Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF487 and GFF488 are separated by 180 nucleotides GFF488 and GFF489 are separated by 557 nucleotides
GFF487 - HTH-type transcriptional regulator YjiE, at 535,624 to 536,532
GFF487
GFF488 - Aspartate ammonia-lyase, at 536,713 to 538,137
GFF488
GFF489 - Amino-acid carrier protein AlsT, at 538,695 to 540,143
GFF489
Position (kb) 536
537
538
539 Strain fitness (log2 ratio) -2
-1
0
1 at 535.859 kb on + strand, within GFF487 at 535.860 kb on - strand, within GFF487 at 535.860 kb on - strand, within GFF487 at 535.935 kb on - strand, within GFF487 at 536.084 kb on + strand, within GFF487 at 536.084 kb on + strand, within GFF487 at 536.084 kb on + strand, within GFF487 at 536.085 kb on - strand, within GFF487 at 536.384 kb on - strand, within GFF487 at 536.384 kb on - strand, within GFF487 at 536.600 kb on + strand at 536.615 kb on + strand at 536.659 kb on + strand at 536.660 kb on - strand at 536.710 kb on - strand at 536.783 kb on - strand at 536.783 kb on - strand at 536.783 kb on - strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.785 kb on + strand at 536.786 kb on - strand at 536.786 kb on - strand at 537.101 kb on - strand, within GFF488 at 537.106 kb on + strand, within GFF488 at 537.107 kb on - strand, within GFF488 at 537.504 kb on - strand, within GFF488 at 537.970 kb on + strand, within GFF488 at 537.971 kb on - strand, within GFF488 at 537.971 kb on - strand, within GFF488 at 538.153 kb on + strand at 538.154 kb on - strand at 538.154 kb on - strand at 538.154 kb on - strand at 538.154 kb on - strand at 538.179 kb on + strand at 538.243 kb on - strand at 538.260 kb on + strand at 538.260 kb on + strand at 538.260 kb on + strand at 538.260 kb on + strand at 538.261 kb on - strand at 538.261 kb on - strand at 538.261 kb on - strand at 538.261 kb on - strand at 538.275 kb on + strand at 538.275 kb on + strand at 538.275 kb on + strand at 538.275 kb on + strand at 538.275 kb on + strand at 538.275 kb on + strand at 538.276 kb on - strand at 538.307 kb on - strand at 538.343 kb on - strand at 538.343 kb on - strand at 538.345 kb on + strand at 538.345 kb on + strand at 538.345 kb on + strand at 538.345 kb on + strand at 538.345 kb on + strand at 538.345 kb on + strand at 538.346 kb on - strand at 538.353 kb on + strand at 538.353 kb on + strand at 538.354 kb on - strand at 538.379 kb on + strand at 538.380 kb on - strand at 538.380 kb on - strand at 538.406 kb on + strand at 538.407 kb on - strand at 538.416 kb on - strand at 538.466 kb on - strand at 538.466 kb on - strand at 538.496 kb on - strand at 538.497 kb on + strand at 538.497 kb on + strand at 538.498 kb on - strand at 538.563 kb on + strand at 538.564 kb on - strand at 538.564 kb on - strand at 538.564 kb on - strand at 538.564 kb on - strand at 538.564 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.636 kb on + strand at 538.637 kb on - strand at 538.689 kb on - strand at 538.732 kb on + strand at 538.733 kb on - strand at 538.733 kb on - strand at 538.733 kb on - strand at 538.733 kb on - strand at 538.761 kb on - strand at 538.764 kb on + strand at 538.764 kb on + strand at 538.764 kb on + strand at 538.764 kb on + strand at 538.765 kb on - strand at 538.765 kb on - strand at 538.765 kb on - strand at 538.765 kb on - strand at 538.765 kb on - strand at 538.991 kb on + strand, within GFF489 at 538.992 kb on - strand, within GFF489 at 539.031 kb on + strand, within GFF489 at 539.031 kb on + strand, within GFF489 at 539.032 kb on - strand, within GFF489 at 539.032 kb on - strand, within GFF489 at 539.076 kb on + strand, within GFF489 at 539.077 kb on - strand, within GFF489 at 539.079 kb on + strand, within GFF489 at 539.079 kb on + strand, within GFF489 at 539.079 kb on + strand, within GFF489 at 539.079 kb on + strand, within GFF489 at 539.079 kb on + strand, within GFF489 at 539.080 kb on - strand, within GFF489 at 539.080 kb on - strand, within GFF489 at 539.080 kb on - strand, within GFF489 at 539.080 kb on - strand, within GFF489 at 539.080 kb on - strand, within GFF489 at 539.080 kb on - strand, within GFF489 at 539.080 kb on - strand, within GFF489
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 535,859 + GFF487 0.26 -0.4 535,860 - GFF487 0.26 -0.6 535,860 - GFF487 0.26 +0.6 535,935 - GFF487 0.34 -1.4 536,084 + GFF487 0.51 +0.3 536,084 + GFF487 0.51 -0.1 536,084 + GFF487 0.51 -0.1 536,085 - GFF487 0.51 -0.3 536,384 - GFF487 0.84 -0.3 536,384 - GFF487 0.84 +0.4 536,600 + -1.3 536,615 + +0.1 536,659 + -1.4 536,660 - +0.4 536,710 - -0.4 536,783 - +0.2 536,783 - -0.9 536,783 - -0.8 536,785 + -0.4 536,785 + -0.6 536,785 + -0.2 536,785 + +0.5 536,785 + +0.3 536,785 + -1.1 536,785 + -0.1 536,786 - -0.9 536,786 - -1.2 537,101 - GFF488 0.27 -0.3 537,106 + GFF488 0.28 +0.9 537,107 - GFF488 0.28 +1.1 537,504 - GFF488 0.56 -2.1 537,970 + GFF488 0.88 -1.5 537,971 - GFF488 0.88 -0.1 537,971 - GFF488 0.88 +0.3 538,153 + -1.3 538,154 - -0.0 538,154 - +0.0 538,154 - +0.1 538,154 - -0.6 538,179 + -0.8 538,243 - +0.0 538,260 + -1.3 538,260 + -0.6 538,260 + +0.6 538,260 + -0.2 538,261 - +1.2 538,261 - -2.2 538,261 - -0.2 538,261 - -1.1 538,275 + -1.0 538,275 + -0.4 538,275 + +0.4 538,275 + +0.3 538,275 + +0.0 538,275 + -0.4 538,276 - -0.2 538,307 - -1.2 538,343 - +0.5 538,343 - -1.0 538,345 + +0.4 538,345 + -0.4 538,345 + -0.5 538,345 + -0.4 538,345 + -0.6 538,345 + -0.1 538,346 - -1.0 538,353 + -1.1 538,353 + -0.2 538,354 - -0.4 538,379 + -0.3 538,380 - +0.2 538,380 - -0.5 538,406 + +0.2 538,407 - +0.1 538,416 - -0.3 538,466 - +1.2 538,466 - +0.4 538,496 - +0.4 538,497 + +0.8 538,497 + -0.2 538,498 - +0.1 538,563 + -0.4 538,564 - +0.8 538,564 - -0.4 538,564 - -0.9 538,564 - -0.3 538,564 - -0.7 538,567 - -0.1 538,567 - +0.0 538,567 - +0.1 538,567 - +0.2 538,636 + -1.7 538,637 - -2.0 538,689 - -0.2 538,732 + -0.5 538,733 - -0.1 538,733 - +0.1 538,733 - -0.3 538,733 - -0.5 538,761 - -0.3 538,764 + -0.3 538,764 + -0.9 538,764 + -0.1 538,764 + -0.7 538,765 - +0.8 538,765 - -0.1 538,765 - +0.2 538,765 - +0.1 538,765 - -0.3 538,991 + GFF489 0.20 -0.9 538,992 - GFF489 0.20 +0.1 539,031 + GFF489 0.23 -0.2 539,031 + GFF489 0.23 +0.6 539,032 - GFF489 0.23 -0.1 539,032 - GFF489 0.23 -0.4 539,076 + GFF489 0.26 -0.1 539,077 - GFF489 0.26 +0.9 539,079 + GFF489 0.27 +0.2 539,079 + GFF489 0.27 +0.1 539,079 + GFF489 0.27 +0.1 539,079 + GFF489 0.27 +0.2 539,079 + GFF489 0.27 -0.5 539,080 - GFF489 0.27 -0.5 539,080 - GFF489 0.27 -0.2 539,080 - GFF489 0.27 +0.0 539,080 - GFF489 0.27 +0.2 539,080 - GFF489 0.27 +0.2 539,080 - GFF489 0.27 +0.1 539,080 - GFF489 0.27 -0.9
Or see this region's nucleotide sequence