Strain Fitness in Escherichia fergusonii Becca around EFB2_00896

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_00894 and EFB2_00895 are separated by 54 nucleotidesEFB2_00895 and EFB2_00896 are separated by 365 nucleotidesEFB2_00896 and EFB2_00897 are separated by 1 nucleotides EFB2_00894: EFB2_00894 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 920,507 to 921,307 _00894 EFB2_00895: EFB2_00895 - hypothetical protein, at 921,362 to 921,685 _00895 EFB2_00896: EFB2_00896 - hypothetical protein, at 922,051 to 923,565 _00896 EFB2_00897: EFB2_00897 - Pectate disaccharide-lyase, at 923,567 to 925,801 _00897 Position (kb) 922 923 924Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 921.061 kb on + strand, within EFB2_00894at 921.062 kb on - strand, within EFB2_00894at 921.080 kb on + strand, within EFB2_00894at 921.081 kb on - strand, within EFB2_00894at 921.088 kb on + strand, within EFB2_00894at 921.088 kb on + strand, within EFB2_00894at 921.089 kb on - strand, within EFB2_00894at 921.108 kb on + strand, within EFB2_00894at 921.108 kb on + strand, within EFB2_00894at 921.154 kb on + strand, within EFB2_00894at 921.155 kb on - strand, within EFB2_00894at 921.155 kb on - strand, within EFB2_00894at 921.155 kb on - strand, within EFB2_00894at 921.157 kb on + strand, within EFB2_00894at 921.157 kb on + strand, within EFB2_00894at 921.157 kb on + strand, within EFB2_00894at 921.257 kb on - strandat 921.257 kb on - strandat 921.262 kb on - strandat 921.263 kb on + strandat 921.287 kb on + strandat 921.288 kb on - strandat 921.306 kb on - strandat 921.309 kb on + strandat 921.309 kb on + strandat 921.309 kb on + strandat 921.310 kb on - strandat 921.311 kb on + strandat 921.321 kb on + strandat 921.322 kb on - strandat 921.327 kb on + strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.328 kb on - strandat 921.334 kb on + strandat 921.373 kb on + strandat 921.374 kb on - strandat 921.383 kb on - strandat 921.390 kb on + strandat 921.391 kb on - strandat 921.453 kb on + strand, within EFB2_00895at 921.469 kb on + strand, within EFB2_00895at 921.489 kb on + strand, within EFB2_00895at 921.489 kb on + strand, within EFB2_00895at 921.518 kb on + strand, within EFB2_00895at 921.518 kb on + strand, within EFB2_00895at 921.518 kb on + strand, within EFB2_00895at 921.519 kb on - strand, within EFB2_00895at 921.545 kb on - strand, within EFB2_00895at 921.570 kb on + strand, within EFB2_00895at 921.583 kb on + strand, within EFB2_00895at 921.584 kb on - strand, within EFB2_00895at 921.588 kb on + strand, within EFB2_00895at 921.651 kb on + strand, within EFB2_00895at 921.652 kb on - strand, within EFB2_00895at 921.652 kb on - strand, within EFB2_00895at 921.683 kb on + strandat 921.736 kb on + strandat 921.887 kb on - strandat 921.894 kb on + strandat 921.895 kb on - strandat 921.936 kb on - strandat 921.957 kb on - strandat 921.963 kb on + strandat 921.992 kb on + strandat 921.992 kb on + strandat 921.993 kb on - strandat 921.995 kb on - strandat 922.049 kb on - strandat 922.082 kb on + strandat 922.218 kb on + strand, within EFB2_00896at 922.219 kb on - strand, within EFB2_00896at 922.338 kb on + strand, within EFB2_00896at 922.338 kb on + strand, within EFB2_00896at 922.339 kb on - strand, within EFB2_00896at 922.339 kb on - strand, within EFB2_00896at 922.348 kb on + strand, within EFB2_00896at 922.365 kb on - strand, within EFB2_00896at 922.385 kb on - strand, within EFB2_00896at 922.387 kb on + strand, within EFB2_00896at 922.399 kb on + strand, within EFB2_00896at 922.418 kb on + strand, within EFB2_00896at 922.418 kb on + strand, within EFB2_00896at 922.418 kb on + strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.419 kb on - strand, within EFB2_00896at 922.420 kb on + strand, within EFB2_00896at 922.420 kb on + strand, within EFB2_00896at 922.420 kb on + strand, within EFB2_00896at 922.420 kb on + strand, within EFB2_00896at 922.420 kb on + strand, within EFB2_00896at 922.420 kb on + strand, within EFB2_00896at 922.421 kb on - strand, within EFB2_00896at 922.421 kb on - strand, within EFB2_00896at 922.421 kb on - strand, within EFB2_00896at 922.421 kb on - strand, within EFB2_00896at 922.421 kb on - strand, within EFB2_00896at 922.422 kb on + strand, within EFB2_00896at 922.422 kb on + strand, within EFB2_00896at 922.431 kb on + strand, within EFB2_00896at 922.432 kb on - strand, within EFB2_00896at 922.442 kb on - strand, within EFB2_00896at 922.451 kb on + strand, within EFB2_00896at 922.489 kb on + strand, within EFB2_00896at 922.503 kb on + strand, within EFB2_00896at 922.504 kb on - strand, within EFB2_00896at 922.504 kb on - strand, within EFB2_00896at 922.504 kb on - strand, within EFB2_00896at 922.509 kb on + strand, within EFB2_00896at 922.510 kb on - strand, within EFB2_00896at 922.510 kb on - strand, within EFB2_00896at 922.510 kb on - strand, within EFB2_00896at 922.518 kb on + strand, within EFB2_00896at 922.518 kb on + strand, within EFB2_00896at 922.528 kb on - strand, within EFB2_00896at 922.615 kb on + strand, within EFB2_00896at 922.616 kb on - strand, within EFB2_00896at 922.621 kb on - strand, within EFB2_00896at 922.686 kb on - strand, within EFB2_00896at 922.710 kb on + strand, within EFB2_00896at 922.785 kb on + strand, within EFB2_00896at 922.786 kb on - strand, within EFB2_00896at 922.786 kb on - strand, within EFB2_00896at 922.789 kb on + strand, within EFB2_00896at 922.789 kb on + strand, within EFB2_00896at 922.790 kb on - strand, within EFB2_00896at 922.790 kb on - strand, within EFB2_00896at 922.817 kb on + strand, within EFB2_00896at 922.834 kb on - strand, within EFB2_00896at 922.921 kb on - strand, within EFB2_00896at 922.981 kb on - strand, within EFB2_00896at 923.024 kb on - strand, within EFB2_00896at 923.070 kb on + strand, within EFB2_00896at 923.070 kb on + strand, within EFB2_00896at 923.100 kb on - strand, within EFB2_00896at 923.100 kb on - strand, within EFB2_00896at 923.102 kb on - strand, within EFB2_00896at 923.102 kb on - strand, within EFB2_00896at 923.102 kb on - strand, within EFB2_00896at 923.104 kb on + strand, within EFB2_00896at 923.104 kb on + strand, within EFB2_00896at 923.105 kb on - strand, within EFB2_00896at 923.120 kb on + strand, within EFB2_00896at 923.120 kb on + strand, within EFB2_00896at 923.120 kb on + strand, within EFB2_00896at 923.120 kb on + strand, within EFB2_00896at 923.120 kb on + strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.121 kb on - strand, within EFB2_00896at 923.122 kb on + strand, within EFB2_00896at 923.122 kb on + strand, within EFB2_00896at 923.122 kb on + strand, within EFB2_00896at 923.122 kb on + strand, within EFB2_00896at 923.123 kb on - strand, within EFB2_00896at 923.123 kb on - strand, within EFB2_00896at 923.126 kb on + strand, within EFB2_00896at 923.127 kb on - strand, within EFB2_00896at 923.153 kb on + strand, within EFB2_00896at 923.197 kb on - strand, within EFB2_00896at 923.211 kb on - strand, within EFB2_00896at 923.225 kb on + strand, within EFB2_00896at 923.228 kb on + strand, within EFB2_00896at 923.229 kb on - strand, within EFB2_00896at 923.301 kb on - strand, within EFB2_00896at 923.351 kb on + strand, within EFB2_00896at 923.355 kb on + strand, within EFB2_00896at 923.356 kb on - strand, within EFB2_00896at 923.360 kb on - strand, within EFB2_00896at 923.385 kb on + strand, within EFB2_00896at 923.479 kb on - strandat 923.479 kb on - strandat 923.518 kb on - strandat 923.583 kb on + strandat 923.584 kb on - strandat 923.666 kb on - strandat 923.717 kb on - strandat 923.815 kb on + strand, within EFB2_00897at 923.830 kb on + strand, within EFB2_00897at 923.830 kb on + strand, within EFB2_00897at 923.843 kb on + strand, within EFB2_00897at 923.843 kb on + strand, within EFB2_00897at 923.844 kb on - strand, within EFB2_00897at 923.848 kb on + strand, within EFB2_00897at 923.849 kb on - strand, within EFB2_00897at 923.849 kb on - strand, within EFB2_00897at 923.849 kb on - strand, within EFB2_00897at 923.895 kb on + strand, within EFB2_00897at 923.895 kb on + strand, within EFB2_00897at 923.896 kb on - strand, within EFB2_00897at 923.968 kb on + strand, within EFB2_00897at 923.969 kb on - strand, within EFB2_00897at 923.969 kb on - strand, within EFB2_00897at 924.034 kb on + strand, within EFB2_00897at 924.036 kb on + strand, within EFB2_00897at 924.117 kb on + strand, within EFB2_00897at 924.319 kb on + strand, within EFB2_00897at 924.320 kb on - strand, within EFB2_00897at 924.322 kb on + strand, within EFB2_00897at 924.322 kb on + strand, within EFB2_00897at 924.322 kb on + strand, within EFB2_00897at 924.322 kb on + strand, within EFB2_00897at 924.323 kb on - strand, within EFB2_00897at 924.363 kb on + strand, within EFB2_00897at 924.411 kb on - strand, within EFB2_00897at 924.420 kb on + strand, within EFB2_00897at 924.492 kb on + strand, within EFB2_00897at 924.492 kb on + strand, within EFB2_00897at 924.538 kb on - strand, within EFB2_00897at 924.544 kb on + strand, within EFB2_00897

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
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921,061 + EFB2_00894 0.69 +0.6
921,062 - EFB2_00894 0.69 +0.2
921,080 + EFB2_00894 0.72 -1.7
921,081 - EFB2_00894 0.72 +0.0
921,088 + EFB2_00894 0.73 -1.7
921,088 + EFB2_00894 0.73 +0.7
921,089 - EFB2_00894 0.73 +0.6
921,108 + EFB2_00894 0.75 +1.0
921,108 + EFB2_00894 0.75 +0.8
921,154 + EFB2_00894 0.81 -0.3
921,155 - EFB2_00894 0.81 -1.5
921,155 - EFB2_00894 0.81 +0.0
921,155 - EFB2_00894 0.81 -0.0
921,157 + EFB2_00894 0.81 +0.3
921,157 + EFB2_00894 0.81 +1.3
921,157 + EFB2_00894 0.81 +1.5
921,257 - +0.4
921,257 - +1.1
921,262 - -1.4
921,263 + +0.9
921,287 + +0.9
921,288 - +0.4
921,306 - -3.0
921,309 + +1.1
921,309 + +2.1
921,309 + -1.5
921,310 - +0.2
921,311 + -0.3
921,321 + -1.3
921,322 - -1.3
921,327 + +2.4
921,328 - -1.9
921,328 - +0.5
921,328 - -0.0
921,328 - -0.0
921,328 - +0.5
921,334 + -2.0
921,373 + -0.1
921,374 - +1.5
921,383 - -0.7
921,390 + +1.5
921,391 - -0.6
921,453 + EFB2_00895 0.28 -1.1
921,469 + EFB2_00895 0.33 +1.1
921,489 + EFB2_00895 0.39 -0.6
921,489 + EFB2_00895 0.39 +1.0
921,518 + EFB2_00895 0.48 -0.6
921,518 + EFB2_00895 0.48 -0.4
921,518 + EFB2_00895 0.48 +0.0
921,519 - EFB2_00895 0.48 +0.4
921,545 - EFB2_00895 0.56 -0.0
921,570 + EFB2_00895 0.64 +0.3
921,583 + EFB2_00895 0.68 -1.1
921,584 - EFB2_00895 0.69 +1.8
921,588 + EFB2_00895 0.70 -0.5
921,651 + EFB2_00895 0.89 +0.9
921,652 - EFB2_00895 0.90 +0.0
921,652 - EFB2_00895 0.90 -1.2
921,683 + -0.6
921,736 + +0.0
921,887 - -4.1
921,894 + +1.3
921,895 - -0.2
921,936 - -0.8
921,957 - +0.5
921,963 + -1.7
921,992 + -3.9
921,992 + -1.5
921,993 - +0.6
921,995 - -1.2
922,049 - +0.1
922,082 + +0.9
922,218 + EFB2_00896 0.11 -0.5
922,219 - EFB2_00896 0.11 -2.4
922,338 + EFB2_00896 0.19 +0.2
922,338 + EFB2_00896 0.19 +0.0
922,339 - EFB2_00896 0.19 -1.0
922,339 - EFB2_00896 0.19 -0.6
922,348 + EFB2_00896 0.20 -0.2
922,365 - EFB2_00896 0.21 +1.5
922,385 - EFB2_00896 0.22 -0.4
922,387 + EFB2_00896 0.22 +0.3
922,399 + EFB2_00896 0.23 -1.9
922,418 + EFB2_00896 0.24 -0.2
922,418 + EFB2_00896 0.24 +0.6
922,418 + EFB2_00896 0.24 +0.4
922,419 - EFB2_00896 0.24 +0.8
922,419 - EFB2_00896 0.24 -0.2
922,419 - EFB2_00896 0.24 -3.0
922,419 - EFB2_00896 0.24 -1.1
922,419 - EFB2_00896 0.24 -2.4
922,419 - EFB2_00896 0.24 +0.9
922,419 - EFB2_00896 0.24 +0.3
922,419 - EFB2_00896 0.24 +0.8
922,419 - EFB2_00896 0.24 -0.8
922,419 - EFB2_00896 0.24 -1.7
922,420 + EFB2_00896 0.24 -1.5
922,420 + EFB2_00896 0.24 -2.5
922,420 + EFB2_00896 0.24 -3.2
922,420 + EFB2_00896 0.24 +0.2
922,420 + EFB2_00896 0.24 +2.2
922,420 + EFB2_00896 0.24 -0.4
922,421 - EFB2_00896 0.24 +0.8
922,421 - EFB2_00896 0.24 -0.5
922,421 - EFB2_00896 0.24 -0.4
922,421 - EFB2_00896 0.24 -3.2
922,421 - EFB2_00896 0.24 +2.2
922,422 + EFB2_00896 0.24 -0.0
922,422 + EFB2_00896 0.24 +0.0
922,431 + EFB2_00896 0.25 -0.5
922,432 - EFB2_00896 0.25 -0.1
922,442 - EFB2_00896 0.26 -0.3
922,451 + EFB2_00896 0.26 -2.4
922,489 + EFB2_00896 0.29 -0.3
922,503 + EFB2_00896 0.30 -1.3
922,504 - EFB2_00896 0.30 -0.1
922,504 - EFB2_00896 0.30 +0.2
922,504 - EFB2_00896 0.30 +1.5
922,509 + EFB2_00896 0.30 -0.2
922,510 - EFB2_00896 0.30 -1.2
922,510 - EFB2_00896 0.30 +1.1
922,510 - EFB2_00896 0.30 +1.6
922,518 + EFB2_00896 0.31 +0.0
922,518 + EFB2_00896 0.31 +1.1
922,528 - EFB2_00896 0.31 +0.2
922,615 + EFB2_00896 0.37 +1.7
922,616 - EFB2_00896 0.37 -0.2
922,621 - EFB2_00896 0.38 +0.3
922,686 - EFB2_00896 0.42 +1.1
922,710 + EFB2_00896 0.43 -2.1
922,785 + EFB2_00896 0.48 +0.3
922,786 - EFB2_00896 0.49 -0.8
922,786 - EFB2_00896 0.49 +2.4
922,789 + EFB2_00896 0.49 -1.3
922,789 + EFB2_00896 0.49 -2.6
922,790 - EFB2_00896 0.49 +1.5
922,790 - EFB2_00896 0.49 +1.4
922,817 + EFB2_00896 0.51 -0.0
922,834 - EFB2_00896 0.52 +0.9
922,921 - EFB2_00896 0.57 -2.7
922,981 - EFB2_00896 0.61 -0.5
923,024 - EFB2_00896 0.64 -0.1
923,070 + EFB2_00896 0.67 +0.7
923,070 + EFB2_00896 0.67 +1.3
923,100 - EFB2_00896 0.69 -0.8
923,100 - EFB2_00896 0.69 +0.8
923,102 - EFB2_00896 0.69 -1.4
923,102 - EFB2_00896 0.69 +0.7
923,102 - EFB2_00896 0.69 -0.5
923,104 + EFB2_00896 0.70 -0.0
923,104 + EFB2_00896 0.70 -1.6
923,105 - EFB2_00896 0.70 +0.1
923,120 + EFB2_00896 0.71 -1.0
923,120 + EFB2_00896 0.71 -0.2
923,120 + EFB2_00896 0.71 -0.3
923,120 + EFB2_00896 0.71 +0.3
923,120 + EFB2_00896 0.71 +0.3
923,121 - EFB2_00896 0.71 -1.1
923,121 - EFB2_00896 0.71 +0.1
923,121 - EFB2_00896 0.71 +0.4
923,121 - EFB2_00896 0.71 +0.0
923,121 - EFB2_00896 0.71 +1.2
923,121 - EFB2_00896 0.71 -1.1
923,121 - EFB2_00896 0.71 -0.7
923,121 - EFB2_00896 0.71 +2.4
923,121 - EFB2_00896 0.71 -2.7
923,121 - EFB2_00896 0.71 -2.8
923,121 - EFB2_00896 0.71 -2.5
923,121 - EFB2_00896 0.71 +1.0
923,121 - EFB2_00896 0.71 -0.2
923,121 - EFB2_00896 0.71 -1.6
923,122 + EFB2_00896 0.71 -3.6
923,122 + EFB2_00896 0.71 -0.4
923,122 + EFB2_00896 0.71 -0.3
923,122 + EFB2_00896 0.71 +0.5
923,123 - EFB2_00896 0.71 -0.5
923,123 - EFB2_00896 0.71 -0.2
923,126 + EFB2_00896 0.71 -2.8
923,127 - EFB2_00896 0.71 -0.8
923,153 + EFB2_00896 0.73 -0.8
923,197 - EFB2_00896 0.76 +0.4
923,211 - EFB2_00896 0.77 +0.0
923,225 + EFB2_00896 0.77 -0.5
923,228 + EFB2_00896 0.78 -0.3
923,229 - EFB2_00896 0.78 -1.2
923,301 - EFB2_00896 0.83 -2.1
923,351 + EFB2_00896 0.86 +0.6
923,355 + EFB2_00896 0.86 +0.9
923,356 - EFB2_00896 0.86 +1.2
923,360 - EFB2_00896 0.86 -0.0
923,385 + EFB2_00896 0.88 +0.2
923,479 - -1.4
923,479 - +0.8
923,518 - +2.7
923,583 + -0.2
923,584 - -1.4
923,666 - +0.3
923,717 - -1.9
923,815 + EFB2_00897 0.11 +0.8
923,830 + EFB2_00897 0.12 -2.4
923,830 + EFB2_00897 0.12 -1.3
923,843 + EFB2_00897 0.12 +1.0
923,843 + EFB2_00897 0.12 -1.9
923,844 - EFB2_00897 0.12 -2.4
923,848 + EFB2_00897 0.13 -1.2
923,849 - EFB2_00897 0.13 -0.8
923,849 - EFB2_00897 0.13 +0.6
923,849 - EFB2_00897 0.13 -0.6
923,895 + EFB2_00897 0.15 -0.6
923,895 + EFB2_00897 0.15 +0.2
923,896 - EFB2_00897 0.15 -2.1
923,968 + EFB2_00897 0.18 +0.9
923,969 - EFB2_00897 0.18 -0.3
923,969 - EFB2_00897 0.18 -0.5
924,034 + EFB2_00897 0.21 -0.2
924,036 + EFB2_00897 0.21 +1.1
924,117 + EFB2_00897 0.25 +1.5
924,319 + EFB2_00897 0.34 -0.3
924,320 - EFB2_00897 0.34 -2.5
924,322 + EFB2_00897 0.34 +0.4
924,322 + EFB2_00897 0.34 -0.3
924,322 + EFB2_00897 0.34 -0.0
924,322 + EFB2_00897 0.34 -0.3
924,323 - EFB2_00897 0.34 -0.1
924,363 + EFB2_00897 0.36 -0.1
924,411 - EFB2_00897 0.38 -0.8
924,420 + EFB2_00897 0.38 +1.6
924,492 + EFB2_00897 0.41 +0.0
924,492 + EFB2_00897 0.41 -0.5
924,538 - EFB2_00897 0.43 +0.1
924,544 + EFB2_00897 0.44 +1.0

Or see this region's nucleotide sequence