Strain Fitness in Pseudomonas sp. DMC3 around GFF2260

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2258 and GFF2259 overlap by 4 nucleotidesGFF2259 and GFF2260 are separated by 18 nucleotidesGFF2260 and GFF2261 are separated by 514 nucleotides GFF2258 - Bicarbonate transport ATP-binding protein CmpD, at 31,222 to 32,010 GFF2258 GFF2259 - hypothetical protein, at 32,007 to 32,822 GFF2259 GFF2260 - hypothetical protein, at 32,841 to 33,908 GFF2260 GFF2261 - hypothetical protein, at 34,423 to 34,827 GFF2261 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 31.974 kb on - strandat 32.026 kb on + strandat 32.617 kb on + strand, within GFF2259at 32.617 kb on + strand, within GFF2259at 32.618 kb on - strand, within GFF2259at 32.741 kb on - strandat 32.754 kb on + strandat 32.842 kb on + strandat 32.843 kb on - strandat 32.843 kb on - strandat 32.843 kb on - strandat 32.843 kb on - strandat 32.843 kb on - strandat 32.872 kb on + strandat 32.872 kb on + strandat 32.873 kb on - strandat 33.534 kb on - strand, within GFF2260at 33.677 kb on - strand, within GFF2260at 33.697 kb on + strand, within GFF2260at 33.697 kb on + strand, within GFF2260at 33.733 kb on + strand, within GFF2260at 33.733 kb on + strand, within GFF2260at 33.776 kb on - strand, within GFF2260at 33.799 kb on + strand, within GFF2260at 33.799 kb on + strand, within GFF2260at 33.799 kb on + strand, within GFF2260at 33.799 kb on + strand, within GFF2260at 33.800 kb on - strand, within GFF2260at 33.800 kb on - strand, within GFF2260at 33.800 kb on - strand, within GFF2260at 33.800 kb on - strand, within GFF2260at 33.800 kb on - strand, within GFF2260at 33.802 kb on - strandat 33.814 kb on - strandat 33.897 kb on + strandat 33.898 kb on - strandat 33.998 kb on + strandat 33.999 kb on - strandat 34.119 kb on - strandat 34.245 kb on - strandat 34.245 kb on - strandat 34.245 kb on - strandat 34.426 kb on + strandat 34.427 kb on - strandat 34.428 kb on - strandat 34.440 kb on - strandat 34.483 kb on + strand, within GFF2261at 34.489 kb on + strand, within GFF2261at 34.490 kb on - strand, within GFF2261at 34.501 kb on + strand, within GFF2261at 34.501 kb on + strand, within GFF2261at 34.501 kb on + strand, within GFF2261at 34.501 kb on + strand, within GFF2261at 34.501 kb on + strand, within GFF2261at 34.501 kb on + strand, within GFF2261at 34.502 kb on - strand, within GFF2261at 34.502 kb on - strand, within GFF2261at 34.502 kb on - strand, within GFF2261at 34.502 kb on - strand, within GFF2261at 34.504 kb on + strand, within GFF2261at 34.504 kb on + strand, within GFF2261at 34.504 kb on + strand, within GFF2261at 34.504 kb on + strand, within GFF2261at 34.504 kb on + strand, within GFF2261at 34.505 kb on - strand, within GFF2261at 34.505 kb on - strand, within GFF2261at 34.505 kb on - strand, within GFF2261at 34.505 kb on - strand, within GFF2261at 34.505 kb on - strand, within GFF2261at 34.519 kb on + strand, within GFF2261at 34.519 kb on + strand, within GFF2261at 34.520 kb on - strand, within GFF2261at 34.520 kb on - strand, within GFF2261at 34.520 kb on - strand, within GFF2261at 34.520 kb on - strand, within GFF2261at 34.540 kb on + strand, within GFF2261at 34.541 kb on - strand, within GFF2261at 34.543 kb on + strand, within GFF2261at 34.543 kb on + strand, within GFF2261at 34.543 kb on + strand, within GFF2261at 34.561 kb on + strand, within GFF2261at 34.562 kb on - strand, within GFF2261at 34.562 kb on - strand, within GFF2261at 34.565 kb on - strand, within GFF2261at 34.582 kb on + strand, within GFF2261at 34.582 kb on + strand, within GFF2261at 34.582 kb on + strand, within GFF2261at 34.582 kb on + strand, within GFF2261at 34.583 kb on - strand, within GFF2261at 34.583 kb on - strand, within GFF2261at 34.583 kb on - strand, within GFF2261at 34.583 kb on - strand, within GFF2261at 34.583 kb on - strand, within GFF2261at 34.583 kb on - strand, within GFF2261at 34.585 kb on + strand, within GFF2261at 34.585 kb on + strand, within GFF2261at 34.585 kb on + strand, within GFF2261at 34.585 kb on + strand, within GFF2261at 34.586 kb on - strand, within GFF2261at 34.586 kb on - strand, within GFF2261at 34.601 kb on - strand, within GFF2261at 34.603 kb on + strand, within GFF2261at 34.604 kb on - strand, within GFF2261at 34.604 kb on - strand, within GFF2261at 34.622 kb on - strand, within GFF2261at 34.642 kb on + strand, within GFF2261at 34.642 kb on + strand, within GFF2261at 34.660 kb on + strand, within GFF2261at 34.661 kb on - strand, within GFF2261at 34.681 kb on + strand, within GFF2261at 34.774 kb on + strand, within GFF2261at 34.774 kb on + strand, within GFF2261at 34.774 kb on + strand, within GFF2261at 34.774 kb on + strand, within GFF2261at 34.774 kb on + strand, within GFF2261at 34.774 kb on + strand, within GFF2261at 34.775 kb on - strand, within GFF2261at 34.775 kb on - strand, within GFF2261at 34.775 kb on - strand, within GFF2261at 34.775 kb on - strand, within GFF2261at 34.775 kb on - strand, within GFF2261at 34.775 kb on - strand, within GFF2261at 34.801 kb on + strandat 34.802 kb on - strandat 34.802 kb on - strandat 34.825 kb on + strandat 34.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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31,974 - -0.4
32,026 + -1.0
32,617 + GFF2259 0.75 +0.2
32,617 + GFF2259 0.75 -0.3
32,618 - GFF2259 0.75 +0.2
32,741 - +0.2
32,754 + +0.9
32,842 + +0.1
32,843 - +0.2
32,843 - +0.6
32,843 - -0.6
32,843 - +0.1
32,843 - +0.3
32,872 + +0.2
32,872 + -2.0
32,873 - +0.6
33,534 - GFF2260 0.65 -0.2
33,677 - GFF2260 0.78 -0.4
33,697 + GFF2260 0.80 +0.0
33,697 + GFF2260 0.80 -0.5
33,733 + GFF2260 0.84 +0.1
33,733 + GFF2260 0.84 -0.3
33,776 - GFF2260 0.88 +0.1
33,799 + GFF2260 0.90 +0.9
33,799 + GFF2260 0.90 +0.2
33,799 + GFF2260 0.90 +0.0
33,799 + GFF2260 0.90 +0.1
33,800 - GFF2260 0.90 -0.4
33,800 - GFF2260 0.90 -0.4
33,800 - GFF2260 0.90 +1.1
33,800 - GFF2260 0.90 -0.9
33,800 - GFF2260 0.90 +0.4
33,802 - -0.2
33,814 - -1.0
33,897 + -1.2
33,898 - +0.7
33,998 + -0.7
33,999 - -0.8
34,119 - +0.3
34,245 - +0.3
34,245 - +0.2
34,245 - -0.7
34,426 + +0.0
34,427 - +0.5
34,428 - -0.3
34,440 - +0.6
34,483 + GFF2261 0.15 +0.5
34,489 + GFF2261 0.16 +0.2
34,490 - GFF2261 0.17 -0.6
34,501 + GFF2261 0.19 +0.1
34,501 + GFF2261 0.19 -0.5
34,501 + GFF2261 0.19 -0.5
34,501 + GFF2261 0.19 +0.9
34,501 + GFF2261 0.19 -0.4
34,501 + GFF2261 0.19 +0.0
34,502 - GFF2261 0.20 +0.2
34,502 - GFF2261 0.20 +0.2
34,502 - GFF2261 0.20 +0.2
34,502 - GFF2261 0.20 -1.2
34,504 + GFF2261 0.20 -1.2
34,504 + GFF2261 0.20 +0.2
34,504 + GFF2261 0.20 -0.3
34,504 + GFF2261 0.20 +0.4
34,504 + GFF2261 0.20 -1.4
34,505 - GFF2261 0.20 +0.5
34,505 - GFF2261 0.20 +0.2
34,505 - GFF2261 0.20 +0.7
34,505 - GFF2261 0.20 -0.1
34,505 - GFF2261 0.20 -0.8
34,519 + GFF2261 0.24 +1.3
34,519 + GFF2261 0.24 +0.0
34,520 - GFF2261 0.24 +0.1
34,520 - GFF2261 0.24 -0.6
34,520 - GFF2261 0.24 +1.3
34,520 - GFF2261 0.24 +0.6
34,540 + GFF2261 0.29 +0.1
34,541 - GFF2261 0.29 -0.2
34,543 + GFF2261 0.30 -0.5
34,543 + GFF2261 0.30 -1.4
34,543 + GFF2261 0.30 +0.3
34,561 + GFF2261 0.34 -0.3
34,562 - GFF2261 0.34 +0.7
34,562 - GFF2261 0.34 +0.8
34,565 - GFF2261 0.35 +0.5
34,582 + GFF2261 0.39 -1.2
34,582 + GFF2261 0.39 -0.4
34,582 + GFF2261 0.39 +0.0
34,582 + GFF2261 0.39 -0.1
34,583 - GFF2261 0.40 -0.2
34,583 - GFF2261 0.40 -0.4
34,583 - GFF2261 0.40 +0.1
34,583 - GFF2261 0.40 -0.3
34,583 - GFF2261 0.40 +0.7
34,583 - GFF2261 0.40 -0.4
34,585 + GFF2261 0.40 -0.2
34,585 + GFF2261 0.40 +1.9
34,585 + GFF2261 0.40 +0.1
34,585 + GFF2261 0.40 +0.1
34,586 - GFF2261 0.40 -0.1
34,586 - GFF2261 0.40 -0.9
34,601 - GFF2261 0.44 -1.2
34,603 + GFF2261 0.44 +0.4
34,604 - GFF2261 0.45 -1.1
34,604 - GFF2261 0.45 -0.5
34,622 - GFF2261 0.49 -0.2
34,642 + GFF2261 0.54 +0.2
34,642 + GFF2261 0.54 -2.2
34,660 + GFF2261 0.59 -0.4
34,661 - GFF2261 0.59 +0.3
34,681 + GFF2261 0.64 +0.3
34,774 + GFF2261 0.87 +1.6
34,774 + GFF2261 0.87 +0.5
34,774 + GFF2261 0.87 -0.7
34,774 + GFF2261 0.87 -0.2
34,774 + GFF2261 0.87 -0.8
34,774 + GFF2261 0.87 -0.1
34,775 - GFF2261 0.87 -0.2
34,775 - GFF2261 0.87 +0.4
34,775 - GFF2261 0.87 +0.4
34,775 - GFF2261 0.87 +0.0
34,775 - GFF2261 0.87 +0.1
34,775 - GFF2261 0.87 -0.1
34,801 + -0.7
34,802 - +1.6
34,802 - +0.1
34,825 + -0.7
34,907 - -1.1

Or see this region's nucleotide sequence