Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3002 and GFF3003 are separated by 32 nucleotides GFF3003 and GFF3004 overlap by 4 nucleotides GFF3004 and GFF3005 are separated by 110 nucleotides
GFF3002 - hypothetical protein, at 386,483 to 387,421
GFF3002
GFF3003 - hypothetical protein, at 387,454 to 388,005
GFF3003
GFF3004 - hypothetical protein, at 388,002 to 388,763
GFF3004
GFF3005 - hypothetical protein, at 388,874 to 389,173
GFF3005
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1 at 386.484 kb on + strand at 386.484 kb on + strand at 386.485 kb on - strand at 386.495 kb on + strand at 386.495 kb on + strand at 386.496 kb on - strand at 386.532 kb on + strand at 386.741 kb on + strand, within GFF3002 at 386.741 kb on + strand, within GFF3002 at 386.741 kb on + strand, within GFF3002 at 386.741 kb on + strand, within GFF3002 at 386.742 kb on - strand, within GFF3002 at 386.742 kb on - strand, within GFF3002 at 386.750 kb on + strand, within GFF3002 at 386.750 kb on + strand, within GFF3002 at 386.751 kb on - strand, within GFF3002 at 386.766 kb on + strand, within GFF3002 at 386.767 kb on - strand, within GFF3002 at 386.767 kb on - strand, within GFF3002 at 387.026 kb on + strand, within GFF3002 at 387.026 kb on + strand, within GFF3002 at 387.027 kb on - strand, within GFF3002 at 387.027 kb on - strand, within GFF3002 at 387.027 kb on - strand, within GFF3002 at 387.027 kb on - strand, within GFF3002 at 387.027 kb on - strand, within GFF3002 at 387.087 kb on + strand, within GFF3002 at 387.088 kb on - strand, within GFF3002 at 387.239 kb on + strand, within GFF3002 at 387.456 kb on - strand at 387.659 kb on + strand, within GFF3003 at 387.659 kb on + strand, within GFF3003 at 387.659 kb on + strand, within GFF3003 at 387.822 kb on - strand, within GFF3003 at 387.827 kb on + strand, within GFF3003 at 387.828 kb on - strand, within GFF3003 at 388.119 kb on - strand, within GFF3004 at 388.119 kb on - strand, within GFF3004 at 388.119 kb on - strand, within GFF3004 at 388.119 kb on - strand, within GFF3004 at 388.119 kb on - strand, within GFF3004 at 388.158 kb on + strand, within GFF3004 at 388.158 kb on + strand, within GFF3004 at 388.159 kb on - strand, within GFF3004 at 388.159 kb on - strand, within GFF3004 at 388.237 kb on + strand, within GFF3004 at 388.306 kb on + strand, within GFF3004 at 388.306 kb on + strand, within GFF3004 at 388.384 kb on - strand, within GFF3004 at 388.547 kb on - strand, within GFF3004 at 388.547 kb on - strand, within GFF3004 at 388.765 kb on + strand at 388.765 kb on + strand at 388.777 kb on - strand at 388.777 kb on - strand at 388.777 kb on - strand at 388.827 kb on + strand at 388.967 kb on + strand, within GFF3005 at 388.968 kb on - strand, within GFF3005 at 388.983 kb on - strand, within GFF3005
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 386,484 + +0.1 386,484 + -0.2 386,485 - -0.0 386,495 + -0.4 386,495 + +0.9 386,496 - -0.9 386,532 + -0.1 386,741 + GFF3002 0.27 -0.7 386,741 + GFF3002 0.27 -0.4 386,741 + GFF3002 0.27 -1.4 386,741 + GFF3002 0.27 +0.6 386,742 - GFF3002 0.28 -1.9 386,742 - GFF3002 0.28 -0.6 386,750 + GFF3002 0.28 +0.3 386,750 + GFF3002 0.28 +0.1 386,751 - GFF3002 0.29 +1.1 386,766 + GFF3002 0.30 -0.2 386,767 - GFF3002 0.30 -0.3 386,767 - GFF3002 0.30 -0.2 387,026 + GFF3002 0.58 -0.1 387,026 + GFF3002 0.58 +0.9 387,027 - GFF3002 0.58 +0.7 387,027 - GFF3002 0.58 +0.7 387,027 - GFF3002 0.58 -0.3 387,027 - GFF3002 0.58 +0.1 387,027 - GFF3002 0.58 -0.4 387,087 + GFF3002 0.64 +0.2 387,088 - GFF3002 0.64 -0.9 387,239 + GFF3002 0.81 -0.9 387,456 - +0.0 387,659 + GFF3003 0.37 +1.5 387,659 + GFF3003 0.37 -0.7 387,659 + GFF3003 0.37 -0.9 387,822 - GFF3003 0.67 -0.5 387,827 + GFF3003 0.68 -0.2 387,828 - GFF3003 0.68 -0.3 388,119 - GFF3004 0.15 +0.8 388,119 - GFF3004 0.15 -0.1 388,119 - GFF3004 0.15 +0.9 388,119 - GFF3004 0.15 -1.0 388,119 - GFF3004 0.15 -0.4 388,158 + GFF3004 0.20 -0.7 388,158 + GFF3004 0.20 +0.7 388,159 - GFF3004 0.21 -0.5 388,159 - GFF3004 0.21 -0.5 388,237 + GFF3004 0.31 -0.5 388,306 + GFF3004 0.40 +0.0 388,306 + GFF3004 0.40 +0.1 388,384 - GFF3004 0.50 +0.9 388,547 - GFF3004 0.72 -0.5 388,547 - GFF3004 0.72 -0.6 388,765 + +0.6 388,765 + -0.1 388,777 - +0.4 388,777 - +0.4 388,777 - +0.7 388,827 + -0.2 388,967 + GFF3005 0.31 -1.5 388,968 - GFF3005 0.31 +0.9 388,983 - GFF3005 0.36 +0.9
Or see this region's nucleotide sequence