Strain Fitness in Escherichia fergusonii Becca around EFB2_04890

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
5,146,639	+		EFB2_04889	0.34	+1.4
5,146,639	+		EFB2_04889	0.34	-0.2
5,146,639	+		EFB2_04889	0.34	-1.9
5,146,639	+		EFB2_04889	0.34	+0.4
5,146,639	+		EFB2_04889	0.34	-0.8
5,146,640	-		EFB2_04889	0.34	+0.3
5,146,640	-		EFB2_04889	0.34	-0.1
5,146,640	-		EFB2_04889	0.34	-0.2
5,146,640	-		EFB2_04889	0.34	+0.4
5,146,773	+		EFB2_04889	0.48	+2.1
5,146,773	+		EFB2_04889	0.48	-1.0
5,146,773	+		EFB2_04889	0.48	-0.6
5,146,773	+		EFB2_04889	0.48	-0.9
5,146,773	+		EFB2_04889	0.48	-0.5
5,146,774	-		EFB2_04889	0.48	-1.1
5,146,774	-		EFB2_04889	0.48	-0.3
5,146,774	-		EFB2_04889	0.48	+1.0
5,146,774	-		EFB2_04889	0.48	-0.8
5,146,774	-		EFB2_04889	0.48	-1.1
5,146,774	-		EFB2_04889	0.48	-0.1
5,146,774	-		EFB2_04889	0.48	-2.2
5,146,788	+		EFB2_04889	0.49	-1.3
5,146,789	-		EFB2_04889	0.49	-0.5
5,146,789	-		EFB2_04889	0.49	+0.2
5,146,859	+		EFB2_04889	0.56	+0.0
5,146,859	+		EFB2_04889	0.56	-0.0
5,146,860	-		EFB2_04889	0.56	-2.6
5,146,860	-		EFB2_04889	0.56	+0.2
5,146,881	+		EFB2_04889	0.59	+0.8
5,146,881	+		EFB2_04889	0.59	+0.8
5,146,881	+		EFB2_04889	0.59	-0.5
5,146,882	-		EFB2_04889	0.59	-0.1
5,146,882	-		EFB2_04889	0.59	-0.1
5,146,926	+		EFB2_04889	0.63	-0.4
5,146,926	+		EFB2_04889	0.63	+0.3
5,146,926	+		EFB2_04889	0.63	+0.3
5,146,927	-		EFB2_04889	0.63	+0.3
5,146,950	+		EFB2_04889	0.66	+0.6
5,146,950	+		EFB2_04889	0.66	+2.1
5,146,950	+		EFB2_04889	0.66	+0.6
5,146,950	+		EFB2_04889	0.66	-0.3
5,146,950	+		EFB2_04889	0.66	+0.1
5,146,950	+		EFB2_04889	0.66	+0.1
5,146,950	+		EFB2_04889	0.66	+0.5
5,146,950	+		EFB2_04889	0.66	-1.1
5,146,950	+		EFB2_04889	0.66	-1.9
5,146,950	+		EFB2_04889	0.66	-0.1
5,146,950	+		EFB2_04889	0.66	+1.1
5,146,950	+		EFB2_04889	0.66	+1.9
5,146,950	+		EFB2_04889	0.66	-2.6
5,146,951	-		EFB2_04889	0.66	-1.5
5,146,951	-		EFB2_04889	0.66	+1.7
5,146,951	-		EFB2_04889	0.66	+1.1
5,146,951	-		EFB2_04889	0.66	-0.3
5,146,951	-		EFB2_04889	0.66	+1.4
5,146,951	-		EFB2_04889	0.66	-1.5
5,146,951	-		EFB2_04889	0.66	+1.2
5,146,951	-		EFB2_04889	0.66	-0.1
5,146,954	+		EFB2_04889	0.66	+0.7
5,146,954	+		EFB2_04889	0.66	-1.0
5,146,954	+		EFB2_04889	0.66	-1.0
5,146,954	+		EFB2_04889	0.66	+0.8
5,146,954	+		EFB2_04889	0.66	-0.2
5,146,954	+		EFB2_04889	0.66	+0.5
5,146,954	+		EFB2_04889	0.66	+0.0
5,146,954	+		EFB2_04889	0.66	+0.2
5,146,954	+		EFB2_04889	0.66	+0.1
5,146,955	-		EFB2_04889	0.66	+1.3
5,146,955	-		EFB2_04889	0.66	+1.7
5,146,955	-		EFB2_04889	0.66	-1.5
5,146,955	-		EFB2_04889	0.66	-0.5
5,146,955	-		EFB2_04889	0.66	+0.4
5,146,955	-		EFB2_04889	0.66	+0.2
5,146,955	-		EFB2_04889	0.66	-0.7
5,146,955	-		EFB2_04889	0.66	+0.3
5,146,955	-		EFB2_04889	0.66	+0.5
5,147,014	+		EFB2_04889	0.72	-0.9
5,147,014	+		EFB2_04889	0.72	+0.1
5,147,015	-		EFB2_04889	0.72	+0.4
5,147,015	-		EFB2_04889	0.72	-2.4
5,147,015	-		EFB2_04889	0.72	-0.8
5,147,015	-		EFB2_04889	0.72	-2.6
5,147,015	-		EFB2_04889	0.72	+0.4
5,147,015	-		EFB2_04889	0.72	+2.0
5,147,050	-		EFB2_04889	0.76	-0.6
5,147,121	+		EFB2_04889	0.83	+0.5
5,147,122	-		EFB2_04889	0.83	-1.0
5,147,122	-		EFB2_04889	0.83	+0.8
5,147,122	-		EFB2_04889	0.83	-0.4
5,147,153	+		EFB2_04889	0.86	+0.8
5,147,153	+		EFB2_04889	0.86	+0.6
5,147,153	+		EFB2_04889	0.86	+1.5
5,147,180	+		EFB2_04889	0.89	-1.1
5,147,181	-		EFB2_04889	0.89	-0.0
5,147,181	-		EFB2_04889	0.89	-0.4
5,147,255	+				-2.0
5,147,255	+				+0.7
5,147,255	+				-1.0
5,147,255	+				+0.9
5,147,255	+				-2.6
5,147,256	-				-0.5
5,147,256	-				+0.9
5,147,256	-				-2.6
5,147,256	-				-1.7
5,147,256	-				+0.1
5,147,256	-				+0.9
5,147,256	-				+0.1
5,147,256	-				-3.5
5,147,256	-				-0.6
5,147,278	+				-3.2
5,147,278	+				-0.6
5,147,278	+				-1.1
5,147,278	+				+2.1
5,147,278	+				-2.6
5,147,278	+				-0.3
5,147,278	+				-0.4
5,147,278	+				-2.5
5,147,278	+				+0.7
5,147,278	+				+0.0
5,147,278	+				+0.2
5,147,278	+				-1.1
5,147,278	+				-1.5
5,147,278	+				+0.8
5,147,278	+				-2.0
5,147,278	+				-0.3
5,147,278	+				-0.7
5,147,278	+				+1.1
5,147,279	-				-0.5
5,147,279	-				-1.2
5,147,279	-				-0.4
5,147,279	-				-1.2
5,147,279	-				-1.8
5,147,279	-				+0.7
5,147,279	-				+0.5
5,147,279	-				+0.0
5,147,279	-				+0.7
5,147,279	-				+0.1
5,147,279	-				-2.3
5,147,279	-				+0.9
5,147,279	-				-0.4
5,147,279	-				-0.5
5,147,279	-				-1.3
5,147,296	+				-2.2
5,147,296	+				-1.6
5,147,297	-				+0.8
5,147,297	-				-0.7
5,147,297	-				+1.2
5,147,298	+				+0.6
5,147,298	+				-1.7
5,147,298	+				-0.7
5,147,299	-				+0.0
5,147,299	-				-0.2
5,147,318	+				+0.2
5,147,318	+				-0.1
5,147,319	-				+0.3
5,147,319	-				+0.7
5,147,324	+				-0.2
5,147,325	-				+1.0
5,147,377	+				-3.2
5,147,377	+				+0.2
5,147,405	-				-0.2
5,147,405	-				+0.1
5,147,442	+				+0.5
5,147,452	+				+0.2
5,147,452	+				-0.1
5,147,452	+				+0.8
5,147,453	-				-2.0
5,147,453	-				+0.0
5,147,453	-				+0.6
5,147,453	-				+1.0
5,147,453	-				-0.0
5,147,453	-				-0.1
5,147,456	+				-3.2
5,147,456	+				-2.9
5,147,492	+		EFB2_04890	0.11	-1.4
5,147,493	-		EFB2_04890	0.11	-0.5
5,147,493	-		EFB2_04890	0.11	+1.1
5,147,493	-		EFB2_04890	0.11	+0.3
5,147,493	-		EFB2_04890	0.11	+0.2
5,147,515	+		EFB2_04890	0.16	+0.1
5,147,516	-		EFB2_04890	0.16	-0.0
5,147,516	-		EFB2_04890	0.16	-0.7
5,147,516	-		EFB2_04890	0.16	+0.1
5,147,570	+		EFB2_04890	0.28	-1.8
5,147,570	+		EFB2_04890	0.28	-0.2
5,147,610	+		EFB2_04890	0.36	-0.7
5,147,610	+		EFB2_04890	0.36	+0.8
5,147,610	+		EFB2_04890	0.36	+0.6
5,147,611	-		EFB2_04890	0.37	+0.7
5,147,638	+		EFB2_04890	0.42	+0.5
5,147,638	+		EFB2_04890	0.42	-1.3
5,147,638	+		EFB2_04890	0.42	-0.0
5,147,639	-		EFB2_04890	0.43	-2.5
5,147,645	+		EFB2_04890	0.44	-0.3
5,147,645	+		EFB2_04890	0.44	+1.3
5,147,645	+		EFB2_04890	0.44	-0.5
5,147,645	+		EFB2_04890	0.44	+0.3
5,147,645	+		EFB2_04890	0.44	-1.2
5,147,645	+		EFB2_04890	0.44	-1.6
5,147,645	+		EFB2_04890	0.44	-0.5
5,147,645	+		EFB2_04890	0.44	-0.1
5,147,645	+		EFB2_04890	0.44	-0.0
5,147,645	+		EFB2_04890	0.44	+0.5
5,147,645	+		EFB2_04890	0.44	+0.2
5,147,645	+		EFB2_04890	0.44	-0.8
5,147,645	+		EFB2_04890	0.44	-0.3
5,147,645	+		EFB2_04890	0.44	-1.2
5,147,645	+		EFB2_04890	0.44	-2.2
5,147,645	+		EFB2_04890	0.44	+1.0
5,147,645	+		EFB2_04890	0.44	+1.5
5,147,645	+		EFB2_04890	0.44	+0.1
5,147,646	-		EFB2_04890	0.44	+0.1
5,147,646	-		EFB2_04890	0.44	+1.0
5,147,646	-		EFB2_04890	0.44	-0.9
5,147,646	-		EFB2_04890	0.44	+0.1
5,147,646	-		EFB2_04890	0.44	-2.3
5,147,646	-		EFB2_04890	0.44	+0.6
5,147,646	-		EFB2_04890	0.44	+0.8
5,147,646	-		EFB2_04890	0.44	+0.4
5,147,646	-		EFB2_04890	0.44	-2.5
5,147,646	-		EFB2_04890	0.44	+0.2
5,147,646	-		EFB2_04890	0.44	+0.9
5,147,646	-		EFB2_04890	0.44	+0.8
5,147,646	-		EFB2_04890	0.44	-0.5
5,147,655	+		EFB2_04890	0.46	+0.2
5,147,664	+		EFB2_04890	0.48	-0.7
5,147,664	+		EFB2_04890	0.48	-0.8
5,147,664	+		EFB2_04890	0.48	-0.3
5,147,664	+		EFB2_04890	0.48	-1.9
5,147,664	+		EFB2_04890	0.48	+0.8
5,147,664	+		EFB2_04890	0.48	-1.4
5,147,664	+		EFB2_04890	0.48	+1.6
5,147,665	-		EFB2_04890	0.48	+0.3
5,147,665	-		EFB2_04890	0.48	-0.2
5,147,665	-		EFB2_04890	0.48	+0.7
5,147,665	-		EFB2_04890	0.48	-0.9
5,147,665	-		EFB2_04890	0.48	+0.9
5,147,665	-		EFB2_04890	0.48	+1.7
5,147,665	-		EFB2_04890	0.48	+0.8
5,147,665	-		EFB2_04890	0.48	-0.3
5,147,665	-		EFB2_04890	0.48	-0.8
5,147,665	-		EFB2_04890	0.48	-0.3
5,147,665	-		EFB2_04890	0.48	+1.8
5,147,665	-		EFB2_04890	0.48	+0.3
5,147,665	-		EFB2_04890	0.48	-0.3
5,147,665	-		EFB2_04890	0.48	-2.4
5,147,665	-		EFB2_04890	0.48	+0.4
5,147,666	+		EFB2_04890	0.49	+0.5
5,147,666	+		EFB2_04890	0.49	-1.9
5,147,666	+		EFB2_04890	0.49	+0.1
5,147,666	+		EFB2_04890	0.49	-0.0
5,147,666	+		EFB2_04890	0.49	-0.5
5,147,666	+		EFB2_04890	0.49	+0.3
5,147,666	+		EFB2_04890	0.49	+0.2
5,147,666	+		EFB2_04890	0.49	+0.1
5,147,666	+		EFB2_04890	0.49	-1.6
5,147,666	+		EFB2_04890	0.49	-3.5
5,147,666	+		EFB2_04890	0.49	+0.8
5,147,666	+		EFB2_04890	0.49	-0.7
5,147,666	+		EFB2_04890	0.49	+0.1
5,147,666	+		EFB2_04890	0.49	+0.1
5,147,666	+		EFB2_04890	0.49	-3.9
5,147,667	-		EFB2_04890	0.49	-3.2
5,147,667	-		EFB2_04890	0.49	+0.5
5,147,667	-		EFB2_04890	0.49	-0.0
5,147,667	-		EFB2_04890	0.49	-1.9
5,147,667	-		EFB2_04890	0.49	+1.2
5,147,667	-		EFB2_04890	0.49	+0.1
5,147,667	-		EFB2_04890	0.49	+0.9
5,147,667	-		EFB2_04890	0.49	+0.4
5,147,667	-		EFB2_04890	0.49	+1.4
5,147,667	-		EFB2_04890	0.49	+1.2
5,147,667	-		EFB2_04890	0.49	+0.1
5,147,667	-		EFB2_04890	0.49	+0.9
5,147,667	-		EFB2_04890	0.49	-0.5
5,147,667	-		EFB2_04890	0.49	+1.8
5,147,667	-		EFB2_04890	0.49	-1.2
5,147,670	-		EFB2_04890	0.49	+0.3
5,147,670	-		EFB2_04890	0.49	+0.6
5,147,670	-		EFB2_04890	0.49	+0.3
5,147,686	+		EFB2_04890	0.53	-0.1
5,147,686	+		EFB2_04890	0.53	-0.6
5,147,686	+		EFB2_04890	0.53	-0.5
5,147,687	-		EFB2_04890	0.53	+1.0
5,147,687	-		EFB2_04890	0.53	+0.3
5,147,737	+		EFB2_04890	0.64	+0.2
5,147,737	+		EFB2_04890	0.64	+0.1
5,147,737	+		EFB2_04890	0.64	-0.1
5,147,737	+		EFB2_04890	0.64	-0.6
5,147,737	+		EFB2_04890	0.64	+0.8
5,147,737	+		EFB2_04890	0.64	+0.4
5,147,737	+		EFB2_04890	0.64	-0.5
5,147,737	+		EFB2_04890	0.64	-0.1
5,147,737	+		EFB2_04890	0.64	-0.6
5,147,737	+		EFB2_04890	0.64	+1.3
5,147,738	-		EFB2_04890	0.64	+0.1
5,147,738	-		EFB2_04890	0.64	-1.0
5,147,738	-		EFB2_04890	0.64	-1.4
5,147,740	+		EFB2_04890	0.65	-0.2
5,147,740	+		EFB2_04890	0.65	+0.3
5,147,740	+		EFB2_04890	0.65	+0.5
5,147,740	+		EFB2_04890	0.65	+0.5
5,147,740	+		EFB2_04890	0.65	-2.9
5,147,740	+		EFB2_04890	0.65	+1.0
5,147,740	+		EFB2_04890	0.65	+0.2
5,147,740	+		EFB2_04890	0.65	+1.2
5,147,740	+		EFB2_04890	0.65	+0.4
5,147,741	-		EFB2_04890	0.65	-1.1
5,147,741	-		EFB2_04890	0.65	-1.7
5,147,741	-		EFB2_04890	0.65	-0.4
5,147,741	-		EFB2_04890	0.65	-0.1
5,147,741	-		EFB2_04890	0.65	+0.1
5,147,741	-		EFB2_04890	0.65	+0.1
5,147,741	-		EFB2_04890	0.65	+0.8
5,147,741	-		EFB2_04890	0.65	+0.6
5,147,755	+		EFB2_04890	0.68	+0.7
5,147,755	+		EFB2_04890	0.68	-0.2
5,147,755	+		EFB2_04890	0.68	+0.5
5,147,755	+		EFB2_04890	0.68	+0.1
5,147,756	-		EFB2_04890	0.68	+3.4
5,147,756	-		EFB2_04890	0.68	+0.8
5,147,756	-		EFB2_04890	0.68	-1.7
5,147,756	-		EFB2_04890	0.68	+0.6
5,147,756	-		EFB2_04890	0.68	+1.0
5,147,756	-		EFB2_04890	0.68	+0.0
5,147,756	-		EFB2_04890	0.68	-2.7
5,147,766	+		EFB2_04890	0.70	+0.0
5,147,766	+		EFB2_04890	0.70	+0.9
5,147,766	+		EFB2_04890	0.70	+0.2
5,147,767	-		EFB2_04890	0.71	+0.6
5,147,768	+		EFB2_04890	0.71	-0.6
5,147,768	+		EFB2_04890	0.71	+0.3
5,147,768	+		EFB2_04890	0.71	+0.1
5,147,769	-		EFB2_04890	0.71	+0.5
5,147,769	-		EFB2_04890	0.71	+0.8
5,147,769	-		EFB2_04890	0.71	-0.5
5,147,769	-		EFB2_04890	0.71	-0.7
5,147,807	+		EFB2_04890	0.79	-0.9
5,147,807	+		EFB2_04890	0.79	-0.5
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