Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yceI and OKGIIK_01590 overlap by 1 nucleotides OKGIIK_01590 and OKGIIK_01595 overlap by 4 nucleotides OKGIIK_01595 and ispA are separated by 919 nucleotides
OKGIIK_01585: yceI - polyisoprenoid-binding protein, at 360,120 to 360,668
yceI
OKGIIK_01590: OKGIIK_01590 - cytochrome B, at 360,668 to 361,246
_01590
OKGIIK_01595: OKGIIK_01595 - Polyisoprenoid-binding protein, at 361,243 to 361,818
_01595
OKGIIK_01600: ispA - octaprenyl-diphosphate synthase, at 362,738 to 363,742
ispA
Position (kb) 361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 360.505 kb on + strand, within yceI at 360.505 kb on + strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.576 kb on + strand, within yceI at 360.576 kb on + strand, within yceI at 360.576 kb on + strand, within yceI at 360.576 kb on + strand, within yceI at 360.576 kb on + strand, within yceI at 360.577 kb on - strand, within yceI at 360.577 kb on - strand, within yceI at 360.577 kb on - strand, within yceI at 360.577 kb on - strand, within yceI at 360.604 kb on + strand, within yceI at 360.604 kb on + strand, within yceI at 360.604 kb on + strand, within yceI at 360.604 kb on + strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 361.409 kb on + strand, within OKGIIK_01595 at 361.544 kb on + strand, within OKGIIK_01595 at 361.545 kb on - strand, within OKGIIK_01595 at 361.545 kb on - strand, within OKGIIK_01595 at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 362.026 kb on + strand at 362.026 kb on + strand at 362.026 kb on + strand at 362.026 kb on + strand at 362.027 kb on - strand at 362.027 kb on - strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 360,505 + yceI OKGIIK_01585 0.70 +0.1 360,505 + yceI OKGIIK_01585 0.70 -0.3 360,506 - yceI OKGIIK_01585 0.70 -0.6 360,506 - yceI OKGIIK_01585 0.70 -1.5 360,506 - yceI OKGIIK_01585 0.70 +1.2 360,506 - yceI OKGIIK_01585 0.70 -2.9 360,506 - yceI OKGIIK_01585 0.70 -1.4 360,506 - yceI OKGIIK_01585 0.70 +0.1 360,576 + yceI OKGIIK_01585 0.83 -1.7 360,576 + yceI OKGIIK_01585 0.83 +0.2 360,576 + yceI OKGIIK_01585 0.83 -0.5 360,576 + yceI OKGIIK_01585 0.83 -1.4 360,576 + yceI OKGIIK_01585 0.83 -0.9 360,577 - yceI OKGIIK_01585 0.83 +1.1 360,577 - yceI OKGIIK_01585 0.83 +0.7 360,577 - yceI OKGIIK_01585 0.83 -1.7 360,577 - yceI OKGIIK_01585 0.83 +1.4 360,604 + yceI OKGIIK_01585 0.88 -0.3 360,604 + yceI OKGIIK_01585 0.88 +1.0 360,604 + yceI OKGIIK_01585 0.88 -0.5 360,604 + yceI OKGIIK_01585 0.88 -0.2 360,605 - yceI OKGIIK_01585 0.88 -1.2 360,605 - yceI OKGIIK_01585 0.88 +0.3 360,605 - yceI OKGIIK_01585 0.88 -0.5 360,605 - yceI OKGIIK_01585 0.88 +0.4 360,605 - yceI OKGIIK_01585 0.88 -1.7 360,605 - yceI OKGIIK_01585 0.88 +0.2 360,605 - yceI OKGIIK_01585 0.88 +1.7 360,814 - OKGIIK_01590 0.25 -1.5 360,814 - OKGIIK_01590 0.25 -0.2 360,814 - OKGIIK_01590 0.25 -1.1 360,814 - OKGIIK_01590 0.25 -0.8 360,814 - OKGIIK_01590 0.25 -2.4 360,814 - OKGIIK_01590 0.25 +0.5 360,814 - OKGIIK_01590 0.25 -2.8 360,960 + OKGIIK_01590 0.50 -2.2 360,960 + OKGIIK_01590 0.50 +1.1 360,960 + OKGIIK_01590 0.50 -0.2 360,960 + OKGIIK_01590 0.50 -0.0 360,960 + OKGIIK_01590 0.50 -0.9 360,960 + OKGIIK_01590 0.50 +0.7 360,960 + OKGIIK_01590 0.50 +1.1 360,960 + OKGIIK_01590 0.50 -2.2 360,960 + OKGIIK_01590 0.50 -0.4 360,960 + OKGIIK_01590 0.50 -1.4 360,961 - OKGIIK_01590 0.51 -1.2 360,961 - OKGIIK_01590 0.51 -1.7 360,961 - OKGIIK_01590 0.51 -1.7 360,961 - OKGIIK_01590 0.51 -1.0 360,961 - OKGIIK_01590 0.51 +0.4 360,961 - OKGIIK_01590 0.51 -2.2 360,961 - OKGIIK_01590 0.51 -0.8 360,961 - OKGIIK_01590 0.51 -1.1 360,961 - OKGIIK_01590 0.51 +0.5 360,961 - OKGIIK_01590 0.51 -0.7 360,961 - OKGIIK_01590 0.51 -1.0 360,961 - OKGIIK_01590 0.51 +0.2 360,961 - OKGIIK_01590 0.51 -0.6 360,961 - OKGIIK_01590 0.51 -1.8 361,409 + OKGIIK_01595 0.29 +1.1 361,544 + OKGIIK_01595 0.52 -0.5 361,545 - OKGIIK_01595 0.52 +1.1 361,545 - OKGIIK_01595 0.52 +0.7 361,966 + -0.3 361,966 + +1.0 361,966 + -0.5 361,966 + -2.7 361,966 + +0.1 361,966 + +0.4 361,966 + +0.3 361,966 + +0.9 361,966 + +0.7 361,966 + +0.0 361,966 + +2.0 361,966 + +0.9 361,966 + -0.1 361,966 + +1.1 361,967 - +1.7 361,967 - -0.2 361,967 - +0.8 361,967 - -0.1 361,967 - -0.9 361,967 - +1.4 361,967 - +1.3 361,967 - +1.3 361,967 - +0.0 361,967 - +1.4 362,026 + +0.4 362,026 + +0.3 362,026 + -1.1 362,026 + +0.7 362,027 - -1.6 362,027 - -0.3 362,716 + -0.8 362,716 + -0.7 362,716 + -0.9 362,716 + -0.9 362,716 + -2.4 362,716 + +0.6 362,716 + -0.2 362,716 + +0.1 362,716 + -0.1 362,716 + +0.8 362,717 - +1.1
Or see this region's nucleotide sequence