Strain Fitness in Pseudomonas sp. DMC3 around GFF4978

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4977 and GFF4978 overlap by 4 nucleotidesGFF4978 and GFF4979 are separated by 28 nucleotidesGFF4979 and GFF4980 are separated by 9 nucleotidesGFF4980 and GFF4981 are separated by 101 nucleotides GFF4977 - Carbamoyl-phosphate synthase large chain, at 82,303 to 85,524 GFF4977 GFF4978 - Transcription elongation factor GreA, at 85,521 to 86,003 GFF4978 GFF4979 - hypothetical protein, at 86,032 to 86,436 GFF4979 GFF4980 - RNA-binding protein, at 86,446 to 86,754 GFF4980 GFF4981 - Ribosomal RNA large subunit methyltransferase E, at 86,856 to 87,485 GFF4981 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 85.502 kb on + strandat 85.502 kb on + strandat 85.502 kb on + strandat 85.528 kb on + strandat 85.529 kb on - strandat 85.529 kb on - strandat 85.536 kb on + strandat 85.537 kb on - strandat 85.668 kb on + strand, within GFF4978at 85.668 kb on + strand, within GFF4978at 85.669 kb on - strand, within GFF4978at 85.669 kb on - strand, within GFF4978at 85.710 kb on - strand, within GFF4978at 85.839 kb on + strand, within GFF4978at 85.839 kb on + strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 85.840 kb on - strand, within GFF4978at 86.072 kb on + strandat 86.073 kb on - strand, within GFF4979at 86.073 kb on - strand, within GFF4979at 86.073 kb on - strand, within GFF4979at 86.073 kb on - strand, within GFF4979at 86.085 kb on + strand, within GFF4979at 86.085 kb on + strand, within GFF4979at 86.087 kb on + strand, within GFF4979at 86.087 kb on + strand, within GFF4979at 86.087 kb on + strand, within GFF4979at 86.087 kb on + strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.088 kb on - strand, within GFF4979at 86.216 kb on + strand, within GFF4979at 86.216 kb on + strand, within GFF4979at 86.217 kb on - strand, within GFF4979at 86.240 kb on + strand, within GFF4979at 86.240 kb on + strand, within GFF4979at 86.240 kb on + strand, within GFF4979at 86.240 kb on + strand, within GFF4979at 86.281 kb on + strand, within GFF4979at 86.281 kb on + strand, within GFF4979at 86.281 kb on + strand, within GFF4979at 86.282 kb on - strand, within GFF4979at 86.296 kb on + strand, within GFF4979at 86.296 kb on + strand, within GFF4979at 86.296 kb on + strand, within GFF4979at 86.296 kb on + strand, within GFF4979at 86.297 kb on - strand, within GFF4979at 86.297 kb on - strand, within GFF4979at 86.297 kb on - strand, within GFF4979at 86.342 kb on + strand, within GFF4979at 86.342 kb on + strand, within GFF4979at 86.342 kb on + strand, within GFF4979at 86.342 kb on + strand, within GFF4979at 86.343 kb on - strand, within GFF4979at 86.343 kb on - strand, within GFF4979at 86.343 kb on - strand, within GFF4979at 86.501 kb on + strand, within GFF4980at 86.501 kb on + strand, within GFF4980at 86.723 kb on + strand, within GFF4980at 86.723 kb on + strand, within GFF4980at 86.754 kb on + strandat 86.826 kb on + strandat 86.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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85,502 + +0.7
85,502 + -0.5
85,502 + +0.2
85,528 + -2.1
85,529 - -0.2
85,529 - -1.2
85,536 + -0.8
85,537 - +0.8
85,668 + GFF4978 0.30 -0.4
85,668 + GFF4978 0.30 +0.2
85,669 - GFF4978 0.31 -0.4
85,669 - GFF4978 0.31 -0.4
85,710 - GFF4978 0.39 -1.0
85,839 + GFF4978 0.66 -1.8
85,839 + GFF4978 0.66 -1.2
85,840 - GFF4978 0.66 -0.8
85,840 - GFF4978 0.66 -0.4
85,840 - GFF4978 0.66 -0.8
85,840 - GFF4978 0.66 -1.2
85,840 - GFF4978 0.66 -1.4
86,072 + -0.2
86,073 - GFF4979 0.10 -0.5
86,073 - GFF4979 0.10 -0.5
86,073 - GFF4979 0.10 +0.2
86,073 - GFF4979 0.10 +0.3
86,085 + GFF4979 0.13 +0.1
86,085 + GFF4979 0.13 +0.7
86,087 + GFF4979 0.14 -0.9
86,087 + GFF4979 0.14 +0.7
86,087 + GFF4979 0.14 +1.3
86,087 + GFF4979 0.14 +0.2
86,088 - GFF4979 0.14 -0.6
86,088 - GFF4979 0.14 -0.2
86,088 - GFF4979 0.14 -0.5
86,088 - GFF4979 0.14 +0.6
86,088 - GFF4979 0.14 -0.2
86,088 - GFF4979 0.14 -0.1
86,216 + GFF4979 0.45 -0.4
86,216 + GFF4979 0.45 -0.3
86,217 - GFF4979 0.46 -0.1
86,240 + GFF4979 0.51 -0.0
86,240 + GFF4979 0.51 +0.0
86,240 + GFF4979 0.51 +0.2
86,240 + GFF4979 0.51 +0.2
86,281 + GFF4979 0.61 +0.0
86,281 + GFF4979 0.61 +1.0
86,281 + GFF4979 0.61 -0.2
86,282 - GFF4979 0.62 +0.6
86,296 + GFF4979 0.65 -0.1
86,296 + GFF4979 0.65 +0.3
86,296 + GFF4979 0.65 +0.3
86,296 + GFF4979 0.65 -0.6
86,297 - GFF4979 0.65 +0.2
86,297 - GFF4979 0.65 +0.3
86,297 - GFF4979 0.65 -0.2
86,342 + GFF4979 0.77 +0.2
86,342 + GFF4979 0.77 +0.4
86,342 + GFF4979 0.77 +1.0
86,342 + GFF4979 0.77 -1.0
86,343 - GFF4979 0.77 -0.4
86,343 - GFF4979 0.77 -1.2
86,343 - GFF4979 0.77 -1.0
86,501 + GFF4980 0.18 -1.0
86,501 + GFF4980 0.18 +1.0
86,723 + GFF4980 0.90 -0.9
86,723 + GFF4980 0.90 +0.1
86,754 + -0.6
86,826 + +0.6
86,826 + +0.3

Or see this region's nucleotide sequence