Strain Fitness in Escherichia fergusonii Becca around EFB2_02681

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,836,280	+				-1.0
2,836,280	+				-1.2
2,836,281	-				+0.7
2,836,281	-				+2.0
2,836,281	-				+0.8
2,836,302	-				+0.3
2,836,396	+		EFB2_02680	0.11	-2.0
2,836,396	+		EFB2_02680	0.11	+0.8
2,836,471	-		EFB2_02680	0.19	-1.3
2,836,474	+		EFB2_02680	0.19	-2.2
2,836,474	+		EFB2_02680	0.19	+0.7
2,836,474	+		EFB2_02680	0.19	-0.7
2,836,475	-		EFB2_02680	0.19	-0.9
2,836,475	-		EFB2_02680	0.19	-0.8
2,836,475	-		EFB2_02680	0.19	+1.2
2,836,475	-		EFB2_02680	0.19	+0.4
2,836,475	-		EFB2_02680	0.19	-0.7
2,836,475	-		EFB2_02680	0.19	-2.0
2,836,488	+		EFB2_02680	0.21	-0.1
2,836,489	-		EFB2_02680	0.21	-2.3
2,836,489	-		EFB2_02680	0.21	+0.7
2,836,489	-		EFB2_02680	0.21	+0.2
2,836,535	+		EFB2_02680	0.26	+2.2
2,836,535	+		EFB2_02680	0.26	-2.4
2,836,535	+		EFB2_02680	0.26	-1.8
2,836,535	+		EFB2_02680	0.26	+1.2
2,836,535	+		EFB2_02680	0.26	-0.3
2,836,535	+		EFB2_02680	0.26	-1.0
2,836,536	-		EFB2_02680	0.26	+1.6
2,836,536	-		EFB2_02680	0.26	+0.2
2,836,536	-		EFB2_02680	0.26	+1.2
2,836,536	-		EFB2_02680	0.26	-0.5
2,836,536	-		EFB2_02680	0.26	+0.9
2,836,536	-		EFB2_02680	0.26	-0.3
2,836,536	-		EFB2_02680	0.26	+0.6
2,836,536	-		EFB2_02680	0.26	-2.3
2,836,536	-		EFB2_02680	0.26	-2.7
2,836,536	-		EFB2_02680	0.26	+1.3
2,836,536	-		EFB2_02680	0.26	+0.3
2,836,555	+		EFB2_02680	0.28	+0.3
2,836,555	+		EFB2_02680	0.28	+0.7
2,836,555	+		EFB2_02680	0.28	+1.0
2,836,555	+		EFB2_02680	0.28	+0.2
2,836,556	-		EFB2_02680	0.28	+0.9
2,836,556	-		EFB2_02680	0.28	+2.5
2,836,556	-		EFB2_02680	0.28	-0.6
2,836,556	-		EFB2_02680	0.28	-1.5
2,836,556	-		EFB2_02680	0.28	+1.6
2,836,598	-		EFB2_02680	0.33	-0.5
2,836,598	-		EFB2_02680	0.33	+1.5
2,836,665	+		EFB2_02680	0.40	+2.5
2,836,665	+		EFB2_02680	0.40	-1.7
2,836,665	+		EFB2_02680	0.40	-1.6
2,836,666	-		EFB2_02680	0.40	-0.6
2,836,666	-		EFB2_02680	0.40	+1.2
2,836,666	-		EFB2_02680	0.40	-0.5
2,836,666	-		EFB2_02680	0.40	-2.1
2,836,666	-		EFB2_02680	0.40	-2.0
2,836,666	-		EFB2_02680	0.40	+0.8
2,836,666	-		EFB2_02680	0.40	-1.5
2,836,666	-		EFB2_02680	0.40	+3.9
2,836,827	-		EFB2_02680	0.58	-3.2
2,836,844	+		EFB2_02680	0.60	+1.2
2,836,844	+		EFB2_02680	0.60	-1.8
2,836,844	+		EFB2_02680	0.60	-1.1
2,836,844	+		EFB2_02680	0.60	+1.4
2,836,844	+		EFB2_02680	0.60	-1.2
2,836,844	+		EFB2_02680	0.60	+0.9
2,836,845	-		EFB2_02680	0.60	+3.1
2,836,845	-		EFB2_02680	0.60	+0.3
2,836,845	-		EFB2_02680	0.60	+0.3
2,836,902	+		EFB2_02680	0.66	+2.4
2,836,903	-		EFB2_02680	0.66	-0.1
2,836,903	-		EFB2_02680	0.66	+0.2
2,836,903	-		EFB2_02680	0.66	-1.1
2,836,903	-		EFB2_02680	0.66	+0.8
2,836,961	+		EFB2_02680	0.73	-1.5
2,837,010	+		EFB2_02680	0.78	-1.2
2,837,018	+		EFB2_02680	0.79	+2.6
2,837,051	-		EFB2_02680	0.83	+1.7
2,837,077	+		EFB2_02680	0.85	+1.4
2,837,078	-		EFB2_02680	0.86	-2.3
2,837,078	-		EFB2_02680	0.86	-0.1
2,837,078	-		EFB2_02680	0.86	+2.0
2,837,078	-		EFB2_02680	0.86	-1.5
2,837,103	+		EFB2_02680	0.88	-1.0
2,837,109	+		EFB2_02680	0.89	+2.4
2,837,109	+		EFB2_02680	0.89	+0.3
2,837,109	+		EFB2_02680	0.89	-0.7
2,837,110	-		EFB2_02680	0.89	+0.1
2,837,110	-		EFB2_02680	0.89	+0.4
2,837,110	-		EFB2_02680	0.89	+1.1
2,837,110	-		EFB2_02680	0.89	+0.6
2,837,197	-				-0.3
2,837,200	+				-0.3
2,837,200	+				+0.5
2,837,200	+				-0.8
2,837,200	+				-2.2
2,837,200	+				-0.7
2,837,200	+				+0.3
2,837,200	+				+0.6
2,837,200	+				-1.8
2,837,201	-				+1.0
2,837,201	-				+1.5
2,837,201	-				-0.5
2,837,201	-				+1.3
2,837,201	-				+0.8
2,837,201	-				+0.5
2,837,201	-				-1.0
2,837,201	-				+0.5
2,837,201	-				+2.6
2,837,201	-				-3.0
2,837,201	-				-0.5
2,837,222	-				+1.1
2,837,222	-				+0.6
2,837,255	-				-1.3
2,837,255	-				-1.0
2,837,255	-				-0.8
2,837,256	+				-0.1
2,837,256	+				-1.2
2,837,256	+				+0.2
2,837,256	+				+1.5
2,837,256	+				+1.5
2,837,256	+				-0.5
2,837,256	+				-1.0
2,837,256	+				-1.5
2,837,256	+				-0.5
2,837,256	+				+0.2
2,837,256	+				-0.4
2,837,256	+				+1.5
2,837,256	+				-0.7
2,837,256	+				+0.7
2,837,256	+				+2.2
2,837,256	+				-2.2
2,837,256	+				-0.3
2,837,256	+				-0.7
2,837,256	+				+0.5
2,837,256	+				-0.1
2,837,257	-				-0.5
2,837,257	-				+0.7
2,837,257	-				-2.4
2,837,257	-				-1.4
2,837,257	-				+1.6
2,837,257	-				-0.1
2,837,257	-				+0.9
2,837,257	-				+0.9
2,837,257	-				+0.9
2,837,257	-				-2.8
2,837,257	-				-1.5
2,837,257	-				+0.8
2,837,257	-				+0.6
2,837,257	-				+0.7
2,837,257	-				-0.1
2,837,257	-				-1.4
2,837,257	-				+0.2
2,837,257	-				+2.6
2,837,257	-				+0.3
2,837,257	-				-0.9
2,837,257	-				+0.3
2,837,257	-				+0.3
2,837,257	-				-0.1
2,837,257	-				+0.6
2,837,257	-				-1.0
2,837,257	-				-0.1
2,837,257	-				-0.5
2,837,257	-				+0.7
2,837,257	-				+3.3
2,837,257	-				-0.2
2,837,257	-				-0.7
2,837,257	-				-1.3
2,837,257	-				-0.6
2,837,257	-				+1.1
2,837,257	-				+1.3
2,837,257	-				-0.4
2,837,257	-				-0.1
2,837,257	-				-2.4
2,837,257	-				-0.7
2,837,257	-				+0.0
2,837,257	-				-0.6
2,837,257	-				-2.9
2,837,257	-				+1.0
2,837,257	-				+0.3
2,837,257	-				-2.6
2,837,276	+				-2.5
2,837,276	+				-0.5
2,837,316	+		EFB2_02681	0.10	-1.8
2,837,316	+		EFB2_02681	0.10	-1.0
2,837,316	+		EFB2_02681	0.10	-0.7
2,837,316	+		EFB2_02681	0.10	-1.5
2,837,316	+		EFB2_02681	0.10	-0.7
2,837,316	+		EFB2_02681	0.10	-1.4
2,837,316	+		EFB2_02681	0.10	+1.9
2,837,317	-		EFB2_02681	0.10	-1.7
2,837,317	-		EFB2_02681	0.10	-0.1
2,837,317	-		EFB2_02681	0.10	-0.4
2,837,317	-		EFB2_02681	0.10	+1.4
2,837,317	-		EFB2_02681	0.10	+0.3
2,837,317	-		EFB2_02681	0.10	+0.0
2,837,317	-		EFB2_02681	0.10	-0.3
2,837,323	-		EFB2_02681	0.11	-1.4
2,837,323	-		EFB2_02681	0.11	+1.1
2,837,323	-		EFB2_02681	0.11	-2.9
2,837,323	-		EFB2_02681	0.11	-2.3
2,837,323	-		EFB2_02681	0.11	-1.3
2,837,323	-		EFB2_02681	0.11	+0.6
2,837,330	-		EFB2_02681	0.12	+0.7
2,837,330	-		EFB2_02681	0.12	-1.7
2,837,330	-		EFB2_02681	0.12	-3.4
2,837,383	+		EFB2_02681	0.17	-2.4
2,837,384	-		EFB2_02681	0.17	-1.8
2,837,384	-		EFB2_02681	0.17	+0.1
2,837,384	-		EFB2_02681	0.17	-0.1
2,837,384	-		EFB2_02681	0.17	-2.8
2,837,384	-		EFB2_02681	0.17	+2.0
2,837,384	-		EFB2_02681	0.17	+0.9
2,837,414	+		EFB2_02681	0.21	+2.8
2,837,414	+		EFB2_02681	0.21	+2.6
2,837,414	+		EFB2_02681	0.21	-0.1
2,837,414	+		EFB2_02681	0.21	+2.2
2,837,414	+		EFB2_02681	0.21	-0.7
2,837,415	-		EFB2_02681	0.21	+0.5
2,837,415	-		EFB2_02681	0.21	-3.2
2,837,415	-		EFB2_02681	0.21	-0.5
2,837,438	+		EFB2_02681	0.23	+0.9
2,837,438	+		EFB2_02681	0.23	+2.1
2,837,439	-		EFB2_02681	0.23	-1.6
2,837,439	-		EFB2_02681	0.23	-2.2
2,837,440	+		EFB2_02681	0.24	-2.7
2,837,440	+		EFB2_02681	0.24	-0.5
2,837,440	+		EFB2_02681	0.24	-1.7
2,837,440	+		EFB2_02681	0.24	-2.3
2,837,440	+		EFB2_02681	0.24	+0.7
2,837,440	+		EFB2_02681	0.24	+1.1
2,837,440	+		EFB2_02681	0.24	+1.6
2,837,440	+		EFB2_02681	0.24	+1.1
2,837,440	+		EFB2_02681	0.24	+0.3
2,837,440	+		EFB2_02681	0.24	-0.3
2,837,441	-		EFB2_02681	0.24	+1.3
2,837,441	-		EFB2_02681	0.24	-1.0
2,837,441	-		EFB2_02681	0.24	-2.0
2,837,441	-		EFB2_02681	0.24	-3.1
2,837,441	-		EFB2_02681	0.24	-0.7
2,837,441	-		EFB2_02681	0.24	-2.3
2,837,441	-		EFB2_02681	0.24	-2.1
2,837,441	-		EFB2_02681	0.24	-1.5
2,837,441	-		EFB2_02681	0.24	-2.6
2,837,441	-		EFB2_02681	0.24	+0.0
2,837,441	-		EFB2_02681	0.24	+0.7
2,837,441	-		EFB2_02681	0.24	-2.0
2,837,441	-		EFB2_02681	0.24	+1.5
2,837,470	-		EFB2_02681	0.27	+0.3
2,837,498	+		EFB2_02681	0.30	+0.2
2,837,499	-		EFB2_02681	0.30	-1.5
2,837,499	-		EFB2_02681	0.30	-2.6
2,837,499	-		EFB2_02681	0.30	+1.5
2,837,503	-		EFB2_02681	0.30	-1.3
2,837,503	-		EFB2_02681	0.30	+0.8
2,837,522	+		EFB2_02681	0.32	-1.0
2,837,523	-		EFB2_02681	0.33	+2.1
2,837,523	-		EFB2_02681	0.33	-2.0
2,837,528	+		EFB2_02681	0.33	+0.2
2,837,529	-		EFB2_02681	0.33	-1.5
2,837,542	-		EFB2_02681	0.35	+0.3
2,837,555	+		EFB2_02681	0.36	-0.5
2,837,568	-		EFB2_02681	0.37	-0.8
2,837,590	+		EFB2_02681	0.40	+1.5
2,837,590	+		EFB2_02681	0.40	+0.1
2,837,590	+		EFB2_02681	0.40	-2.5
2,837,590	+		EFB2_02681	0.40	+1.7
2,837,590	+		EFB2_02681	0.40	+1.3
2,837,590	+		EFB2_02681	0.40	-1.8
2,837,591	-		EFB2_02681	0.40	+1.9
2,837,591	-		EFB2_02681	0.40	-1.2
2,837,591	-		EFB2_02681	0.40	+2.1
2,837,591	-		EFB2_02681	0.40	+1.2
2,837,685	+		EFB2_02681	0.50	-1.2
2,837,686	-		EFB2_02681	0.50	-0.0
2,837,686	-		EFB2_02681	0.50	-0.2
2,837,686	-		EFB2_02681	0.50	-2.0
2,837,686	-		EFB2_02681	0.50	+2.6
2,837,694	+		EFB2_02681	0.51	-0.1
2,837,694	+		EFB2_02681	0.51	-2.2
2,837,694	+		EFB2_02681	0.51	-1.2
2,837,694	+		EFB2_02681	0.51	+1.2
2,837,694	+		EFB2_02681	0.51	+0.4
2,837,695	-		EFB2_02681	0.51	-0.5
2,837,695	-		EFB2_02681	0.51	-2.6
2,837,695	-		EFB2_02681	0.51	-2.3
2,837,695	-		EFB2_02681	0.51	+1.9
2,837,695	-		EFB2_02681	0.51	-2.7
2,837,695	-		EFB2_02681	0.51	+1.1
2,837,695	-		EFB2_02681	0.51	-1.6
2,837,695	-		EFB2_02681	0.51	+1.9
2,837,697	+		EFB2_02681	0.51	-0.3
2,837,698	-		EFB2_02681	0.52	-1.5
2,837,698	-		EFB2_02681	0.52	-3.5
2,837,756	+		EFB2_02681	0.58	+2.7
2,837,756	+		EFB2_02681	0.58	-1.4
2,837,757	-		EFB2_02681	0.58	+1.6
2,837,757	-		EFB2_02681	0.58	+1.1
2,837,757	-		EFB2_02681	0.58	+0.5
2,837,758	+		EFB2_02681	0.58	-1.1
2,837,758	+		EFB2_02681	0.58	-2.3
2,837,758	+		EFB2_02681	0.58	-1.8
2,837,758	+		EFB2_02681	0.58	-0.3
2,837,758	+		EFB2_02681	0.58	-0.7
2,837,758	+		EFB2_02681	0.58	+1.5
2,837,759	-		EFB2_02681	0.58	-2.5
2,837,759	-		EFB2_02681	0.58	-0.9
2,837,759	-		EFB2_02681	0.58	+0.5
2,837,759	-		EFB2_02681	0.58	-0.2
2,837,759	-		EFB2_02681	0.58	+1.1
2,837,759	-		EFB2_02681	0.58	+1.5
2,837,759	-		EFB2_02681	0.58	-0.6
2,837,805	-		EFB2_02681	0.63	+1.9
2,837,815	-		EFB2_02681	0.64	+0.7
2,837,815	-		EFB2_02681	0.64	-0.8
2,837,893	+		EFB2_02681	0.73	+0.9
2,837,893	+		EFB2_02681	0.73	-0.1
2,837,900	+		EFB2_02681	0.74	-1.1
2,837,901	-		EFB2_02681	0.74	+1.5
2,837,901	-		EFB2_02681	0.74	-2.9
2,837,901	-		EFB2_02681	0.74	+2.1
2,837,902	+		EFB2_02681	0.74	-0.1
2,837,903	-		EFB2_02681	0.74	-0.8
2,837,903	-		EFB2_02681	0.74	-2.8
2,837,903	-		EFB2_02681	0.74	-0.5
2,837,903	-		EFB2_02681	0.74	+1.2
2,837,903	-		EFB2_02681	0.74	+1.3
2,837,903	-		EFB2_02681	0.74	-1.8
2,837,906	+		EFB2_02681	0.74	-0.7
2,837,906	+		EFB2_02681	0.74	-0.8
2,837,947	+		EFB2_02681	0.79	-0.4
2,837,948	-		EFB2_02681	0.79	-0.8
2,837,956	+		EFB2_02681	0.80	+1.4
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