Strain Fitness in Escherichia fergusonii Becca around EFB2_01526

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,597,934	+				+0.5
1,597,934	+				-2.1
1,597,934	+				-0.3
1,597,934	+				-3.1
1,597,934	+				-3.1
1,597,934	+				+0.6
1,597,934	+				+0.6
1,597,934	+				+1.4
1,597,934	+				+1.3
1,597,934	+				+0.3
1,597,935	-				-0.3
1,597,935	-				+0.3
1,597,935	-				+0.3
1,597,935	-				+1.3
1,597,935	-				+1.6
1,597,935	-				-1.3
1,597,935	-				-1.1
1,597,935	-				-1.5
1,597,935	-				-0.3
1,597,935	-				-0.4
1,597,935	-				+0.5
1,597,935	-				+1.6
1,597,935	-				-0.3
1,597,935	-				-1.3
1,597,935	-				-3.0
1,597,935	-				-2.3
1,597,935	-				-1.2
1,597,935	-				+1.2
1,597,935	-				-0.9
1,597,935	-				-2.8
1,597,935	-				+1.3
1,597,939	+				-0.1
1,597,971	+		EFB2_01524	0.12	+1.5
1,597,980	+		EFB2_01524	0.14	-1.0
1,597,981	-		EFB2_01524	0.14	-0.8
1,598,016	+		EFB2_01524	0.22	-0.1
1,598,016	+		EFB2_01524	0.22	+0.9
1,598,016	+		EFB2_01524	0.22	+0.3
1,598,016	+		EFB2_01524	0.22	-2.1
1,598,017	-		EFB2_01524	0.22	-0.4
1,598,017	-		EFB2_01524	0.22	+0.1
1,598,017	-		EFB2_01524	0.22	+0.6
1,598,017	-		EFB2_01524	0.22	+1.1
1,598,017	-		EFB2_01524	0.22	+0.2
1,598,017	-		EFB2_01524	0.22	+1.6
1,598,019	+		EFB2_01524	0.22	+0.9
1,598,019	+		EFB2_01524	0.22	+0.0
1,598,019	+		EFB2_01524	0.22	+0.6
1,598,019	+		EFB2_01524	0.22	-0.4
1,598,019	+		EFB2_01524	0.22	+0.5
1,598,020	-		EFB2_01524	0.23	-0.9
1,598,020	-		EFB2_01524	0.23	+0.6
1,598,020	-		EFB2_01524	0.23	+1.2
1,598,020	-		EFB2_01524	0.23	+0.7
1,598,020	-		EFB2_01524	0.23	+0.8
1,598,031	+		EFB2_01524	0.25	+0.7
1,598,031	+		EFB2_01524	0.25	+1.5
1,598,031	+		EFB2_01524	0.25	-0.3
1,598,031	+		EFB2_01524	0.25	-4.3
1,598,031	+		EFB2_01524	0.25	-0.5
1,598,031	+		EFB2_01524	0.25	-2.3
1,598,031	+		EFB2_01524	0.25	+2.1
1,598,032	-		EFB2_01524	0.25	-1.4
1,598,032	-		EFB2_01524	0.25	-1.5
1,598,032	-		EFB2_01524	0.25	-1.5
1,598,077	-		EFB2_01524	0.34	+0.7
1,598,086	-		EFB2_01524	0.36	+2.3
1,598,086	-		EFB2_01524	0.36	+0.8
1,598,086	-		EFB2_01524	0.36	-1.9
1,598,107	+		EFB2_01524	0.41	+0.5
1,598,107	+		EFB2_01524	0.41	+0.8
1,598,107	+		EFB2_01524	0.41	+0.8
1,598,107	+		EFB2_01524	0.41	+1.9
1,598,107	+		EFB2_01524	0.41	+0.7
1,598,107	+		EFB2_01524	0.41	+1.3
1,598,107	+		EFB2_01524	0.41	-1.1
1,598,107	+		EFB2_01524	0.41	+0.0
1,598,107	+		EFB2_01524	0.41	+0.4
1,598,107	+		EFB2_01524	0.41	+0.7
1,598,107	+		EFB2_01524	0.41	+0.6
1,598,108	-		EFB2_01524	0.41	-1.7
1,598,108	-		EFB2_01524	0.41	+1.0
1,598,108	-		EFB2_01524	0.41	+2.7
1,598,108	-		EFB2_01524	0.41	+0.1
1,598,108	-		EFB2_01524	0.41	+0.5
1,598,108	-		EFB2_01524	0.41	+1.8
1,598,108	-		EFB2_01524	0.41	-1.1
1,598,108	-		EFB2_01524	0.41	+0.7
1,598,108	-		EFB2_01524	0.41	-1.4
1,598,108	-		EFB2_01524	0.41	-0.7
1,598,108	-		EFB2_01524	0.41	+1.2
1,598,185	+		EFB2_01524	0.57	-1.5
1,598,186	-		EFB2_01524	0.57	+0.0
1,598,186	-		EFB2_01524	0.57	-2.2
1,598,186	-		EFB2_01524	0.57	-2.6
1,598,234	+		EFB2_01524	0.67	+0.4
1,598,234	+		EFB2_01524	0.67	-0.3
1,598,234	+		EFB2_01524	0.67	-0.5
1,598,234	+		EFB2_01524	0.67	+0.6
1,598,235	-		EFB2_01524	0.67	+0.0
1,598,235	-		EFB2_01524	0.67	-1.9
1,598,235	-		EFB2_01524	0.67	+0.7
1,598,362	+				-1.8
1,598,363	-				+1.0
1,598,363	-				-2.4
1,598,372	+				-0.3
1,598,372	+				-0.8
1,598,372	+				-0.6
1,598,372	+				+0.0
1,598,373	-				-1.7
1,598,373	-				-1.0
1,598,373	-				-0.3
1,598,383	+				+0.8
1,598,383	+				-1.8
1,598,383	+				-3.1
1,598,395	+				-0.3
1,598,395	+				-0.6
1,598,396	-				+0.8
1,598,396	-				+0.1
1,598,396	-				+1.3
1,598,405	-				-0.0
1,598,422	+				-2.9
1,598,423	-				+0.3
1,598,423	-				+0.8
1,598,478	+		EFB2_01525	0.17	-0.6
1,598,488	+		EFB2_01525	0.19	+0.7
1,598,488	+		EFB2_01525	0.19	-0.3
1,598,489	-		EFB2_01525	0.19	-0.6
1,598,496	-		EFB2_01525	0.20	-0.1
1,598,640	+		EFB2_01525	0.48	-2.2
1,598,640	+		EFB2_01525	0.48	+0.8
1,598,641	-		EFB2_01525	0.48	-2.1
1,598,777	+		EFB2_01525	0.74	-0.2
1,598,777	+		EFB2_01525	0.74	-3.5
1,598,777	+		EFB2_01525	0.74	+1.3
1,598,813	+		EFB2_01525	0.80	+0.2
1,598,813	+		EFB2_01525	0.80	-0.7
1,598,814	-		EFB2_01525	0.81	+0.3
1,598,814	-		EFB2_01525	0.81	+0.9
1,598,814	-		EFB2_01525	0.81	-0.1
1,598,829	-		EFB2_01525	0.84	+0.3
1,598,913	+				-1.5
1,598,913	+				-0.4
1,598,913	+				-2.4
1,598,913	+				-0.3
1,598,913	+				+1.5
1,598,913	+				-3.3
1,598,913	+				+1.3
1,598,913	+				+0.6
1,598,913	+				+2.3
1,598,913	+				-0.7
1,598,914	-				+1.8
1,598,914	-				+1.8
1,598,914	-				+1.5
1,598,914	-				-0.5
1,598,914	-				-2.7
1,598,914	-				+0.3
1,598,914	-				-0.1
1,598,914	-				+0.5
1,598,914	-				+0.4
1,598,914	-				-0.4
1,598,914	-				-2.0
1,598,914	-				+1.2
1,598,914	-				-0.3
1,598,967	+				+0.2
1,598,968	-				+1.7
1,598,968	-				-0.4
1,598,968	-				-0.9
1,598,968	-				-0.7
1,598,968	-				-2.0
1,599,031	-		EFB2_01526	0.14	+0.8
1,599,046	+		EFB2_01526	0.15	-1.5
1,599,047	-		EFB2_01526	0.15	+0.7
1,599,049	+		EFB2_01526	0.16	+2.1
1,599,049	+		EFB2_01526	0.16	+0.5
1,599,049	+		EFB2_01526	0.16	-2.0
1,599,049	+		EFB2_01526	0.16	-1.7
1,599,049	+		EFB2_01526	0.16	+0.1
1,599,049	+		EFB2_01526	0.16	+0.2
1,599,050	-		EFB2_01526	0.16	-2.5
1,599,050	-		EFB2_01526	0.16	+1.8
1,599,050	-		EFB2_01526	0.16	-0.4
1,599,050	-		EFB2_01526	0.16	+1.4
1,599,050	-		EFB2_01526	0.16	-1.4
1,599,050	-		EFB2_01526	0.16	+0.9
1,599,050	-		EFB2_01526	0.16	-0.1
1,599,082	+		EFB2_01526	0.20	+1.6
1,599,083	-		EFB2_01526	0.20	-0.5
1,599,091	+		EFB2_01526	0.21	+0.1
1,599,091	+		EFB2_01526	0.21	+1.4
1,599,091	+		EFB2_01526	0.21	-1.0
1,599,091	+		EFB2_01526	0.21	-0.5
1,599,091	+		EFB2_01526	0.21	+0.7
1,599,091	+		EFB2_01526	0.21	+0.3
1,599,091	+		EFB2_01526	0.21	+2.3
1,599,092	-		EFB2_01526	0.21	+0.2
1,599,092	-		EFB2_01526	0.21	+2.1
1,599,092	-		EFB2_01526	0.21	-1.7
1,599,092	-		EFB2_01526	0.21	-1.1
1,599,108	+		EFB2_01526	0.23	-1.5
1,599,108	+		EFB2_01526	0.23	-2.3
1,599,108	+		EFB2_01526	0.23	-2.0
1,599,108	+		EFB2_01526	0.23	+2.0
1,599,108	+		EFB2_01526	0.23	-0.7
1,599,108	+		EFB2_01526	0.23	-0.2
1,599,108	+		EFB2_01526	0.23	+0.4
1,599,108	+		EFB2_01526	0.23	+0.9
1,599,109	-		EFB2_01526	0.23	-1.1
1,599,109	-		EFB2_01526	0.23	+1.7
1,599,109	-		EFB2_01526	0.23	+0.7
1,599,109	-		EFB2_01526	0.23	+0.6
1,599,109	-		EFB2_01526	0.23	-1.3
1,599,109	-		EFB2_01526	0.23	+1.1
1,599,109	-		EFB2_01526	0.23	-1.0
1,599,109	-		EFB2_01526	0.23	+1.4
1,599,109	-		EFB2_01526	0.23	-4.4
1,599,128	+		EFB2_01526	0.25	+0.3
1,599,134	+		EFB2_01526	0.26	+0.4
1,599,134	+		EFB2_01526	0.26	-1.8
1,599,135	-		EFB2_01526	0.26	-2.7
1,599,135	-		EFB2_01526	0.26	-2.6
1,599,135	-		EFB2_01526	0.26	-0.8
1,599,187	+		EFB2_01526	0.32	+0.9
1,599,187	+		EFB2_01526	0.32	+1.7
1,599,188	-		EFB2_01526	0.32	+1.5
1,599,188	-		EFB2_01526	0.32	-1.7
1,599,188	-		EFB2_01526	0.32	+0.0
1,599,188	-		EFB2_01526	0.32	-0.2
1,599,188	-		EFB2_01526	0.32	-0.2
1,599,188	-		EFB2_01526	0.32	-0.5
1,599,188	-		EFB2_01526	0.32	+0.4
1,599,188	-		EFB2_01526	0.32	+2.2
1,599,188	-		EFB2_01526	0.32	+1.5
1,599,195	-		EFB2_01526	0.33	+0.7
1,599,226	+		EFB2_01526	0.37	-1.1
1,599,226	+		EFB2_01526	0.37	-2.0
1,599,226	+		EFB2_01526	0.37	-1.4
1,599,226	+		EFB2_01526	0.37	-2.0
1,599,226	+		EFB2_01526	0.37	-1.1
1,599,226	+		EFB2_01526	0.37	+0.2
1,599,226	+		EFB2_01526	0.37	-1.9
1,599,226	+		EFB2_01526	0.37	-0.6
1,599,226	+		EFB2_01526	0.37	+0.6
1,599,226	+		EFB2_01526	0.37	-1.2
1,599,226	+		EFB2_01526	0.37	+0.0
1,599,226	+		EFB2_01526	0.37	+0.7
1,599,226	+		EFB2_01526	0.37	-1.4
1,599,226	+		EFB2_01526	0.37	+2.2
1,599,226	+		EFB2_01526	0.37	+0.7
1,599,227	-		EFB2_01526	0.37	-2.9
1,599,227	-		EFB2_01526	0.37	-1.1
1,599,227	-		EFB2_01526	0.37	+0.9
1,599,227	-		EFB2_01526	0.37	-3.2
1,599,227	-		EFB2_01526	0.37	+1.8
1,599,227	-		EFB2_01526	0.37	+1.0
1,599,227	-		EFB2_01526	0.37	+2.1
1,599,227	-		EFB2_01526	0.37	-0.4
1,599,227	-		EFB2_01526	0.37	+0.0
1,599,227	-		EFB2_01526	0.37	+1.3
1,599,227	-		EFB2_01526	0.37	-0.2
1,599,227	-		EFB2_01526	0.37	+1.5
1,599,227	-		EFB2_01526	0.37	-0.5
1,599,227	-		EFB2_01526	0.37	-0.1
1,599,227	-		EFB2_01526	0.37	-3.1
1,599,227	-		EFB2_01526	0.37	-1.3
1,599,227	-		EFB2_01526	0.37	-2.1
1,599,227	-		EFB2_01526	0.37	-2.5
1,599,227	-		EFB2_01526	0.37	-1.6
1,599,244	-		EFB2_01526	0.39	+1.8
1,599,244	-		EFB2_01526	0.39	+0.9
1,599,267	+		EFB2_01526	0.42	-0.6
1,599,267	+		EFB2_01526	0.42	+1.1
1,599,267	+		EFB2_01526	0.42	+3.1
1,599,267	+		EFB2_01526	0.42	+1.3
1,599,267	+		EFB2_01526	0.42	-2.3
1,599,267	+		EFB2_01526	0.42	+0.3
1,599,267	+		EFB2_01526	0.42	+0.1
1,599,267	+		EFB2_01526	0.42	+0.8
1,599,267	+		EFB2_01526	0.42	+0.3
1,599,268	-		EFB2_01526	0.42	-1.0
1,599,268	-		EFB2_01526	0.42	+0.7
1,599,268	-		EFB2_01526	0.42	-0.7
1,599,268	-		EFB2_01526	0.42	+0.3
1,599,268	-		EFB2_01526	0.42	+1.7
1,599,268	-		EFB2_01526	0.42	-0.7
1,599,268	-		EFB2_01526	0.42	-1.2
1,599,268	-		EFB2_01526	0.42	-0.5
1,599,268	-		EFB2_01526	0.42	+1.4
1,599,268	-		EFB2_01526	0.42	+0.2
1,599,268	-		EFB2_01526	0.42	-1.0
1,599,268	-		EFB2_01526	0.42	-2.1
1,599,268	-		EFB2_01526	0.42	-0.4
1,599,268	-		EFB2_01526	0.42	+1.5
1,599,276	+		EFB2_01526	0.43	+2.6
1,599,277	-		EFB2_01526	0.43	+0.4
1,599,283	+		EFB2_01526	0.43	-0.9
1,599,283	+		EFB2_01526	0.43	-2.4
1,599,283	+		EFB2_01526	0.43	+0.8
1,599,284	-		EFB2_01526	0.44	-1.3
1,599,299	+		EFB2_01526	0.45	-2.0
1,599,299	+		EFB2_01526	0.45	-0.8
1,599,299	+		EFB2_01526	0.45	-0.5
1,599,299	+		EFB2_01526	0.45	+0.3
1,599,299	+		EFB2_01526	0.45	-0.1
1,599,299	+		EFB2_01526	0.45	+1.6
1,599,299	+		EFB2_01526	0.45	-0.1
1,599,299	+		EFB2_01526	0.45	-1.6
1,599,299	+		EFB2_01526	0.45	+0.5
1,599,300	-		EFB2_01526	0.45	+0.7
1,599,300	-		EFB2_01526	0.45	+1.5
1,599,300	-		EFB2_01526	0.45	+1.8
1,599,300	-		EFB2_01526	0.45	+1.3
1,599,300	-		EFB2_01526	0.45	+1.1
1,599,300	-		EFB2_01526	0.45	+1.9
1,599,300	-		EFB2_01526	0.45	-0.5
1,599,300	-		EFB2_01526	0.45	+1.8
1,599,317	+		EFB2_01526	0.47	-0.6
1,599,317	+		EFB2_01526	0.47	-0.8
1,599,318	-		EFB2_01526	0.48	-0.7
1,599,318	-		EFB2_01526	0.48	+0.9
1,599,318	-		EFB2_01526	0.48	-2.8
1,599,318	-		EFB2_01526	0.48	-3.4
1,599,318	-		EFB2_01526	0.48	-0.2
1,599,318	-		EFB2_01526	0.48	+1.4
1,599,328	+		EFB2_01526	0.49	+1.8
1,599,328	+		EFB2_01526	0.49	-1.5
1,599,328	+		EFB2_01526	0.49	+1.2
1,599,328	+		EFB2_01526	0.49	+1.0
1,599,328	+		EFB2_01526	0.49	-3.0
1,599,328	+		EFB2_01526	0.49	+1.1
1,599,328	+		EFB2_01526	0.49	+1.5
1,599,328	+		EFB2_01526	0.49	+1.2
1,599,328	+		EFB2_01526	0.49	+0.1
1,599,328	+		EFB2_01526	0.49	-2.3
1,599,328	+		EFB2_01526	0.49	-1.1
1,599,328	+		EFB2_01526	0.49	-0.5
1,599,328	+		EFB2_01526	0.49	-1.6
1,599,328	+		EFB2_01526	0.49	-2.1
1,599,328	+		EFB2_01526	0.49	-0.3
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1,600,411	-		EFB2_01527	0.60	+0.7
1,600,411	-		EFB2_01527	0.60	+0.5
1,600,411	-		EFB2_01527	0.60	+2.5
1,600,411	-		EFB2_01527	0.60	+0.6
1,600,411	-		EFB2_01527	0.60	+1.5
1,600,411	-		EFB2_01527	0.60	-0.8
1,600,411	-		EFB2_01527	0.60	+1.7
1,600,411	-		EFB2_01527	0.60	+0.9
1,600,429	+		EFB2_01527	0.63	-2.2
1,600,461	+		EFB2_01527	0.69	-0.8
1,600,462	-		EFB2_01527	0.69	-0.8
1,600,519	+		EFB2_01527	0.80	+1.2
1,600,555	+		EFB2_01527	0.86	+0.6
1,600,556	-		EFB2_01527	0.86	+1.8
1,600,556	-		EFB2_01527	0.86	+1.6
1,600,609	+				+0.4
1,600,610	-				+0.3
1,600,610	-				-3.5
1,600,610	-				+0.0
1,600,610	-				+0.7
1,600,610	-				-3.5
1,600,610	-				-2.3
1,600,610	-				+0.3
1,600,632	+				+0.0
1,600,632	+				-1.1
1,600,632	+				-0.5
1,600,632	+				-0.7
1,600,632	+				-1.1
1,600,633	-				-1.3
1,600,633	-				-1.4
1,600,633	-				-1.5
1,600,642	+				-1.8
1,600,642	+				-0.1
1,600,642	+				-1.1
1,600,642	+				+2.2
1,600,642	+				+0.3
1,600,643	-				-0.4
1,600,643	-				+0.3
1,600,643	-				+0.5
1,600,643	-				-1.6
1,600,643	-				+1.5
1,600,643	-				-0.5
1,600,643	-				-1.1
1,600,648	+				+1.1
1,600,657	+				+2.1
1,600,657	+				-2.3
1,600,657	+				+1.0
1,600,658	-				+2.1
1,600,675	+				-0.8
1,600,676	-				+0.3
1,600,700	-				-0.2
1,600,700	-				+0.0
1,600,700	-				-1.8
1,600,734	+				+0.7
1,600,734	+				+0.7
1,600,735	-				+0.0
1,600,735	-				-1.3
1,600,735	-				-0.9
1,600,735	-				+2.3
1,600,735	-				-1.1
1,600,735	-				-1.3
1,600,756	+				+0.6
1,600,757	-				-2.7