Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00310

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00305 and OKGIIK_00310 are separated by 144 nucleotidesOKGIIK_00310 and OKGIIK_00315 are separated by 111 nucleotides OKGIIK_00305: OKGIIK_00305 - Phosphodiesterase, at 73,043 to 74,446 _00305 OKGIIK_00310: OKGIIK_00310 - Peptidase, at 74,591 to 75,517 _00310 OKGIIK_00315: OKGIIK_00315 - MFS transporter, at 75,629 to 77,029 _00315 Position (kb) 74 75 76Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 73.646 kb on + strand, within OKGIIK_00305at 73.646 kb on + strand, within OKGIIK_00305at 73.646 kb on + strand, within OKGIIK_00305at 73.646 kb on + strand, within OKGIIK_00305at 73.646 kb on + strand, within OKGIIK_00305at 73.646 kb on + strand, within OKGIIK_00305at 73.647 kb on - strand, within OKGIIK_00305at 73.647 kb on - strand, within OKGIIK_00305at 73.647 kb on - strand, within OKGIIK_00305at 73.647 kb on - strand, within OKGIIK_00305at 73.647 kb on - strand, within OKGIIK_00305at 73.647 kb on - strand, within OKGIIK_00305at 73.710 kb on + strand, within OKGIIK_00305at 73.711 kb on - strand, within OKGIIK_00305at 74.139 kb on - strand, within OKGIIK_00305at 74.219 kb on + strand, within OKGIIK_00305at 74.549 kb on + strandat 74.549 kb on + strandat 74.549 kb on + strandat 74.549 kb on + strandat 74.549 kb on + strandat 74.549 kb on + strandat 74.550 kb on - strandat 74.550 kb on - strandat 74.550 kb on - strandat 74.550 kb on - strandat 74.550 kb on - strandat 74.550 kb on - strandat 74.609 kb on + strandat 74.609 kb on + strandat 74.609 kb on + strandat 74.609 kb on + strandat 74.609 kb on + strandat 74.609 kb on + strandat 74.610 kb on - strandat 74.610 kb on - strandat 74.690 kb on + strand, within OKGIIK_00310at 74.765 kb on + strand, within OKGIIK_00310at 74.765 kb on + strand, within OKGIIK_00310at 74.765 kb on + strand, within OKGIIK_00310at 74.765 kb on + strand, within OKGIIK_00310at 74.765 kb on + strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.766 kb on - strand, within OKGIIK_00310at 74.780 kb on + strand, within OKGIIK_00310at 74.780 kb on + strand, within OKGIIK_00310at 74.780 kb on + strand, within OKGIIK_00310at 74.781 kb on - strand, within OKGIIK_00310at 74.915 kb on + strand, within OKGIIK_00310at 74.915 kb on + strand, within OKGIIK_00310at 74.915 kb on + strand, within OKGIIK_00310at 74.915 kb on + strand, within OKGIIK_00310at 74.916 kb on - strand, within OKGIIK_00310at 74.916 kb on - strand, within OKGIIK_00310at 74.966 kb on + strand, within OKGIIK_00310at 74.967 kb on - strand, within OKGIIK_00310at 74.967 kb on - strand, within OKGIIK_00310at 74.967 kb on - strand, within OKGIIK_00310at 75.203 kb on + strand, within OKGIIK_00310at 75.203 kb on + strand, within OKGIIK_00310at 75.203 kb on + strand, within OKGIIK_00310at 75.203 kb on + strand, within OKGIIK_00310at 75.203 kb on + strand, within OKGIIK_00310at 75.204 kb on - strand, within OKGIIK_00310at 75.204 kb on - strand, within OKGIIK_00310at 75.204 kb on - strand, within OKGIIK_00310at 75.204 kb on - strand, within OKGIIK_00310at 75.204 kb on - strand, within OKGIIK_00310at 75.204 kb on - strand, within OKGIIK_00310at 75.347 kb on + strand, within OKGIIK_00310at 75.347 kb on + strand, within OKGIIK_00310at 75.348 kb on - strand, within OKGIIK_00310at 75.348 kb on - strand, within OKGIIK_00310at 75.395 kb on + strand, within OKGIIK_00310at 75.416 kb on + strand, within OKGIIK_00310at 75.417 kb on - strand, within OKGIIK_00310at 75.417 kb on - strand, within OKGIIK_00310at 75.737 kb on + strandat 75.760 kb on - strandat 75.807 kb on + strand, within OKGIIK_00315at 75.808 kb on - strand, within OKGIIK_00315at 75.808 kb on - strand, within OKGIIK_00315at 75.808 kb on - strand, within OKGIIK_00315at 75.846 kb on + strand, within OKGIIK_00315at 75.846 kb on + strand, within OKGIIK_00315at 75.846 kb on + strand, within OKGIIK_00315at 75.847 kb on - strand, within OKGIIK_00315at 75.847 kb on - strand, within OKGIIK_00315at 75.847 kb on - strand, within OKGIIK_00315at 75.861 kb on + strand, within OKGIIK_00315at 75.861 kb on + strand, within OKGIIK_00315at 75.861 kb on + strand, within OKGIIK_00315at 75.862 kb on - strand, within OKGIIK_00315at 75.862 kb on - strand, within OKGIIK_00315at 75.862 kb on - strand, within OKGIIK_00315at 75.862 kb on - strand, within OKGIIK_00315at 75.862 kb on - strand, within OKGIIK_00315at 75.870 kb on + strand, within OKGIIK_00315at 75.870 kb on + strand, within OKGIIK_00315at 75.870 kb on + strand, within OKGIIK_00315at 75.871 kb on - strand, within OKGIIK_00315at 75.876 kb on + strand, within OKGIIK_00315at 75.876 kb on + strand, within OKGIIK_00315at 75.877 kb on - strand, within OKGIIK_00315at 75.877 kb on - strand, within OKGIIK_00315at 75.877 kb on - strand, within OKGIIK_00315at 75.877 kb on - strand, within OKGIIK_00315at 75.908 kb on + strand, within OKGIIK_00315at 75.909 kb on - strand, within OKGIIK_00315at 76.076 kb on + strand, within OKGIIK_00315at 76.146 kb on + strand, within OKGIIK_00315at 76.146 kb on + strand, within OKGIIK_00315at 76.147 kb on - strand, within OKGIIK_00315at 76.147 kb on - strand, within OKGIIK_00315at 76.203 kb on + strand, within OKGIIK_00315at 76.204 kb on - strand, within OKGIIK_00315at 76.204 kb on - strand, within OKGIIK_00315at 76.217 kb on + strand, within OKGIIK_00315at 76.217 kb on + strand, within OKGIIK_00315at 76.217 kb on + strand, within OKGIIK_00315at 76.217 kb on + strand, within OKGIIK_00315at 76.217 kb on + strand, within OKGIIK_00315at 76.218 kb on - strand, within OKGIIK_00315at 76.218 kb on - strand, within OKGIIK_00315at 76.218 kb on - strand, within OKGIIK_00315at 76.218 kb on - strand, within OKGIIK_00315at 76.218 kb on - strand, within OKGIIK_00315at 76.218 kb on - strand, within OKGIIK_00315at 76.379 kb on + strand, within OKGIIK_00315

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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73,646 + OKGIIK_00305 0.43 +2.1
73,646 + OKGIIK_00305 0.43 +0.1
73,646 + OKGIIK_00305 0.43 -0.4
73,646 + OKGIIK_00305 0.43 -1.8
73,646 + OKGIIK_00305 0.43 -0.3
73,646 + OKGIIK_00305 0.43 +0.4
73,647 - OKGIIK_00305 0.43 -0.5
73,647 - OKGIIK_00305 0.43 -0.9
73,647 - OKGIIK_00305 0.43 +0.1
73,647 - OKGIIK_00305 0.43 -0.9
73,647 - OKGIIK_00305 0.43 +0.4
73,647 - OKGIIK_00305 0.43 -2.6
73,710 + OKGIIK_00305 0.48 -2.5
73,711 - OKGIIK_00305 0.48 +0.9
74,139 - OKGIIK_00305 0.78 +0.2
74,219 + OKGIIK_00305 0.84 -0.1
74,549 + +0.5
74,549 + -0.3
74,549 + -0.8
74,549 + -0.9
74,549 + +1.1
74,549 + +0.8
74,550 - -0.0
74,550 - -2.1
74,550 - +0.1
74,550 - +0.3
74,550 - +1.3
74,550 - -0.2
74,609 + -0.2
74,609 + -1.6
74,609 + -0.3
74,609 + -0.3
74,609 + -0.8
74,609 + -1.1
74,610 - +1.4
74,610 - -0.9
74,690 + OKGIIK_00310 0.11 +0.7
74,765 + OKGIIK_00310 0.19 -1.5
74,765 + OKGIIK_00310 0.19 +0.2
74,765 + OKGIIK_00310 0.19 +0.2
74,765 + OKGIIK_00310 0.19 +1.7
74,765 + OKGIIK_00310 0.19 +0.8
74,766 - OKGIIK_00310 0.19 -2.5
74,766 - OKGIIK_00310 0.19 +0.8
74,766 - OKGIIK_00310 0.19 -0.3
74,766 - OKGIIK_00310 0.19 -0.3
74,766 - OKGIIK_00310 0.19 -0.7
74,766 - OKGIIK_00310 0.19 -1.7
74,766 - OKGIIK_00310 0.19 +0.2
74,766 - OKGIIK_00310 0.19 -1.3
74,766 - OKGIIK_00310 0.19 -1.4
74,766 - OKGIIK_00310 0.19 -0.3
74,766 - OKGIIK_00310 0.19 +0.8
74,766 - OKGIIK_00310 0.19 -0.9
74,766 - OKGIIK_00310 0.19 -0.4
74,780 + OKGIIK_00310 0.20 +0.3
74,780 + OKGIIK_00310 0.20 -0.5
74,780 + OKGIIK_00310 0.20 +0.9
74,781 - OKGIIK_00310 0.20 -0.4
74,915 + OKGIIK_00310 0.35 +1.5
74,915 + OKGIIK_00310 0.35 +0.1
74,915 + OKGIIK_00310 0.35 -0.3
74,915 + OKGIIK_00310 0.35 -1.2
74,916 - OKGIIK_00310 0.35 -1.5
74,916 - OKGIIK_00310 0.35 +0.5
74,966 + OKGIIK_00310 0.40 +0.1
74,967 - OKGIIK_00310 0.41 +1.3
74,967 - OKGIIK_00310 0.41 -0.8
74,967 - OKGIIK_00310 0.41 -0.3
75,203 + OKGIIK_00310 0.66 -1.1
75,203 + OKGIIK_00310 0.66 +0.5
75,203 + OKGIIK_00310 0.66 +0.4
75,203 + OKGIIK_00310 0.66 +0.1
75,203 + OKGIIK_00310 0.66 +0.0
75,204 - OKGIIK_00310 0.66 +1.8
75,204 - OKGIIK_00310 0.66 -0.8
75,204 - OKGIIK_00310 0.66 -2.3
75,204 - OKGIIK_00310 0.66 -1.5
75,204 - OKGIIK_00310 0.66 -0.5
75,204 - OKGIIK_00310 0.66 -0.4
75,347 + OKGIIK_00310 0.82 +1.4
75,347 + OKGIIK_00310 0.82 -1.1
75,348 - OKGIIK_00310 0.82 +1.9
75,348 - OKGIIK_00310 0.82 -1.3
75,395 + OKGIIK_00310 0.87 +0.1
75,416 + OKGIIK_00310 0.89 -0.7
75,417 - OKGIIK_00310 0.89 -0.2
75,417 - OKGIIK_00310 0.89 +1.2
75,737 + -1.1
75,760 - -0.1
75,807 + OKGIIK_00315 0.13 -0.2
75,808 - OKGIIK_00315 0.13 +0.7
75,808 - OKGIIK_00315 0.13 +0.6
75,808 - OKGIIK_00315 0.13 -1.3
75,846 + OKGIIK_00315 0.15 -2.3
75,846 + OKGIIK_00315 0.15 -1.1
75,846 + OKGIIK_00315 0.15 +0.3
75,847 - OKGIIK_00315 0.16 +0.9
75,847 - OKGIIK_00315 0.16 -0.9
75,847 - OKGIIK_00315 0.16 +0.7
75,861 + OKGIIK_00315 0.17 +0.7
75,861 + OKGIIK_00315 0.17 -1.4
75,861 + OKGIIK_00315 0.17 -1.7
75,862 - OKGIIK_00315 0.17 -1.7
75,862 - OKGIIK_00315 0.17 -2.4
75,862 - OKGIIK_00315 0.17 -0.9
75,862 - OKGIIK_00315 0.17 -1.1
75,862 - OKGIIK_00315 0.17 +0.7
75,870 + OKGIIK_00315 0.17 -0.2
75,870 + OKGIIK_00315 0.17 -0.5
75,870 + OKGIIK_00315 0.17 +0.8
75,871 - OKGIIK_00315 0.17 -0.0
75,876 + OKGIIK_00315 0.18 +0.3
75,876 + OKGIIK_00315 0.18 +0.2
75,877 - OKGIIK_00315 0.18 -2.5
75,877 - OKGIIK_00315 0.18 +0.7
75,877 - OKGIIK_00315 0.18 -1.7
75,877 - OKGIIK_00315 0.18 +0.3
75,908 + OKGIIK_00315 0.20 -1.3
75,909 - OKGIIK_00315 0.20 +1.6
76,076 + OKGIIK_00315 0.32 -1.7
76,146 + OKGIIK_00315 0.37 +0.5
76,146 + OKGIIK_00315 0.37 -0.6
76,147 - OKGIIK_00315 0.37 -0.6
76,147 - OKGIIK_00315 0.37 -0.2
76,203 + OKGIIK_00315 0.41 -4.0
76,204 - OKGIIK_00315 0.41 +0.7
76,204 - OKGIIK_00315 0.41 -0.8
76,217 + OKGIIK_00315 0.42 +0.1
76,217 + OKGIIK_00315 0.42 -1.0
76,217 + OKGIIK_00315 0.42 -0.5
76,217 + OKGIIK_00315 0.42 +2.0
76,217 + OKGIIK_00315 0.42 -0.6
76,218 - OKGIIK_00315 0.42 +0.7
76,218 - OKGIIK_00315 0.42 -1.9
76,218 - OKGIIK_00315 0.42 -0.4
76,218 - OKGIIK_00315 0.42 -0.1
76,218 - OKGIIK_00315 0.42 -0.2
76,218 - OKGIIK_00315 0.42 -2.4
76,379 + OKGIIK_00315 0.54 +0.1

Or see this region's nucleotide sequence