Strain Fitness in Pseudomonas sp. DMC3 around GFF3307

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3306 and GFF3307 are separated by 24 nucleotidesGFF3307 and GFF3308 are separated by 151 nucleotides GFF3306 - Sensor histidine kinase RcsC, at 303,196 to 306,048 GFF3306 GFF3307 - Phosphoribosylamine--glycine ligase, at 306,073 to 307,368 GFF3307 GFF3308 - Bifunctional purine biosynthesis protein PurH, at 307,520 to 309,127 GFF3308 Position (kb) 306 307 308Strain fitness (log2 ratio) -3 -2 -1 0 1at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.093 kb on + strand, within GFF3306at 305.094 kb on - strand, within GFF3306at 305.094 kb on - strand, within GFF3306at 305.094 kb on - strand, within GFF3306at 305.394 kb on - strand, within GFF3306at 305.399 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.542 kb on + strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.543 kb on - strand, within GFF3306at 305.546 kb on + strand, within GFF3306at 305.547 kb on - strand, within GFF3306at 305.675 kb on + strand, within GFF3306at 305.675 kb on + strand, within GFF3306at 305.950 kb on + strandat 305.951 kb on - strandat 305.951 kb on - strandat 305.951 kb on - strandat 305.989 kb on + strandat 305.989 kb on + strandat 305.989 kb on + strandat 305.990 kb on - strandat 306.005 kb on + strandat 306.005 kb on + strandat 306.006 kb on - strandat 306.006 kb on - strandat 306.006 kb on - strandat 306.006 kb on - strandat 306.007 kb on + strandat 306.008 kb on - strandat 306.008 kb on - strandat 306.008 kb on - strandat 306.008 kb on - strandat 306.008 kb on - strandat 306.074 kb on + strandat 306.074 kb on + strandat 306.075 kb on - strandat 306.131 kb on + strandat 306.131 kb on + strandat 306.170 kb on + strandat 306.171 kb on - strandat 306.223 kb on + strand, within GFF3307at 306.224 kb on - strand, within GFF3307at 306.224 kb on - strand, within GFF3307at 306.561 kb on - strand, within GFF3307at 306.576 kb on - strand, within GFF3307at 306.576 kb on - strand, within GFF3307at 306.576 kb on - strand, within GFF3307at 306.576 kb on - strand, within GFF3307at 306.675 kb on - strand, within GFF3307at 306.781 kb on - strand, within GFF3307at 307.390 kb on + strandat 307.391 kb on - strandat 307.391 kb on - strandat 307.391 kb on - strandat 307.502 kb on + strandat 307.518 kb on - strandat 307.550 kb on + strandat 307.550 kb on + strandat 307.550 kb on + strandat 307.550 kb on + strandat 307.550 kb on + strandat 307.551 kb on - strandat 307.551 kb on - strandat 307.833 kb on + strand, within GFF3308at 307.833 kb on + strand, within GFF3308at 307.834 kb on - strand, within GFF3308at 307.834 kb on - strand, within GFF3308at 307.834 kb on - strand, within GFF3308at 307.834 kb on - strand, within GFF3308at 307.834 kb on - strand, within GFF3308at 307.834 kb on - strand, within GFF3308at 308.027 kb on + strand, within GFF3308at 308.027 kb on + strand, within GFF3308at 308.027 kb on + strand, within GFF3308at 308.028 kb on - strand, within GFF3308at 308.028 kb on - strand, within GFF3308at 308.190 kb on + strand, within GFF3308at 308.202 kb on + strand, within GFF3308

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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305,093 + GFF3306 0.66 -2.8
305,093 + GFF3306 0.66 -0.0
305,093 + GFF3306 0.66 -2.3
305,093 + GFF3306 0.66 -1.5
305,093 + GFF3306 0.66 -0.9
305,093 + GFF3306 0.66 -1.8
305,094 - GFF3306 0.67 -1.3
305,094 - GFF3306 0.67 -0.2
305,094 - GFF3306 0.67 -0.2
305,394 - GFF3306 0.77 +0.2
305,399 + GFF3306 0.77 -0.8
305,542 + GFF3306 0.82 -2.3
305,542 + GFF3306 0.82 -0.4
305,542 + GFF3306 0.82 -1.4
305,542 + GFF3306 0.82 -0.9
305,542 + GFF3306 0.82 -0.1
305,542 + GFF3306 0.82 -0.6
305,543 - GFF3306 0.82 -1.0
305,543 - GFF3306 0.82 +0.2
305,543 - GFF3306 0.82 -1.0
305,543 - GFF3306 0.82 -0.7
305,543 - GFF3306 0.82 -2.1
305,543 - GFF3306 0.82 +0.3
305,543 - GFF3306 0.82 -0.8
305,546 + GFF3306 0.82 -0.0
305,547 - GFF3306 0.82 -0.6
305,675 + GFF3306 0.87 -0.2
305,675 + GFF3306 0.87 -0.8
305,950 + -0.8
305,951 - -1.3
305,951 - +0.4
305,951 - -0.2
305,989 + -0.4
305,989 + -0.9
305,989 + +1.0
305,990 - +0.6
306,005 + +0.2
306,005 + -0.7
306,006 - -0.2
306,006 - -0.1
306,006 - +0.5
306,006 - +0.3
306,007 + -0.7
306,008 - +1.5
306,008 - -0.6
306,008 - +0.1
306,008 - +0.4
306,008 - +0.8
306,074 + -1.1
306,074 + +0.8
306,075 - +0.0
306,131 + -1.0
306,131 + -1.8
306,170 + -1.5
306,171 - -1.8
306,223 + GFF3307 0.12 -1.3
306,224 - GFF3307 0.12 -1.3
306,224 - GFF3307 0.12 -2.0
306,561 - GFF3307 0.38 -1.6
306,576 - GFF3307 0.39 -1.5
306,576 - GFF3307 0.39 -1.0
306,576 - GFF3307 0.39 -1.0
306,576 - GFF3307 0.39 -1.3
306,675 - GFF3307 0.46 -2.0
306,781 - GFF3307 0.55 -1.5
307,390 + -1.6
307,391 - -0.1
307,391 - -2.4
307,391 - +0.3
307,502 + -2.8
307,518 - +1.0
307,550 + -1.9
307,550 + -2.9
307,550 + -1.0
307,550 + -0.8
307,550 + -2.7
307,551 - -1.8
307,551 - -1.0
307,833 + GFF3308 0.19 -2.3
307,833 + GFF3308 0.19 -1.8
307,834 - GFF3308 0.20 -1.6
307,834 - GFF3308 0.20 -2.0
307,834 - GFF3308 0.20 -1.8
307,834 - GFF3308 0.20 -2.7
307,834 - GFF3308 0.20 -1.6
307,834 - GFF3308 0.20 -1.6
308,027 + GFF3308 0.32 -1.8
308,027 + GFF3308 0.32 -1.0
308,027 + GFF3308 0.32 -2.6
308,028 - GFF3308 0.32 -3.0
308,028 - GFF3308 0.32 -1.3
308,190 + GFF3308 0.42 -3.0
308,202 + GFF3308 0.42 -2.2

Or see this region's nucleotide sequence