Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00710 and OKGIIK_00715 are separated by 122 nucleotides OKGIIK_00715 and ygjP are separated by 59 nucleotides ygjP and OKGIIK_00725 are separated by 2 nucleotides
OKGIIK_00710: OKGIIK_00710 - hypothetical protein, at 155,471 to 157,066
_00710
OKGIIK_00715: OKGIIK_00715 - glyoxalase, at 157,189 to 157,572
_00715
OKGIIK_00720: ygjP - metal-dependent hydrolase, at 157,632 to 158,150
ygjP
OKGIIK_00725: OKGIIK_00725 - DUF6348 domain-containing protein, at 158,153 to 158,797
_00725
Position (kb) 157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 156.239 kb on + strand, within OKGIIK_00710 at 156.239 kb on + strand, within OKGIIK_00710 at 156.239 kb on + strand, within OKGIIK_00710 at 156.240 kb on - strand, within OKGIIK_00710 at 156.240 kb on - strand, within OKGIIK_00710 at 156.305 kb on + strand, within OKGIIK_00710 at 156.305 kb on + strand, within OKGIIK_00710 at 156.305 kb on + strand, within OKGIIK_00710 at 156.305 kb on + strand, within OKGIIK_00710 at 156.305 kb on + strand, within OKGIIK_00710 at 156.306 kb on - strand, within OKGIIK_00710 at 156.306 kb on - strand, within OKGIIK_00710 at 156.306 kb on - strand, within OKGIIK_00710 at 156.306 kb on - strand, within OKGIIK_00710 at 156.368 kb on + strand, within OKGIIK_00710 at 156.368 kb on + strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.369 kb on - strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.537 kb on + strand, within OKGIIK_00710 at 156.538 kb on - strand, within OKGIIK_00710 at 156.538 kb on - strand, within OKGIIK_00710 at 156.575 kb on + strand, within OKGIIK_00710 at 156.650 kb on + strand, within OKGIIK_00710 at 156.650 kb on + strand, within OKGIIK_00710 at 156.651 kb on - strand, within OKGIIK_00710 at 156.668 kb on + strand, within OKGIIK_00710 at 156.669 kb on - strand, within OKGIIK_00710 at 156.669 kb on - strand, within OKGIIK_00710 at 156.704 kb on + strand, within OKGIIK_00710 at 156.705 kb on - strand, within OKGIIK_00710 at 156.737 kb on + strand, within OKGIIK_00710 at 156.737 kb on + strand, within OKGIIK_00710 at 156.737 kb on + strand, within OKGIIK_00710 at 156.737 kb on + strand, within OKGIIK_00710 at 156.737 kb on + strand, within OKGIIK_00710 at 156.737 kb on + strand, within OKGIIK_00710 at 156.737 kb on + strand, within OKGIIK_00710 at 156.737 kb on + strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.738 kb on - strand, within OKGIIK_00710 at 156.791 kb on + strand, within OKGIIK_00710 at 156.791 kb on + strand, within OKGIIK_00710 at 156.792 kb on - strand, within OKGIIK_00710 at 156.792 kb on - strand, within OKGIIK_00710 at 156.938 kb on + strand at 156.938 kb on + strand at 156.938 kb on + strand at 156.939 kb on - strand at 156.939 kb on - strand at 156.983 kb on + strand at 156.983 kb on + strand at 156.983 kb on + strand at 156.984 kb on - strand at 156.995 kb on + strand at 156.995 kb on + strand at 156.995 kb on + strand at 157.065 kb on - strand at 157.065 kb on - strand at 157.442 kb on + strand, within OKGIIK_00715 at 157.442 kb on + strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.443 kb on - strand, within OKGIIK_00715 at 157.597 kb on + strand at 157.597 kb on + strand at 157.597 kb on + strand at 157.598 kb on - strand at 157.616 kb on + strand at 157.617 kb on - strand at 157.624 kb on + strand at 157.624 kb on + strand at 157.625 kb on - strand at 157.647 kb on + strand at 157.647 kb on + strand at 157.647 kb on + strand at 157.647 kb on + strand at 157.647 kb on + strand at 157.659 kb on + strand at 157.660 kb on - strand at 157.773 kb on + strand, within ygjP at 157.773 kb on + strand, within ygjP at 157.773 kb on + strand, within ygjP at 157.773 kb on + strand, within ygjP at 157.773 kb on + strand, within ygjP at 157.774 kb on - strand, within ygjP at 157.774 kb on - strand, within ygjP at 157.774 kb on - strand, within ygjP at 157.779 kb on + strand, within ygjP at 157.779 kb on + strand, within ygjP at 157.779 kb on + strand, within ygjP at 157.779 kb on + strand, within ygjP at 157.780 kb on - strand, within ygjP at 157.780 kb on - strand, within ygjP at 157.780 kb on - strand, within ygjP at 157.780 kb on - strand, within ygjP at 157.780 kb on - strand, within ygjP at 157.839 kb on + strand, within ygjP at 157.839 kb on + strand, within ygjP at 157.839 kb on + strand, within ygjP at 157.839 kb on + strand, within ygjP at 157.840 kb on - strand, within ygjP at 157.840 kb on - strand, within ygjP at 157.840 kb on - strand, within ygjP at 157.840 kb on - strand, within ygjP at 157.840 kb on - strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.037 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.052 kb on + strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.053 kb on - strand, within ygjP at 158.067 kb on + strand, within ygjP at 158.097 kb on + strand, within ygjP at 158.097 kb on + strand, within ygjP at 158.097 kb on + strand, within ygjP at 158.097 kb on + strand, within ygjP at 158.098 kb on - strand, within ygjP at 158.098 kb on - strand, within ygjP at 158.106 kb on - strand at 158.177 kb on + strand at 158.177 kb on + strand at 158.177 kb on + strand at 158.177 kb on + strand at 158.177 kb on + strand at 158.177 kb on + strand at 158.178 kb on - strand at 158.178 kb on - strand at 158.178 kb on - strand at 158.178 kb on - strand at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.450 kb on + strand, within OKGIIK_00725 at 158.451 kb on - strand, within OKGIIK_00725 at 158.451 kb on - strand, within OKGIIK_00725 at 158.451 kb on - strand, within OKGIIK_00725 at 158.451 kb on - strand, within OKGIIK_00725
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 156,239 + OKGIIK_00710 0.48 -2.4 156,239 + OKGIIK_00710 0.48 +0.4 156,239 + OKGIIK_00710 0.48 -1.4 156,240 - OKGIIK_00710 0.48 -0.6 156,240 - OKGIIK_00710 0.48 -0.2 156,305 + OKGIIK_00710 0.52 -0.1 156,305 + OKGIIK_00710 0.52 -0.5 156,305 + OKGIIK_00710 0.52 -0.6 156,305 + OKGIIK_00710 0.52 -0.2 156,305 + OKGIIK_00710 0.52 -1.0 156,306 - OKGIIK_00710 0.52 -1.0 156,306 - OKGIIK_00710 0.52 -1.4 156,306 - OKGIIK_00710 0.52 -1.0 156,306 - OKGIIK_00710 0.52 -2.6 156,368 + OKGIIK_00710 0.56 -0.0 156,368 + OKGIIK_00710 0.56 -3.4 156,369 - OKGIIK_00710 0.56 -1.6 156,369 - OKGIIK_00710 0.56 -1.0 156,369 - OKGIIK_00710 0.56 -2.8 156,369 - OKGIIK_00710 0.56 -2.4 156,369 - OKGIIK_00710 0.56 +1.5 156,369 - OKGIIK_00710 0.56 -0.6 156,369 - OKGIIK_00710 0.56 +0.5 156,369 - OKGIIK_00710 0.56 -1.6 156,369 - OKGIIK_00710 0.56 +1.0 156,369 - OKGIIK_00710 0.56 -1.0 156,537 + OKGIIK_00710 0.67 +0.7 156,537 + OKGIIK_00710 0.67 -0.4 156,537 + OKGIIK_00710 0.67 +1.6 156,537 + OKGIIK_00710 0.67 -0.0 156,537 + OKGIIK_00710 0.67 +0.3 156,537 + OKGIIK_00710 0.67 +0.4 156,537 + OKGIIK_00710 0.67 +0.2 156,537 + OKGIIK_00710 0.67 -1.6 156,537 + OKGIIK_00710 0.67 +0.6 156,537 + OKGIIK_00710 0.67 -0.8 156,537 + OKGIIK_00710 0.67 -1.4 156,538 - OKGIIK_00710 0.67 +0.1 156,538 - OKGIIK_00710 0.67 -1.1 156,575 + OKGIIK_00710 0.69 -2.5 156,650 + OKGIIK_00710 0.74 -1.6 156,650 + OKGIIK_00710 0.74 +0.6 156,651 - OKGIIK_00710 0.74 +0.8 156,668 + OKGIIK_00710 0.75 -0.4 156,669 - OKGIIK_00710 0.75 -1.0 156,669 - OKGIIK_00710 0.75 -0.6 156,704 + OKGIIK_00710 0.77 +0.8 156,705 - OKGIIK_00710 0.77 -1.0 156,737 + OKGIIK_00710 0.79 -1.0 156,737 + OKGIIK_00710 0.79 +1.0 156,737 + OKGIIK_00710 0.79 +1.8 156,737 + OKGIIK_00710 0.79 -1.3 156,737 + OKGIIK_00710 0.79 -0.2 156,737 + OKGIIK_00710 0.79 +0.1 156,737 + OKGIIK_00710 0.79 -0.0 156,737 + OKGIIK_00710 0.79 +0.5 156,738 - OKGIIK_00710 0.79 -1.5 156,738 - OKGIIK_00710 0.79 -1.0 156,738 - OKGIIK_00710 0.79 -4.2 156,738 - OKGIIK_00710 0.79 -0.6 156,738 - OKGIIK_00710 0.79 +0.5 156,738 - OKGIIK_00710 0.79 -0.8 156,738 - OKGIIK_00710 0.79 -0.8 156,738 - OKGIIK_00710 0.79 -2.4 156,738 - OKGIIK_00710 0.79 -1.0 156,738 - OKGIIK_00710 0.79 +0.5 156,738 - OKGIIK_00710 0.79 +1.8 156,738 - OKGIIK_00710 0.79 -2.6 156,791 + OKGIIK_00710 0.83 -1.2 156,791 + OKGIIK_00710 0.83 -0.0 156,792 - OKGIIK_00710 0.83 +0.6 156,792 - OKGIIK_00710 0.83 -0.3 156,938 + -0.4 156,938 + +0.9 156,938 + +0.7 156,939 - -1.4 156,939 - +0.4 156,983 + -1.6 156,983 + +0.5 156,983 + -0.2 156,984 - +1.2 156,995 + +1.3 156,995 + -2.5 156,995 + -1.4 157,065 - -0.4 157,065 - +0.4 157,442 + OKGIIK_00715 0.66 -1.4 157,442 + OKGIIK_00715 0.66 -1.7 157,443 - OKGIIK_00715 0.66 +0.5 157,443 - OKGIIK_00715 0.66 -1.1 157,443 - OKGIIK_00715 0.66 -1.4 157,443 - OKGIIK_00715 0.66 -0.8 157,443 - OKGIIK_00715 0.66 +1.8 157,443 - OKGIIK_00715 0.66 +1.0 157,443 - OKGIIK_00715 0.66 -1.4 157,597 + -0.3 157,597 + -0.5 157,597 + -1.0 157,598 - -0.6 157,616 + -0.2 157,617 - +0.5 157,624 + -1.5 157,624 + -1.1 157,625 - +0.2 157,647 + +1.2 157,647 + +2.2 157,647 + -0.6 157,647 + +0.2 157,647 + -1.5 157,659 + +0.1 157,660 - -0.0 157,773 + ygjP OKGIIK_00720 0.27 -2.4 157,773 + ygjP OKGIIK_00720 0.27 -2.4 157,773 + ygjP OKGIIK_00720 0.27 -1.6 157,773 + ygjP OKGIIK_00720 0.27 +0.3 157,773 + ygjP OKGIIK_00720 0.27 -1.5 157,774 - ygjP OKGIIK_00720 0.27 +2.3 157,774 - ygjP OKGIIK_00720 0.27 +0.2 157,774 - ygjP OKGIIK_00720 0.27 +0.2 157,779 + ygjP OKGIIK_00720 0.28 +0.6 157,779 + ygjP OKGIIK_00720 0.28 -1.6 157,779 + ygjP OKGIIK_00720 0.28 -1.4 157,779 + ygjP OKGIIK_00720 0.28 -0.6 157,780 - ygjP OKGIIK_00720 0.29 -0.5 157,780 - ygjP OKGIIK_00720 0.29 +1.2 157,780 - ygjP OKGIIK_00720 0.29 -2.3 157,780 - ygjP OKGIIK_00720 0.29 +1.0 157,780 - ygjP OKGIIK_00720 0.29 -1.0 157,839 + ygjP OKGIIK_00720 0.40 -0.0 157,839 + ygjP OKGIIK_00720 0.40 -0.4 157,839 + ygjP OKGIIK_00720 0.40 -1.0 157,839 + ygjP OKGIIK_00720 0.40 -1.4 157,840 - ygjP OKGIIK_00720 0.40 +1.0 157,840 - ygjP OKGIIK_00720 0.40 +0.5 157,840 - ygjP OKGIIK_00720 0.40 +1.0 157,840 - ygjP OKGIIK_00720 0.40 +1.0 157,840 - ygjP OKGIIK_00720 0.40 -0.0 158,037 + ygjP OKGIIK_00720 0.78 -0.9 158,037 + ygjP OKGIIK_00720 0.78 +0.5 158,037 + ygjP OKGIIK_00720 0.78 -1.4 158,037 + ygjP OKGIIK_00720 0.78 -3.1 158,037 + ygjP OKGIIK_00720 0.78 -0.6 158,037 + ygjP OKGIIK_00720 0.78 -0.8 158,037 + ygjP OKGIIK_00720 0.78 -0.2 158,037 + ygjP OKGIIK_00720 0.78 -0.0 158,052 + ygjP OKGIIK_00720 0.81 -0.7 158,052 + ygjP OKGIIK_00720 0.81 -1.0 158,052 + ygjP OKGIIK_00720 0.81 -1.4 158,052 + ygjP OKGIIK_00720 0.81 -0.8 158,052 + ygjP OKGIIK_00720 0.81 -1.0 158,052 + ygjP OKGIIK_00720 0.81 -1.0 158,052 + ygjP OKGIIK_00720 0.81 -0.0 158,052 + ygjP OKGIIK_00720 0.81 -2.0 158,052 + ygjP OKGIIK_00720 0.81 -0.1 158,052 + ygjP OKGIIK_00720 0.81 +0.6 158,052 + ygjP OKGIIK_00720 0.81 -1.2 158,052 + ygjP OKGIIK_00720 0.81 +0.0 158,052 + ygjP OKGIIK_00720 0.81 +1.3 158,052 + ygjP OKGIIK_00720 0.81 +1.2 158,053 - ygjP OKGIIK_00720 0.81 +0.4 158,053 - ygjP OKGIIK_00720 0.81 -1.0 158,053 - ygjP OKGIIK_00720 0.81 -0.6 158,053 - ygjP OKGIIK_00720 0.81 +1.0 158,053 - ygjP OKGIIK_00720 0.81 -1.3 158,053 - ygjP OKGIIK_00720 0.81 +0.4 158,053 - ygjP OKGIIK_00720 0.81 -0.6 158,053 - ygjP OKGIIK_00720 0.81 -0.8 158,053 - ygjP OKGIIK_00720 0.81 -0.7 158,053 - ygjP OKGIIK_00720 0.81 -0.5 158,067 + ygjP OKGIIK_00720 0.84 -1.4 158,097 + ygjP OKGIIK_00720 0.90 -1.2 158,097 + ygjP OKGIIK_00720 0.90 -1.8 158,097 + ygjP OKGIIK_00720 0.90 -1.0 158,097 + ygjP OKGIIK_00720 0.90 -0.8 158,098 - ygjP OKGIIK_00720 0.90 +0.5 158,098 - ygjP OKGIIK_00720 0.90 -1.6 158,106 - -1.0 158,177 + +0.8 158,177 + -1.6 158,177 + -1.4 158,177 + -0.4 158,177 + +0.2 158,177 + -0.6 158,178 - +0.5 158,178 - -0.4 158,178 - +0.1 158,178 - +0.4 158,450 + OKGIIK_00725 0.46 +0.8 158,450 + OKGIIK_00725 0.46 +1.0 158,450 + OKGIIK_00725 0.46 +0.1 158,450 + OKGIIK_00725 0.46 +0.8 158,450 + OKGIIK_00725 0.46 -2.2 158,450 + OKGIIK_00725 0.46 +0.4 158,450 + OKGIIK_00725 0.46 -1.0 158,451 - OKGIIK_00725 0.46 +1.0 158,451 - OKGIIK_00725 0.46 -0.8 158,451 - OKGIIK_00725 0.46 -1.4 158,451 - OKGIIK_00725 0.46 -1.6
Or see this region's nucleotide sequence