805 0.29 -1.0 840,031 + yurZ OKGIIK_03805 0.29 +0.4 840,031 + yurZ OKGIIK_03805 0.29 +0.4 840,031 + yurZ OKGIIK_03805 0.29 -0.2 840,031 + yurZ OKGIIK_03805 0.29 +1.2 840,031 + yurZ OKGIIK_03805 0.29 -1.1 840,031 + yurZ OKGIIK_03805 0.29 +0.4 840,031 + yurZ OKGIIK_03805 0.29 +0.3 840,031 + yurZ OKGIIK_03805 0.29 +0.9 840,031 + yurZ OKGIIK_03805 0.29 -0.1 840,031 + yurZ OKGIIK_03805 0.29 +1.2 840,031 + yurZ OKGIIK_03805 0.29 +1.5 840,031 + yurZ OKGIIK_03805 0.29 -1.0 840,032 - yurZ OKGIIK_03805 0.29 +0.4 840,032 - yurZ OKGIIK_03805 0.29 -0.6 840,032 - yurZ OKGIIK_03805 0.29 -0.8 840,032 - yurZ OKGIIK_03805 0.29 -1.6 840,032 - yurZ OKGIIK_03805 0.29 +1.0 840,032 - yurZ OKGIIK_03805 0.29 -0.5 840,032 - yurZ OKGIIK_03805 0.29 -2.1 840,032 - yurZ OKGIIK_03805 0.29 -1.2 840,032 - yurZ OKGIIK_03805 0.29 +0.5 840,032 - yurZ OKGIIK_03805 0.29 -0.2 840,032 - yurZ OKGIIK_03805 0.29 +0.6 840,032 - yurZ OKGIIK_03805 0.29 +0.3 840,118 + yurZ OKGIIK_03805 0.51 -0.2 840,118 + yurZ OKGIIK_03805 0.51 +0.3 840,118 + yurZ OKGIIK_03805 0.51 -2.1 840,118 + yurZ OKGIIK_03805 0.51 +1.5 840,118 + yurZ OKGIIK_03805 0.51 -0.2 840,118 + yurZ OKGIIK_03805 0.51 +0.1 840,119 - yurZ OKGIIK_03805 0.51 +0.4 840,119 - yurZ OKGIIK_03805 0.51 -0.3 840,119 - yurZ OKGIIK_03805 0.51 -0.8 840,119 - yurZ OKGIIK_03805 0.51 -0.5 840,119 - yurZ OKGIIK_03805 0.51 -2.0 840,119 - yurZ OKGIIK_03805 0.51 +0.4 840,119 - yurZ OKGIIK_03805 0.51 -0.0 840,119 - yurZ OKGIIK_03805 0.51 -0.0 840,119 - yurZ OKGIIK_03805 0.51 +0.6 840,304 + -0.5 840,305 - -0.3 840,305 - -0.1 840,305 - +0.2 840,305 - +0.2 840,305 - -0.1 840,364 + -0.1 840,364 + -0.4 840,419 + -0.5
Or see this region's nucleotide sequence