Strain Fitness in Escherichia fergusonii Becca around EFB2_03721

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,894,206	+				+0.8
3,894,227	+				+0.7
3,894,232	+				+0.5
3,894,314	+				-0.2
3,894,322	-				+0.5
3,894,322	-				+0.6
3,894,344	+				+0.6
3,894,344	+				-0.6
3,894,344	+				-0.7
3,894,344	+				+0.8
3,894,345	-				-1.1
3,894,345	-				+0.6
3,894,368	+				+0.4
3,894,368	+				+1.7
3,894,368	+				-0.6
3,894,369	-				+0.2
3,894,369	-				+1.0
3,894,369	-				-1.4
3,894,369	-				-0.7
3,894,369	-				+0.9
3,894,369	-				+0.2
3,894,369	-				-2.3
3,894,369	-				+0.3
3,894,369	-				-0.8
3,894,369	-				-2.2
3,894,381	+				+1.0
3,894,381	+				-2.8
3,894,381	+				+1.0
3,894,389	-				+2.4
3,894,399	+				-1.9
3,894,399	+				+0.6
3,894,399	+				+0.8
3,894,399	+				+1.1
3,894,400	-				+0.1
3,894,400	-				+1.5
3,894,400	-				+0.4
3,894,400	-				-0.4
3,894,400	-				+0.9
3,894,400	-				+2.7
3,894,403	+				-1.4
3,894,403	+				+0.8
3,894,403	+				+0.6
3,894,403	+				+0.6
3,894,403	+				+0.8
3,894,403	+				+0.4
3,894,403	+				-0.5
3,894,403	+				-1.7
3,894,403	+				-0.8
3,894,403	+				+0.9
3,894,403	+				+2.0
3,894,404	-				-3.9
3,894,404	-				+0.4
3,894,404	-				-0.1
3,894,404	-				+0.9
3,894,404	-				-0.2
3,894,404	-				+1.2
3,894,404	-				-0.5
3,894,404	-				+1.1
3,894,404	-				-2.9
3,894,404	-				-2.6
3,894,404	-				+0.3
3,894,404	-				-1.3
3,894,404	-				-1.6
3,894,404	-				-1.2
3,894,404	-				+0.9
3,894,404	-				-0.6
3,894,404	-				+1.4
3,894,404	-				+0.7
3,894,404	-				-0.6
3,894,404	-				+1.4
3,894,405	+				+0.7
3,894,405	+				+0.5
3,894,405	+				+0.5
3,894,405	+				-2.8
3,894,405	+				+4.0
3,894,406	-				-0.2
3,894,406	-				+0.1
3,894,434	-				+0.1
3,894,439	+				+2.3
3,894,440	-				+0.2
3,894,466	+				+0.8
3,894,467	-				-3.2
3,894,472	-				-2.0
3,894,472	-				+0.1
3,894,475	+				+1.1
3,894,488	+				-3.3
3,894,489	-				-0.9
3,894,513	-				-0.2
3,894,532	-				-0.1
3,894,546	-				+0.1
3,894,561	+				-0.3
3,894,562	-				+0.4
3,894,569	+				-0.1
3,894,579	-				-0.7
3,894,607	+				-2.8
3,894,607	+				-1.7
3,894,608	-				-0.1
3,894,608	-				+0.3
3,894,608	-				-0.7
3,894,638	+				-0.4
3,894,638	+				+0.8
3,894,638	+				+0.1
3,894,639	-				+0.4
3,894,639	-				-0.6
3,894,639	-				+1.6
3,894,640	+				-0.0
3,894,641	-				+0.5
3,894,684	+				+1.8
3,894,692	+				+1.5
3,894,692	+				-0.5
3,894,692	+				-0.9
3,894,713	+				-2.4
3,894,713	+				-2.4
3,894,714	-				-0.3
3,894,733	+				-2.6
3,894,734	-				+2.2
3,894,734	-				+1.1
3,894,739	+				+0.1
3,894,740	-				-0.2
3,894,740	-				+0.7
3,894,740	-				+0.5
3,894,749	+				-0.0
3,894,754	+				+0.4
3,894,754	+				+0.1
3,894,754	+				+1.0
3,894,754	+				+1.2
3,894,754	+				+0.1
3,894,754	+				-1.0
3,894,754	+				+2.2
3,894,754	+				+1.4
3,894,755	-				+1.0
3,894,755	-				+0.6
3,894,755	-				-2.7
3,894,755	-				-1.7
3,894,755	-				-0.7
3,894,755	-				-1.2
3,894,755	-				-0.1
3,894,755	-				-0.7
3,894,755	-				+0.3
3,894,755	-				+1.5
3,894,804	+				+0.1
3,894,804	+				-0.9
3,894,805	-				+1.4
3,894,808	+				-1.5
3,894,808	+				+0.2
3,894,808	+				+1.1
3,894,809	-				+1.4
3,894,819	-				-1.4
3,894,820	+				-0.6
3,894,820	+				-1.8
3,894,820	+				+0.8
3,894,821	-				+0.3
3,894,821	-				+0.0
3,894,821	-				+0.6
3,894,821	-				+0.4
3,894,821	-				+1.1
3,894,845	+				+0.3
3,894,846	-				+0.1
3,894,858	-				-1.4
3,894,862	+				-1.1
3,894,901	+				-2.4
3,894,970	+				-0.2
3,894,970	+				+0.6
3,894,974	+				+2.3
3,894,975	-				+1.7
3,894,975	-				+2.0
3,894,979	+				-2.8
3,894,980	-				-1.9
3,894,980	-				+1.4
3,894,980	-				+0.5
3,894,983	+				-1.1
3,894,983	+				-1.4
3,894,984	-				-0.1
3,894,989	+				+1.3
3,894,990	-				-0.1
3,894,990	-				+0.9
3,894,990	-				+0.1
3,894,990	-				+2.8
3,895,022	+				-2.6
3,895,023	-				+0.2
3,895,039	+				-0.8
3,895,039	+				+1.7
3,895,040	-				-0.3
3,895,040	-				-2.5
3,895,040	-				+0.6
3,895,056	-				-3.5
3,895,058	+				+0.7
3,895,058	+				-1.9
3,895,059	-				-1.0
3,895,059	-				-0.4
3,895,089	+				+0.9
3,895,089	+				+0.4
3,895,090	-				+0.2
3,895,090	-				+0.7
3,895,090	-				+1.5
3,895,090	-				-2.2
3,895,097	+				+0.4
3,895,097	+				-0.4
3,895,097	+				-1.2
3,895,097	+				+0.1
3,895,097	+				-1.6
3,895,097	+				+0.1
3,895,104	-				+1.9
3,895,104	-				+0.8
3,895,111	+				+0.7
3,895,111	+				-0.3
3,895,111	+				+1.3
3,895,111	+				-0.6
3,895,111	+				+0.8
3,895,111	+				-1.4
3,895,111	+				-0.8
3,895,111	+				+0.6
3,895,111	+				+0.2
3,895,111	+				-0.6
3,895,111	+				-2.0
3,895,111	+				-0.4
3,895,111	+				-1.0
3,895,111	+				-1.4
3,895,111	+				+1.1
3,895,111	+				-0.2
3,895,111	+				+0.3
3,895,111	+				-0.1
3,895,111	+				+0.6
3,895,111	+				+0.6
3,895,111	+				+0.3
3,895,111	+				-1.2
3,895,112	-				-3.0
3,895,112	-				+1.3
3,895,112	-				-0.1
3,895,112	-				-0.4
3,895,112	-				-0.4
3,895,112	-				+0.3
3,895,112	-				+0.4
3,895,112	-				+0.8
3,895,112	-				-1.7
3,895,112	-				+0.3
3,895,112	-				-4.2
3,895,112	-				+0.8
3,895,112	-				+1.5
3,895,112	-				+1.7
3,895,113	+				-0.5
3,895,113	+				-0.4
3,895,113	+				-1.1
3,895,113	+				-1.6
3,895,113	+				-0.6
3,895,113	+				+0.6
3,895,113	+				-0.9
3,895,113	+				+0.7
3,895,113	+				+0.5
3,895,113	+				-0.8
3,895,113	+				+0.5
3,895,113	+				-0.5
3,895,113	+				-3.1
3,895,114	-				-0.3
3,895,114	-				+0.6
3,895,114	-				-2.0
3,895,114	-				-0.0
3,895,118	+				-3.0
3,895,118	+				-0.4
3,895,118	+				+2.8
3,895,118	+				-1.4
3,895,118	+				+0.6
3,895,119	-				+1.4
3,895,119	-				-2.2
3,895,119	-				-2.2
3,895,119	-				+2.3
3,895,129	-				-3.3
3,895,166	+				-1.5
3,895,167	-				-1.2
3,895,167	-				+0.0
3,895,167	-				+0.6
3,895,173	+				+1.4
3,895,232	+				+0.3
3,895,238	+				+1.5
3,895,239	-				+1.6
3,895,252	+				-0.3
3,895,253	-				+1.8
3,895,253	-				+0.6
3,895,266	-				-1.0
3,895,291	+				+0.4
3,895,291	+				-2.9
3,895,291	+				-2.4
3,895,291	+				-0.4
3,895,292	-				-0.0
3,895,292	-				-0.5
3,895,292	-				-0.2
3,895,323	+				+0.4
3,895,324	-				-0.9
3,895,324	-				-3.5
3,895,324	-				+2.5
3,895,324	-				+0.4
3,895,324	-				-2.1
3,895,324	-				+0.7
3,895,324	-				-0.8
3,895,324	-				-0.2
3,895,345	+				+0.1
3,895,346	-				+1.0
3,895,346	-				-0.8
3,895,348	+				+0.3
3,895,348	+				+1.3
3,895,348	+				-2.4
3,895,348	+				-2.3
3,895,348	+				-1.3
3,895,348	+				-1.9
3,895,348	+				-2.1
3,895,349	-				+1.2
3,895,349	-				+1.1
3,895,349	-				-2.7
3,895,349	-				-0.5
3,895,349	-				+0.9
3,895,349	-				+0.8
3,895,349	-				+0.8
3,895,349	-				-0.9
3,895,364	+				+0.4
3,895,364	+				-0.3
3,895,375	+				-1.9
3,895,376	-				-0.2
3,895,376	-				+0.7
3,895,379	+				+2.1
3,895,379	+				-1.7
3,895,380	-				-2.4
3,895,380	-				-0.8
3,895,396	+		EFB2_03721	0.11	+1.1
3,895,396	+		EFB2_03721	0.11	+2.0
3,895,396	+		EFB2_03721	0.11	-0.4
3,895,397	-		EFB2_03721	0.11	-0.7
3,895,397	-		EFB2_03721	0.11	-3.6
3,895,442	+		EFB2_03721	0.13	+1.8
3,895,442	+		EFB2_03721	0.13	-1.3
3,895,443	-		EFB2_03721	0.13	-0.0
3,895,500	+		EFB2_03721	0.16	+0.3
3,895,500	+		EFB2_03721	0.16	-0.1
3,895,510	+		EFB2_03721	0.16	+1.8
3,895,510	+		EFB2_03721	0.16	-1.6
3,895,510	+		EFB2_03721	0.16	+0.8
3,895,510	+		EFB2_03721	0.16	-2.4
3,895,511	-		EFB2_03721	0.16	+0.9
3,895,583	+		EFB2_03721	0.20	-1.6
3,895,583	+		EFB2_03721	0.20	-0.4
3,895,584	-		EFB2_03721	0.20	-2.3
3,895,584	-		EFB2_03721	0.20	+1.5
3,895,588	+		EFB2_03721	0.20	+0.9
3,895,588	+		EFB2_03721	0.20	-1.2
3,895,589	-		EFB2_03721	0.20	+0.8
3,895,604	-		EFB2_03721	0.21	-0.1
3,895,707	+		EFB2_03721	0.26	+0.3
3,895,707	+		EFB2_03721	0.26	-0.1
3,895,707	+		EFB2_03721	0.26	+1.7
3,895,707	+		EFB2_03721	0.26	-0.9
3,895,708	-		EFB2_03721	0.26	-0.8
3,895,708	-		EFB2_03721	0.26	-2.1
3,895,708	-		EFB2_03721	0.26	+2.1
3,895,721	+		EFB2_03721	0.27	-0.2
3,895,721	+		EFB2_03721	0.27	+0.0
3,895,721	+		EFB2_03721	0.27	-0.5
3,895,721	+		EFB2_03721	0.27	+0.5
3,895,721	+		EFB2_03721	0.27	+0.3
3,895,721	+		EFB2_03721	0.27	-3.0
3,895,721	+		EFB2_03721	0.27	+1.5
3,895,721	+		EFB2_03721	0.27	+1.2
3,895,721	+		EFB2_03721	0.27	-2.4
3,895,721	+		EFB2_03721	0.27	+1.9
3,895,721	+		EFB2_03721	0.27	-0.6
3,895,721	+		EFB2_03721	0.27	+0.9
3,895,721	+		EFB2_03721	0.27	+0.1
3,895,721	+		EFB2_03721	0.27	+1.0
3,895,722	-		EFB2_03721	0.27	+1.0
3,895,722	-		EFB2_03721	0.27	-2.1
3,895,722	-		EFB2_03721	0.27	+0.4
3,895,722	-		EFB2_03721	0.27	+0.5
3,895,722	-		EFB2_03721	0.27	-0.4
3,895,722	-		EFB2_03721	0.27	+0.5
3,895,722	-		EFB2_03721	0.27	-0.2
3,895,722	-		EFB2_03721	0.27	-0.5
3,895,722	-		EFB2_03721	0.27	+0.4
3,895,722	-		EFB2_03721	0.27	-2.3
3,895,723	+		EFB2_03721	0.27	-1.6
3,895,723	+		EFB2_03721	0.27	+0.2
3,895,723	+		EFB2_03721	0.27	-0.1
3,895,723	+		EFB2_03721	0.27	+1.4
3,895,723	+		EFB2_03721	0.27	+1.2
3,895,723	+		EFB2_03721	0.27	+0.2
3,895,723	+		EFB2_03721	0.27	-0.3
3,895,723	+		EFB2_03721	0.27	+0.3
3,895,724	-		EFB2_03721	0.27	+1.2
3,895,724	-		EFB2_03721	0.27	-0.4
3,895,724	-		EFB2_03721	0.27	+0.2
3,895,724	-		EFB2_03721	0.27	-1.0
3,895,724	-		EFB2_03721	0.27	+1.2
3,895,724	-		EFB2_03721	0.27	-2.1
3,895,724	-		EFB2_03721	0.27	-0.7
3,895,724	-		EFB2_03721	0.27	-0.5
3,895,724	-		EFB2_03721	0.27	+0.0
3,895,724	-		EFB2_03721	0.27	+1.5
3,895,772	+		EFB2_03721	0.29	-0.1
3,895,773	-		EFB2_03721	0.29	-0.6
3,895,800	+		EFB2_03721	0.31	-0.3
3,895,824	+		EFB2_03721	0.32	+0.5
3,895,825	-		EFB2_03721	0.32	+1.3
3,895,889	+		EFB2_03721	0.35	+1.9
3,895,890	-		EFB2_03721	0.35	-0.5
3,895,890	-		EFB2_03721	0.35	-0.3
3,895,895	+		EFB2_03721	0.35	-2.1
3,895,896	-		EFB2_03721	0.35	+0.7
3,895,896	-		EFB2_03721	0.35	-0.6
3,895,951	+		EFB2_03721	0.38	+0.1
3,895,951	+		EFB2_03721	0.38	+1.0
3,895,951	+		EFB2_03721	0.38	-0.7
3,895,952	-		EFB2_03721	0.38	+1.1
3,895,952	-		EFB2_03721	0.38	+0.0
3,895,952	-		EFB2_03721	0.38	+2.1
3,895,952	-		EFB2_03721	0.38	+0.2
3,895,967	+		EFB2_03721	0.39	+0.2
3,895,968	-		EFB2_03721	0.39	+0.8
3,895,968	-		EFB2_03721	0.39	+0.6
3,895,994	+		EFB2_03721	0.40	-1.4
3,895,994	+		EFB2_03721	0.40	-0.8
3,896,023	+		EFB2_03721	0.41	+1.0
3,896,023	+		EFB2_03721	0.41	-0.6
3,896,023	+		EFB2_03721	0.41	+2.1
3,896,023	+		EFB2_03721	0.41	+0.3
3,896,024	-		EFB2_03721	0.42	+0.5
3,896,024	-		EFB2_03721	0.42	-1.2
3,896,024	-		EFB2_03721	0.42	+0.6
3,896,089	+		EFB2_03721	0.45	-1.6
3,896,090	-		EFB2_03721	0.45	-3.1
3,896,090	-		EFB2_03721	0.45	+0.3
3,896,121	+		EFB2_03721	0.46	+0.7
3,896,122	-		EFB2_03721	0.46	-0.3
3,896,122	-		EFB2_03721	0.46	+0.6
3,896,135	+		EFB2_03721	0.47	+1.8
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