Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3992 and GFF3993 are separated by 130 nucleotides GFF3993 and GFF3994 overlap by 4 nucleotides GFF3994 and GFF3995 overlap by 4 nucleotides GFF3995 and GFF3996 are separated by 10 nucleotides
GFF3992 - hypothetical protein, at 251,997 to 252,566
GFF3992
GFF3993 - hypothetical protein, at 252,697 to 253,170
GFF3993
GFF3994 - hypothetical protein, at 253,167 to 253,616
GFF3994
GFF3995 - hypothetical protein, at 253,613 to 254,326
GFF3995
GFF3996 - hypothetical protein, at 254,337 to 254,816
GFF3996
Position (kb) 253
254 Strain fitness (log2 ratio) -2
-1
0
1 at 252.223 kb on + strand, within GFF3992 at 252.224 kb on - strand, within GFF3992 at 252.224 kb on - strand, within GFF3992 at 252.530 kb on + strand at 252.590 kb on - strand at 252.590 kb on - strand at 252.590 kb on - strand at 252.653 kb on + strand at 252.653 kb on + strand at 252.653 kb on + strand at 252.660 kb on + strand at 252.660 kb on + strand at 252.661 kb on - strand at 252.670 kb on + strand at 252.670 kb on + strand at 252.671 kb on - strand at 252.708 kb on + strand at 252.795 kb on + strand, within GFF3993 at 252.796 kb on - strand, within GFF3993 at 252.943 kb on + strand, within GFF3993 at 252.944 kb on - strand, within GFF3993 at 252.952 kb on - strand, within GFF3993 at 253.288 kb on - strand, within GFF3994 at 253.332 kb on + strand, within GFF3994 at 253.374 kb on + strand, within GFF3994 at 253.374 kb on + strand, within GFF3994 at 253.374 kb on + strand, within GFF3994 at 253.374 kb on + strand, within GFF3994 at 253.374 kb on + strand, within GFF3994 at 253.375 kb on - strand, within GFF3994 at 253.507 kb on - strand, within GFF3994 at 253.507 kb on - strand, within GFF3994 at 253.507 kb on - strand, within GFF3994 at 253.520 kb on + strand, within GFF3994 at 253.520 kb on + strand, within GFF3994 at 253.521 kb on - strand, within GFF3994 at 253.521 kb on - strand, within GFF3994 at 253.695 kb on + strand, within GFF3995 at 253.724 kb on + strand, within GFF3995 at 253.724 kb on + strand, within GFF3995 at 253.724 kb on + strand, within GFF3995 at 253.724 kb on + strand, within GFF3995 at 253.724 kb on + strand, within GFF3995 at 253.724 kb on + strand, within GFF3995 at 253.725 kb on - strand, within GFF3995 at 253.725 kb on - strand, within GFF3995 at 253.801 kb on + strand, within GFF3995 at 253.917 kb on + strand, within GFF3995 at 253.917 kb on + strand, within GFF3995 at 253.918 kb on - strand, within GFF3995 at 253.918 kb on - strand, within GFF3995 at 253.918 kb on - strand, within GFF3995 at 253.918 kb on - strand, within GFF3995 at 253.918 kb on - strand, within GFF3995 at 253.918 kb on - strand, within GFF3995 at 254.057 kb on + strand, within GFF3995 at 254.058 kb on - strand, within GFF3995 at 254.071 kb on + strand, within GFF3995 at 254.072 kb on - strand, within GFF3995 at 254.072 kb on - strand, within GFF3995 at 254.128 kb on + strand, within GFF3995 at 254.129 kb on - strand, within GFF3995 at 254.129 kb on - strand, within GFF3995 at 254.129 kb on - strand, within GFF3995 at 254.195 kb on + strand, within GFF3995 at 254.554 kb on - strand, within GFF3996
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 252,223 + GFF3992 0.40 -0.6 252,224 - GFF3992 0.40 +0.2 252,224 - GFF3992 0.40 +0.3 252,530 + +1.4 252,590 - +0.7 252,590 - -0.8 252,590 - +0.2 252,653 + -0.9 252,653 + -0.4 252,653 + +0.6 252,660 + -1.8 252,660 + -0.6 252,661 - -1.0 252,670 + -0.6 252,670 + +0.6 252,671 - -0.0 252,708 + -1.4 252,795 + GFF3993 0.21 +0.2 252,796 - GFF3993 0.21 -0.5 252,943 + GFF3993 0.52 -0.7 252,944 - GFF3993 0.52 +0.6 252,952 - GFF3993 0.54 +0.6 253,288 - GFF3994 0.27 +0.4 253,332 + GFF3994 0.37 -0.3 253,374 + GFF3994 0.46 +0.4 253,374 + GFF3994 0.46 -1.1 253,374 + GFF3994 0.46 +0.3 253,374 + GFF3994 0.46 +1.6 253,374 + GFF3994 0.46 -0.1 253,375 - GFF3994 0.46 -2.4 253,507 - GFF3994 0.76 +0.2 253,507 - GFF3994 0.76 +0.4 253,507 - GFF3994 0.76 -0.5 253,520 + GFF3994 0.78 +0.0 253,520 + GFF3994 0.78 -0.3 253,521 - GFF3994 0.79 +0.2 253,521 - GFF3994 0.79 -0.2 253,695 + GFF3995 0.11 +0.3 253,724 + GFF3995 0.16 +0.3 253,724 + GFF3995 0.16 +0.1 253,724 + GFF3995 0.16 -1.6 253,724 + GFF3995 0.16 -0.1 253,724 + GFF3995 0.16 -0.0 253,724 + GFF3995 0.16 -0.2 253,725 - GFF3995 0.16 -1.5 253,725 - GFF3995 0.16 -0.2 253,801 + GFF3995 0.26 -0.3 253,917 + GFF3995 0.43 +0.2 253,917 + GFF3995 0.43 -0.8 253,918 - GFF3995 0.43 -0.6 253,918 - GFF3995 0.43 +1.2 253,918 - GFF3995 0.43 -0.6 253,918 - GFF3995 0.43 -0.2 253,918 - GFF3995 0.43 -0.0 253,918 - GFF3995 0.43 +0.2 254,057 + GFF3995 0.62 -0.0 254,058 - GFF3995 0.62 +0.0 254,071 + GFF3995 0.64 +0.6 254,072 - GFF3995 0.64 +0.6 254,072 - GFF3995 0.64 +0.6 254,128 + GFF3995 0.72 -0.8 254,129 - GFF3995 0.72 -0.2 254,129 - GFF3995 0.72 -0.7 254,129 - GFF3995 0.72 +0.0 254,195 + GFF3995 0.82 +0.4 254,554 - GFF3996 0.45 -0.1
Or see this region's nucleotide sequence