Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02378

Experiment: Ammonium Nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02377 and MPMX26_02378 overlap by 14 nucleotidesMPMX26_02378 and MPMX26_02379 are separated by 19 nucleotidesMPMX26_02379 and MPMX26_02380 are separated by 18 nucleotides MPMX26_02377: MPMX26_02377 - hypothetical protein, at 2,461,177 to 2,462,493 _02377 MPMX26_02378: MPMX26_02378 - Maleylpyruvate isomerase, at 2,462,480 to 2,463,118 _02378 MPMX26_02379: MPMX26_02379 - hypothetical protein, at 2,463,138 to 2,463,695 _02379 MPMX26_02380: MPMX26_02380 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A, at 2,463,714 to 2,464,418 _02380 Position (kb) 2462 2463 2464Strain fitness (log2 ratio) -1 0 1 2at 2462.015 kb on - strand, within MPMX26_02377at 2462.628 kb on + strand, within MPMX26_02378at 2463.463 kb on + strand, within MPMX26_02379at 2463.476 kb on + strand, within MPMX26_02379at 2463.629 kb on + strand, within MPMX26_02379at 2463.852 kb on + strand, within MPMX26_02380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium Nitrate (N)
remove
2,462,015 - MPMX26_02377 0.64 +0.1
2,462,628 + MPMX26_02378 0.23 +0.0
2,463,463 + MPMX26_02379 0.58 -0.1
2,463,476 + MPMX26_02379 0.61 -0.3
2,463,629 + MPMX26_02379 0.88 +2.0
2,463,852 + MPMX26_02380 0.20 -0.6

Or see this region's nucleotide sequence