Strain Fitness in Pseudomonas sp. DMC3 around GFF4789

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4787 and GFF4788 are separated by 90 nucleotidesGFF4788 and GFF4789 are separated by 1 nucleotidesGFF4789 and GFF4790 are separated by 186 nucleotides GFF4787 - hypothetical protein, at 48,264 to 48,890 GFF4787 GFF4788 - hypothetical protein, at 48,981 to 49,751 GFF4788 GFF4789 - Threonine efflux protein, at 49,753 to 50,391 GFF4789 GFF4790 - Putative dipeptidase, at 50,578 to 52,317 GFF4790 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.781 kb on - strand, within GFF4787at 48.802 kb on + strand, within GFF4787at 48.802 kb on + strand, within GFF4787at 48.876 kb on + strandat 48.876 kb on + strandat 48.877 kb on - strandat 48.877 kb on - strandat 48.957 kb on + strandat 48.963 kb on + strandat 48.963 kb on + strandat 48.963 kb on + strandat 48.964 kb on - strandat 48.964 kb on - strandat 48.988 kb on + strandat 48.988 kb on + strandat 48.989 kb on - strandat 48.989 kb on - strandat 49.019 kb on - strandat 49.019 kb on - strandat 49.128 kb on + strand, within GFF4788at 49.128 kb on + strand, within GFF4788at 49.128 kb on + strand, within GFF4788at 49.129 kb on - strand, within GFF4788at 49.129 kb on - strand, within GFF4788at 49.160 kb on + strand, within GFF4788at 49.170 kb on + strand, within GFF4788at 49.170 kb on + strand, within GFF4788at 49.170 kb on + strand, within GFF4788at 49.171 kb on - strand, within GFF4788at 49.171 kb on - strand, within GFF4788at 49.171 kb on - strand, within GFF4788at 49.171 kb on - strand, within GFF4788at 49.206 kb on + strand, within GFF4788at 49.206 kb on + strand, within GFF4788at 49.206 kb on + strand, within GFF4788at 49.206 kb on + strand, within GFF4788at 49.206 kb on + strand, within GFF4788at 49.260 kb on + strand, within GFF4788at 49.260 kb on + strand, within GFF4788at 49.260 kb on + strand, within GFF4788at 49.350 kb on + strand, within GFF4788at 49.350 kb on + strand, within GFF4788at 49.350 kb on + strand, within GFF4788at 49.350 kb on + strand, within GFF4788at 49.350 kb on + strand, within GFF4788at 49.350 kb on + strand, within GFF4788at 49.350 kb on + strand, within GFF4788at 49.351 kb on - strand, within GFF4788at 49.351 kb on - strand, within GFF4788at 49.351 kb on - strand, within GFF4788at 49.351 kb on - strand, within GFF4788at 49.351 kb on - strand, within GFF4788at 49.351 kb on - strand, within GFF4788at 49.351 kb on - strand, within GFF4788at 49.477 kb on - strand, within GFF4788at 49.566 kb on + strand, within GFF4788at 49.610 kb on - strand, within GFF4788at 49.765 kb on + strandat 49.766 kb on - strandat 49.766 kb on - strandat 49.766 kb on - strandat 49.927 kb on + strand, within GFF4789at 49.927 kb on + strand, within GFF4789at 49.927 kb on + strand, within GFF4789at 49.927 kb on + strand, within GFF4789at 49.928 kb on - strand, within GFF4789at 49.928 kb on - strand, within GFF4789at 49.928 kb on - strand, within GFF4789at 49.928 kb on - strand, within GFF4789at 49.928 kb on - strand, within GFF4789at 49.929 kb on + strand, within GFF4789at 49.930 kb on - strand, within GFF4789at 49.930 kb on - strand, within GFF4789at 49.930 kb on - strand, within GFF4789at 50.005 kb on + strand, within GFF4789at 50.005 kb on + strand, within GFF4789at 50.005 kb on + strand, within GFF4789at 50.006 kb on - strand, within GFF4789at 50.006 kb on - strand, within GFF4789at 50.006 kb on - strand, within GFF4789at 50.006 kb on - strand, within GFF4789at 50.006 kb on - strand, within GFF4789at 50.006 kb on - strand, within GFF4789at 50.006 kb on - strand, within GFF4789at 50.006 kb on - strand, within GFF4789at 50.014 kb on + strand, within GFF4789at 50.224 kb on + strand, within GFF4789at 50.224 kb on + strand, within GFF4789at 50.225 kb on - strand, within GFF4789at 50.225 kb on - strand, within GFF4789at 50.225 kb on - strand, within GFF4789at 50.390 kb on - strandat 50.390 kb on - strandat 50.506 kb on + strandat 50.506 kb on + strandat 50.506 kb on + strandat 50.542 kb on + strandat 50.542 kb on + strandat 50.542 kb on + strandat 50.542 kb on + strandat 50.543 kb on - strandat 50.543 kb on - strandat 50.543 kb on - strandat 50.543 kb on - strandat 50.557 kb on + strandat 50.558 kb on - strandat 50.575 kb on + strandat 50.575 kb on + strandat 50.575 kb on + strandat 50.575 kb on + strandat 50.575 kb on + strandat 50.576 kb on - strandat 50.576 kb on - strandat 50.576 kb on - strandat 50.576 kb on - strandat 50.576 kb on - strandat 50.576 kb on - strandat 50.576 kb on - strandat 50.576 kb on - strandat 50.727 kb on + strandat 50.727 kb on + strandat 50.728 kb on - strandat 50.728 kb on - strandat 50.860 kb on + strand, within GFF4790at 50.860 kb on + strand, within GFF4790at 50.860 kb on + strand, within GFF4790at 50.860 kb on + strand, within GFF4790at 50.861 kb on - strand, within GFF4790at 50.861 kb on - strand, within GFF4790at 50.863 kb on - strand, within GFF4790at 51.044 kb on - strand, within GFF4790at 51.044 kb on - strand, within GFF4790at 51.190 kb on + strand, within GFF4790at 51.190 kb on + strand, within GFF4790at 51.190 kb on + strand, within GFF4790at 51.190 kb on + strand, within GFF4790at 51.190 kb on + strand, within GFF4790at 51.190 kb on + strand, within GFF4790at 51.191 kb on - strand, within GFF4790at 51.191 kb on - strand, within GFF4790at 51.283 kb on - strand, within GFF4790at 51.283 kb on - strand, within GFF4790at 51.337 kb on + strand, within GFF4790at 51.337 kb on + strand, within GFF4790at 51.337 kb on + strand, within GFF4790at 51.338 kb on - strand, within GFF4790at 51.341 kb on - strand, within GFF4790at 51.341 kb on - strand, within GFF4790at 51.341 kb on - strand, within GFF4790at 51.367 kb on + strand, within GFF4790at 51.367 kb on + strand, within GFF4790at 51.367 kb on + strand, within GFF4790at 51.367 kb on + strand, within GFF4790at 51.368 kb on - strand, within GFF4790at 51.368 kb on - strand, within GFF4790

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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48,781 - GFF4787 0.82 +0.2
48,802 + GFF4787 0.86 -0.6
48,802 + GFF4787 0.86 +1.1
48,876 + -0.0
48,876 + +0.2
48,877 - +2.7
48,877 - -0.0
48,957 + +0.3
48,963 + -0.1
48,963 + -0.6
48,963 + -0.7
48,964 - -0.0
48,964 - -0.2
48,988 + -1.9
48,988 + +0.4
48,989 - +0.2
48,989 - -0.2
49,019 - -0.9
49,019 - +0.0
49,128 + GFF4788 0.19 +0.4
49,128 + GFF4788 0.19 +0.2
49,128 + GFF4788 0.19 -1.0
49,129 - GFF4788 0.19 -0.8
49,129 - GFF4788 0.19 -0.6
49,160 + GFF4788 0.23 -0.0
49,170 + GFF4788 0.25 -0.2
49,170 + GFF4788 0.25 -0.3
49,170 + GFF4788 0.25 +1.6
49,171 - GFF4788 0.25 +0.3
49,171 - GFF4788 0.25 -0.9
49,171 - GFF4788 0.25 -0.3
49,171 - GFF4788 0.25 -0.3
49,206 + GFF4788 0.29 -0.2
49,206 + GFF4788 0.29 -0.1
49,206 + GFF4788 0.29 +1.2
49,206 + GFF4788 0.29 +0.0
49,206 + GFF4788 0.29 -0.7
49,260 + GFF4788 0.36 -0.4
49,260 + GFF4788 0.36 -1.9
49,260 + GFF4788 0.36 -0.2
49,350 + GFF4788 0.48 -0.1
49,350 + GFF4788 0.48 +0.8
49,350 + GFF4788 0.48 +0.3
49,350 + GFF4788 0.48 -0.2
49,350 + GFF4788 0.48 +0.3
49,350 + GFF4788 0.48 -1.6
49,350 + GFF4788 0.48 +0.1
49,351 - GFF4788 0.48 -0.4
49,351 - GFF4788 0.48 -1.2
49,351 - GFF4788 0.48 +0.4
49,351 - GFF4788 0.48 +0.3
49,351 - GFF4788 0.48 -0.4
49,351 - GFF4788 0.48 -0.0
49,351 - GFF4788 0.48 +0.4
49,477 - GFF4788 0.64 -0.1
49,566 + GFF4788 0.76 -0.5
49,610 - GFF4788 0.82 -0.2
49,765 + +0.4
49,766 - -0.1
49,766 - -0.2
49,766 - -0.3
49,927 + GFF4789 0.27 -0.9
49,927 + GFF4789 0.27 +0.5
49,927 + GFF4789 0.27 +0.0
49,927 + GFF4789 0.27 -1.5
49,928 - GFF4789 0.27 +0.6
49,928 - GFF4789 0.27 +0.7
49,928 - GFF4789 0.27 +0.8
49,928 - GFF4789 0.27 -0.0
49,928 - GFF4789 0.27 +0.1
49,929 + GFF4789 0.28 -0.8
49,930 - GFF4789 0.28 -0.7
49,930 - GFF4789 0.28 -0.4
49,930 - GFF4789 0.28 -0.1
50,005 + GFF4789 0.39 -0.8
50,005 + GFF4789 0.39 +0.8
50,005 + GFF4789 0.39 -0.1
50,006 - GFF4789 0.40 -0.6
50,006 - GFF4789 0.40 +0.2
50,006 - GFF4789 0.40 +0.3
50,006 - GFF4789 0.40 +0.1
50,006 - GFF4789 0.40 -0.9
50,006 - GFF4789 0.40 -0.8
50,006 - GFF4789 0.40 -0.4
50,006 - GFF4789 0.40 -0.1
50,014 + GFF4789 0.41 -0.2
50,224 + GFF4789 0.74 -0.0
50,224 + GFF4789 0.74 -0.0
50,225 - GFF4789 0.74 -1.0
50,225 - GFF4789 0.74 -0.6
50,225 - GFF4789 0.74 -1.6
50,390 - -0.1
50,390 - -0.8
50,506 + +0.1
50,506 + -0.5
50,506 + +0.2
50,542 + -0.8
50,542 + -0.0
50,542 + +0.7
50,542 + +0.4
50,543 - -0.4
50,543 - +0.6
50,543 - +1.2
50,543 - +1.3
50,557 + -0.3
50,558 - +0.9
50,575 + -0.1
50,575 + +0.6
50,575 + +0.3
50,575 + +0.2
50,575 + -1.2
50,576 - -0.0
50,576 - -1.1
50,576 - +0.3
50,576 - -0.4
50,576 - +0.4
50,576 - -0.5
50,576 - -0.7
50,576 - +0.1
50,727 + -0.1
50,727 + +0.2
50,728 - +0.6
50,728 - +2.0
50,860 + GFF4790 0.16 -1.4
50,860 + GFF4790 0.16 +0.2
50,860 + GFF4790 0.16 +0.6
50,860 + GFF4790 0.16 -1.1
50,861 - GFF4790 0.16 +0.6
50,861 - GFF4790 0.16 -0.4
50,863 - GFF4790 0.16 +0.5
51,044 - GFF4790 0.27 -0.9
51,044 - GFF4790 0.27 -0.1
51,190 + GFF4790 0.35 -1.2
51,190 + GFF4790 0.35 -1.0
51,190 + GFF4790 0.35 +0.2
51,190 + GFF4790 0.35 +1.6
51,190 + GFF4790 0.35 +0.6
51,190 + GFF4790 0.35 +0.9
51,191 - GFF4790 0.35 +0.1
51,191 - GFF4790 0.35 +0.6
51,283 - GFF4790 0.41 +0.6
51,283 - GFF4790 0.41 +0.2
51,337 + GFF4790 0.44 +0.2
51,337 + GFF4790 0.44 +0.4
51,337 + GFF4790 0.44 -0.1
51,338 - GFF4790 0.44 +0.2
51,341 - GFF4790 0.44 +0.4
51,341 - GFF4790 0.44 +0.3
51,341 - GFF4790 0.44 -1.0
51,367 + GFF4790 0.45 +0.8
51,367 + GFF4790 0.45 -0.8
51,367 + GFF4790 0.45 -1.2
51,367 + GFF4790 0.45 -0.2
51,368 - GFF4790 0.45 +0.2
51,368 - GFF4790 0.45 -0.0

Or see this region's nucleotide sequence