Strain Fitness in Escherichia fergusonii Becca around EFB2_03913

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,098,842	+		EFB2_03911	0.30	-3.7
4,098,842	+		EFB2_03911	0.30	-0.6
4,098,843	-		EFB2_03911	0.30	-4.2
4,098,843	-		EFB2_03911	0.30	-0.8
4,098,843	-		EFB2_03911	0.30	-0.7
4,098,853	+		EFB2_03911	0.31	-0.8
4,098,853	+		EFB2_03911	0.31	-3.1
4,098,853	+		EFB2_03911	0.31	-3.0
4,098,872	-		EFB2_03911	0.33	-1.0
4,098,872	-		EFB2_03911	0.33	-2.1
4,098,883	-		EFB2_03911	0.35	-3.4
4,098,894	-		EFB2_03911	0.36	-4.3
4,098,909	+		EFB2_03911	0.38	-4.2
4,098,909	+		EFB2_03911	0.38	+0.2
4,098,909	+		EFB2_03911	0.38	-3.6
4,098,909	+		EFB2_03911	0.38	-3.1
4,098,909	+		EFB2_03911	0.38	-1.2
4,098,909	+		EFB2_03911	0.38	-3.8
4,098,909	+		EFB2_03911	0.38	-0.4
4,098,909	+		EFB2_03911	0.38	-1.6
4,098,909	+		EFB2_03911	0.38	-3.1
4,098,909	+		EFB2_03911	0.38	-3.1
4,098,909	+		EFB2_03911	0.38	-3.3
4,098,909	+		EFB2_03911	0.38	-1.7
4,098,909	+		EFB2_03911	0.38	-5.2
4,098,909	+		EFB2_03911	0.38	-2.6
4,098,909	+		EFB2_03911	0.38	-1.7
4,098,909	+		EFB2_03911	0.38	-0.7
4,098,909	+		EFB2_03911	0.38	-1.2
4,098,909	+		EFB2_03911	0.38	-4.7
4,098,909	+		EFB2_03911	0.38	-1.4
4,098,909	+		EFB2_03911	0.38	-3.0
4,098,909	+		EFB2_03911	0.38	-4.2
4,098,909	+		EFB2_03911	0.38	-1.7
4,098,909	+		EFB2_03911	0.38	-1.0
4,098,909	+		EFB2_03911	0.38	-3.5
4,098,909	+		EFB2_03911	0.38	-3.3
4,098,909	+		EFB2_03911	0.38	-3.3
4,098,909	+		EFB2_03911	0.38	-1.4
4,098,909	+		EFB2_03911	0.38	-0.4
4,098,909	+		EFB2_03911	0.38	-0.4
4,098,909	+		EFB2_03911	0.38	-0.5
4,098,909	+		EFB2_03911	0.38	-4.1
4,098,909	+		EFB2_03911	0.38	-5.1
4,098,909	+		EFB2_03911	0.38	-2.9
4,098,909	+		EFB2_03911	0.38	-1.4
4,098,909	+		EFB2_03911	0.38	+1.0
4,098,909	+		EFB2_03911	0.38	-2.2
4,098,909	+		EFB2_03911	0.38	-3.1
4,098,909	+		EFB2_03911	0.38	-1.4
4,098,909	+		EFB2_03911	0.38	-1.8
4,098,909	+		EFB2_03911	0.38	-3.2
4,098,909	+		EFB2_03911	0.38	-3.0
4,098,909	+		EFB2_03911	0.38	-3.5
4,098,909	+		EFB2_03911	0.38	-4.1
4,098,909	+		EFB2_03911	0.38	-1.5
4,098,909	+		EFB2_03911	0.38	-1.8
4,098,909	+		EFB2_03911	0.38	-3.4
4,098,909	+		EFB2_03911	0.38	-3.5
4,098,909	+		EFB2_03911	0.38	-2.2
4,098,909	+		EFB2_03911	0.38	-5.1
4,098,909	+		EFB2_03911	0.38	-2.2
4,098,909	+		EFB2_03911	0.38	+0.6
4,098,909	+		EFB2_03911	0.38	-3.1
4,098,909	+		EFB2_03911	0.38	-2.5
4,098,909	+		EFB2_03911	0.38	-1.3
4,098,909	+		EFB2_03911	0.38	-0.7
4,098,909	+		EFB2_03911	0.38	-4.3
4,098,909	+		EFB2_03911	0.38	-2.2
4,098,909	+		EFB2_03911	0.38	-3.6
4,098,910	-		EFB2_03911	0.38	-1.4
4,098,910	-		EFB2_03911	0.38	-3.9
4,098,910	-		EFB2_03911	0.38	-3.4
4,098,910	-		EFB2_03911	0.38	-1.3
4,098,910	-		EFB2_03911	0.38	-2.2
4,098,910	-		EFB2_03911	0.38	-1.8
4,098,910	-		EFB2_03911	0.38	-4.5
4,098,910	-		EFB2_03911	0.38	-3.3
4,098,910	-		EFB2_03911	0.38	-3.0
4,098,910	-		EFB2_03911	0.38	-3.0
4,098,910	-		EFB2_03911	0.38	-4.4
4,098,910	-		EFB2_03911	0.38	-3.1
4,098,910	-		EFB2_03911	0.38	-3.3
4,098,910	-		EFB2_03911	0.38	-1.3
4,098,910	-		EFB2_03911	0.38	-4.6
4,098,910	-		EFB2_03911	0.38	-4.1
4,098,910	-		EFB2_03911	0.38	-3.6
4,098,910	-		EFB2_03911	0.38	-2.4
4,098,910	-		EFB2_03911	0.38	-0.2
4,098,910	-		EFB2_03911	0.38	-1.6
4,098,910	-		EFB2_03911	0.38	-1.6
4,098,910	-		EFB2_03911	0.38	-0.7
4,098,910	-		EFB2_03911	0.38	-1.7
4,098,910	-		EFB2_03911	0.38	-2.3
4,098,910	-		EFB2_03911	0.38	-3.0
4,098,910	-		EFB2_03911	0.38	-3.2
4,098,910	-		EFB2_03911	0.38	-4.2
4,098,910	-		EFB2_03911	0.38	-1.7
4,098,910	-		EFB2_03911	0.38	+0.7
4,098,910	-		EFB2_03911	0.38	-0.4
4,098,910	-		EFB2_03911	0.38	-1.1
4,098,910	-		EFB2_03911	0.38	-3.9
4,098,910	-		EFB2_03911	0.38	+0.5
4,098,910	-		EFB2_03911	0.38	-3.6
4,098,910	-		EFB2_03911	0.38	-0.6
4,098,910	-		EFB2_03911	0.38	-2.7
4,098,910	-		EFB2_03911	0.38	-2.0
4,098,910	-		EFB2_03911	0.38	-0.0
4,098,910	-		EFB2_03911	0.38	-3.3
4,098,910	-		EFB2_03911	0.38	-3.3
4,098,910	-		EFB2_03911	0.38	-2.4
4,098,910	-		EFB2_03911	0.38	-1.1
4,098,910	-		EFB2_03911	0.38	-0.4
4,098,910	-		EFB2_03911	0.38	-2.2
4,098,910	-		EFB2_03911	0.38	-2.7
4,098,910	-		EFB2_03911	0.38	-4.1
4,098,910	-		EFB2_03911	0.38	-3.9
4,098,910	-		EFB2_03911	0.38	-2.4
4,098,983	+		EFB2_03911	0.46	-1.4
4,098,983	+		EFB2_03911	0.46	-1.4
4,098,984	-		EFB2_03911	0.46	-2.2
4,098,984	-		EFB2_03911	0.46	-3.7
4,098,984	-		EFB2_03911	0.46	-3.9
4,099,082	+		EFB2_03911	0.58	-2.6
4,099,082	+		EFB2_03911	0.58	-5.0
4,099,083	-		EFB2_03911	0.58	-2.8
4,099,083	-		EFB2_03911	0.58	-2.8
4,099,083	-		EFB2_03911	0.58	-2.8
4,099,095	-		EFB2_03911	0.60	-1.0
4,099,095	-		EFB2_03911	0.60	-2.6
4,099,118	+		EFB2_03911	0.62	+1.8
4,099,118	+		EFB2_03911	0.62	-0.1
4,099,119	-		EFB2_03911	0.62	+0.2
4,099,161	+		EFB2_03911	0.67	-1.8
4,099,162	-		EFB2_03911	0.67	-0.7
4,099,200	+		EFB2_03911	0.72	+0.6
4,099,200	+		EFB2_03911	0.72	-0.4
4,099,201	-		EFB2_03911	0.72	-1.1
4,099,201	-		EFB2_03911	0.72	+0.7
4,099,201	-		EFB2_03911	0.72	-0.3
4,099,201	-		EFB2_03911	0.72	+1.4
4,099,262	+		EFB2_03911	0.79	-4.2
4,099,262	+		EFB2_03911	0.79	-0.5
4,099,263	-		EFB2_03911	0.79	-3.6
4,099,263	-		EFB2_03911	0.79	-0.8
4,099,423	+				+0.5
4,099,423	+				-0.6
4,099,424	-				+0.2
4,099,437	+				-0.3
4,099,437	+				+0.0
4,099,438	-				-3.0
4,099,438	-				-1.7
4,099,444	+				+1.6
4,099,444	+				-0.4
4,099,444	+				-1.6
4,099,444	+				-2.8
4,099,444	+				-3.5
4,099,444	+				+1.5
4,099,444	+				+1.0
4,099,444	+				+0.1
4,099,445	-				+0.3
4,099,445	-				-1.5
4,099,445	-				+0.9
4,099,445	-				-0.0
4,099,473	+				-0.1
4,099,473	+				+1.3
4,099,473	+				+1.5
4,099,473	+				-2.3
4,099,474	-				-0.3
4,099,474	-				-1.2
4,099,474	-				-1.9
4,099,489	-				-0.5
4,099,489	-				-0.1
4,099,494	+				+1.6
4,099,502	+				-3.0
4,099,502	+				-1.6
4,099,502	+				+1.7
4,099,502	+				+0.0
4,099,502	+				-0.5
4,099,502	+				-0.4
4,099,502	+				+0.3
4,099,502	+				+0.4
4,099,502	+				-1.1
4,099,502	+				-0.0
4,099,502	+				+1.5
4,099,502	+				-1.4
4,099,503	-				+0.2
4,099,503	-				-0.7
4,099,503	-				-1.5
4,099,503	-				+1.5
4,099,503	-				+0.1
4,099,503	-				-1.0
4,099,503	-				-0.2
4,099,503	-				-1.3
4,099,503	-				+0.5
4,099,508	+				-0.1
4,099,508	+				-1.2
4,099,513	+				-0.8
4,099,513	+				-0.4
4,099,513	+				-1.5
4,099,514	-				+1.5
4,099,514	-				+1.4
4,099,514	-				+1.6
4,099,514	-				+0.0
4,099,522	+				-0.2
4,099,522	+				+1.7
4,099,522	+				+0.8
4,099,522	+				+0.2
4,099,522	+				-0.3
4,099,522	+				-0.6
4,099,522	+				-1.0
4,099,522	+				-1.7
4,099,522	+				+0.4
4,099,522	+				-1.3
4,099,522	+				+0.5
4,099,522	+				-3.6
4,099,522	+				-1.7
4,099,522	+				-1.1
4,099,522	+				-1.8
4,099,522	+				-0.5
4,099,522	+				-0.4
4,099,522	+				-2.2
4,099,522	+				-3.2
4,099,522	+				+0.3
4,099,522	+				-1.1
4,099,522	+				-0.4
4,099,522	+				-1.2
4,099,522	+				+1.2
4,099,522	+				+2.4
4,099,522	+				-0.0
4,099,522	+				+1.4
4,099,523	-				-2.8
4,099,523	-				-0.1
4,099,523	-				-0.7
4,099,523	-				-0.5
4,099,523	-				+0.4
4,099,523	-				+2.0
4,099,523	-				-0.6
4,099,523	-				+0.1
4,099,523	-				-0.6
4,099,523	-				-0.3
4,099,523	-				-0.2
4,099,523	-				+0.7
4,099,523	-				+0.3
4,099,523	-				-1.1
4,099,523	-				+0.4
4,099,523	-				-0.5
4,099,523	-				-3.0
4,099,523	-				+0.8
4,099,523	-				-0.5
4,099,523	-				-2.2
4,099,523	-				+0.4
4,099,523	-				-1.1
4,099,526	+				-1.7
4,099,526	+				+1.5
4,099,526	+				+1.0
4,099,526	+				-0.5
4,099,526	+				-0.5
4,099,526	+				-1.3
4,099,526	+				+0.0
4,099,526	+				+1.5
4,099,527	-				+0.3
4,099,527	-				+0.1
4,099,527	-				-1.1
4,099,532	+				+0.0
4,099,532	+				-2.2
4,099,532	+				-0.4
4,099,532	+				-1.0
4,099,532	+				-0.4
4,099,532	+				-0.2
4,099,532	+				-0.4
4,099,532	+				+1.4
4,099,532	+				+0.2
4,099,532	+				+0.1
4,099,532	+				-1.4
4,099,533	-				-2.7
4,099,533	-				-0.9
4,099,533	-				-0.2
4,099,533	-				-0.7
4,099,533	-				-0.3
4,099,533	-				-2.0
4,099,533	-				-1.0
4,099,536	+				-1.1
4,099,536	+				-3.2
4,099,536	+				+0.4
4,099,536	+				-0.4
4,099,536	+				+0.8
4,099,536	+				+0.7
4,099,536	+				+0.9
4,099,536	+				-1.6
4,099,536	+				-2.4
4,099,536	+				-1.0
4,099,536	+				+0.3
4,099,536	+				-0.3
4,099,536	+				+0.1
4,099,536	+				+1.0
4,099,537	-				-0.9
4,099,537	-				+0.3
4,099,537	-				+0.4
4,099,537	-				+0.0
4,099,537	-				-0.2
4,099,537	-				-0.6
4,099,537	-				-0.0
4,099,537	-				-0.9
4,099,537	-				+0.5
4,099,537	-				+1.5
4,099,537	-				-1.5
4,099,542	-		EFB2_03912	0.10	+0.4
4,099,560	+		EFB2_03912	0.19	-0.5
4,099,560	+		EFB2_03912	0.19	-0.3
4,099,560	+		EFB2_03912	0.19	+0.6
4,099,561	-		EFB2_03912	0.20	-0.4
4,099,561	-		EFB2_03912	0.20	-0.4
4,099,561	-		EFB2_03912	0.20	-1.9
4,099,561	-		EFB2_03912	0.20	+0.1
4,099,561	-		EFB2_03912	0.20	+1.5
4,099,626	+		EFB2_03912	0.51	+0.0
4,099,626	+		EFB2_03912	0.51	+0.8
4,099,626	+		EFB2_03912	0.51	+0.5
4,099,627	-		EFB2_03912	0.52	-1.6
4,099,627	-		EFB2_03912	0.52	+0.8
4,099,627	-		EFB2_03912	0.52	+1.1
4,099,627	-		EFB2_03912	0.52	-1.9
4,099,627	-		EFB2_03912	0.52	-0.8
4,099,627	-		EFB2_03912	0.52	-0.4
4,099,646	+		EFB2_03912	0.61	-0.1
4,099,646	+		EFB2_03912	0.61	+2.8
4,099,646	+		EFB2_03912	0.61	+1.5
4,099,646	+		EFB2_03912	0.61	-2.6
4,099,646	+		EFB2_03912	0.61	+0.4
4,099,646	+		EFB2_03912	0.61	+0.9
4,099,646	+		EFB2_03912	0.61	-0.1
4,099,646	+		EFB2_03912	0.61	-0.4
4,099,646	+		EFB2_03912	0.61	-1.9
4,099,646	+		EFB2_03912	0.61	+0.6
4,099,646	+		EFB2_03912	0.61	+0.7
4,099,646	+		EFB2_03912	0.61	-2.4
4,099,646	+		EFB2_03912	0.61	-0.5
4,099,646	+		EFB2_03912	0.61	+0.2
4,099,646	+		EFB2_03912	0.61	-0.1
4,099,646	+		EFB2_03912	0.61	-0.5
4,099,646	+		EFB2_03912	0.61	+1.6
4,099,646	+		EFB2_03912	0.61	+1.1
4,099,646	+		EFB2_03912	0.61	+0.1
4,099,646	+		EFB2_03912	0.61	-0.9
4,099,646	+		EFB2_03912	0.61	-0.4
4,099,646	+		EFB2_03912	0.61	-0.7
4,099,646	+		EFB2_03912	0.61	+1.7
4,099,646	+		EFB2_03912	0.61	-0.4
4,099,646	+		EFB2_03912	0.61	+1.5
4,099,646	+		EFB2_03912	0.61	+0.1
4,099,646	+		EFB2_03912	0.61	-1.1
4,099,647	-		EFB2_03912	0.62	+1.7
4,099,647	-		EFB2_03912	0.62	-3.1
4,099,647	-		EFB2_03912	0.62	-3.2
4,099,647	-		EFB2_03912	0.62	-1.2
4,099,647	-		EFB2_03912	0.62	-0.2
4,099,647	-		EFB2_03912	0.62	+0.3
4,099,647	-		EFB2_03912	0.62	-0.3
4,099,647	-		EFB2_03912	0.62	+0.4
4,099,647	-		EFB2_03912	0.62	-0.0
4,099,647	-		EFB2_03912	0.62	-0.2
4,099,647	-		EFB2_03912	0.62	-0.3
4,099,647	-		EFB2_03912	0.62	+2.6
4,099,647	-		EFB2_03912	0.62	-0.0
4,099,647	-		EFB2_03912	0.62	-0.2
4,099,647	-		EFB2_03912	0.62	-2.1
4,099,647	-		EFB2_03912	0.62	+2.1
4,099,647	-		EFB2_03912	0.62	+0.6
4,099,647	-		EFB2_03912	0.62	-1.2
4,099,647	-		EFB2_03912	0.62	+2.1
4,099,647	-		EFB2_03912	0.62	+0.3
4,099,647	-		EFB2_03912	0.62	+1.8
4,099,647	-		EFB2_03912	0.62	-0.1
4,099,647	-		EFB2_03912	0.62	-2.2
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4,101,171	-		EFB2_03914	0.45	-1.7
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4,101,171	-		EFB2_03914	0.45	+0.2
4,101,171	-		EFB2_03914	0.45	-2.3
4,101,171	-		EFB2_03914	0.45	+0.9
4,101,171	-		EFB2_03914	0.45	-2.2
4,101,171	-		EFB2_03914	0.45	+0.1
4,101,171	-		EFB2_03914	0.45	-0.9
4,101,171	-		EFB2_03914	0.45	+0.1
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4,101,171	-		EFB2_03914	0.45	-1.4
4,101,171	-		EFB2_03914	0.45	-2.6
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4,101,171	-		EFB2_03914	0.45	-3.4
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4,101,171	-		EFB2_03914	0.45	+0.7
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4,101,202	+		EFB2_03914	0.53	+0.4
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4,101,248	-		EFB2_03914	0.65	-0.5
4,101,317	+		EFB2_03914	0.83	-0.1
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4,101,346	+				+3.1
4,101,347	-				+1.5
4,101,400	+				-0.0
4,101,440	+				-2.9
4,101,440	+				-0.6
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4,101,441	-				-2.4
4,101,441	-				-0.8
4,101,445	+				-1.6
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4,101,446	-				+0.5
4,101,446	-				-1.3
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4,101,473	-				+0.2
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4,101,574	-		EFB2_03915	0.16	-0.5
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4,101,690	-		EFB2_03915	0.25	+0.1
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4,101,709	+		EFB2_03915	0.27	-1.5
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4,101,710	-		EFB2_03915	0.27	+2.0
4,101,710	-		EFB2_03915	0.27	-2.2