Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00987

Experiment: mer MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00985 and OHPLBJKB_00986 are separated by 18 nucleotidesOHPLBJKB_00986 and OHPLBJKB_00987 overlap by 1 nucleotidesOHPLBJKB_00987 and OHPLBJKB_00988 overlap by 4 nucleotides OHPLBJKB_00985: OHPLBJKB_00985 - Cell division protein FtsB, at 1,020,662 to 1,020,973 _00985 OHPLBJKB_00986: OHPLBJKB_00986 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,020,992 to 1,021,702 _00986 OHPLBJKB_00987: OHPLBJKB_00987 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,021,702 to 1,022,181 _00987 OHPLBJKB_00988: OHPLBJKB_00988 - tRNA pseudouridine synthase D, at 1,022,178 to 1,023,227 _00988 Position (kb) 1021 1022 1023Strain fitness (log2 ratio) -2 -1 0 1at 1021.696 kb on + strandat 1021.696 kb on + strandat 1021.696 kb on + strandat 1021.696 kb on + strandat 1021.696 kb on + strandat 1021.696 kb on + strandat 1021.696 kb on + strandat 1021.696 kb on + strandat 1022.203 kb on - strandat 1022.203 kb on - strandat 1022.306 kb on + strand, within OHPLBJKB_00988at 1022.306 kb on + strand, within OHPLBJKB_00988at 1022.306 kb on + strand, within OHPLBJKB_00988at 1022.307 kb on - strand, within OHPLBJKB_00988at 1022.307 kb on - strand, within OHPLBJKB_00988at 1022.316 kb on - strand, within OHPLBJKB_00988at 1022.444 kb on - strand, within OHPLBJKB_00988at 1022.517 kb on + strand, within OHPLBJKB_00988at 1022.517 kb on + strand, within OHPLBJKB_00988at 1022.518 kb on - strand, within OHPLBJKB_00988at 1022.518 kb on - strand, within OHPLBJKB_00988at 1022.562 kb on - strand, within OHPLBJKB_00988at 1022.627 kb on + strand, within OHPLBJKB_00988at 1022.627 kb on + strand, within OHPLBJKB_00988at 1022.635 kb on + strand, within OHPLBJKB_00988at 1022.644 kb on + strand, within OHPLBJKB_00988at 1022.723 kb on + strand, within OHPLBJKB_00988at 1022.724 kb on - strand, within OHPLBJKB_00988at 1022.724 kb on - strand, within OHPLBJKB_00988at 1022.858 kb on - strand, within OHPLBJKB_00988at 1022.870 kb on + strand, within OHPLBJKB_00988at 1023.032 kb on - strand, within OHPLBJKB_00988at 1023.032 kb on - strand, within OHPLBJKB_00988at 1023.032 kb on - strand, within OHPLBJKB_00988at 1023.040 kb on + strand, within OHPLBJKB_00988at 1023.040 kb on + strand, within OHPLBJKB_00988at 1023.041 kb on - strand, within OHPLBJKB_00988at 1023.088 kb on - strand, within OHPLBJKB_00988at 1023.088 kb on - strand, within OHPLBJKB_00988at 1023.100 kb on + strand, within OHPLBJKB_00988at 1023.100 kb on + strand, within OHPLBJKB_00988at 1023.101 kb on - strand, within OHPLBJKB_00988at 1023.101 kb on - strand, within OHPLBJKB_00988at 1023.101 kb on - strand, within OHPLBJKB_00988at 1023.101 kb on - strand, within OHPLBJKB_00988at 1023.101 kb on - strand, within OHPLBJKB_00988at 1023.130 kb on + strandat 1023.130 kb on + strandat 1023.130 kb on + strandat 1023.131 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI1
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1,021,696 + -0.6
1,021,696 + -2.0
1,021,696 + -1.9
1,021,696 + -0.1
1,021,696 + -1.2
1,021,696 + -2.4
1,021,696 + -1.7
1,021,696 + -2.4
1,022,203 - +1.1
1,022,203 - -0.4
1,022,306 + OHPLBJKB_00988 0.12 -0.4
1,022,306 + OHPLBJKB_00988 0.12 +0.7
1,022,306 + OHPLBJKB_00988 0.12 +0.3
1,022,307 - OHPLBJKB_00988 0.12 +1.6
1,022,307 - OHPLBJKB_00988 0.12 -1.9
1,022,316 - OHPLBJKB_00988 0.13 -1.7
1,022,444 - OHPLBJKB_00988 0.25 -1.1
1,022,517 + OHPLBJKB_00988 0.32 -0.5
1,022,517 + OHPLBJKB_00988 0.32 +0.2
1,022,518 - OHPLBJKB_00988 0.32 -0.0
1,022,518 - OHPLBJKB_00988 0.32 +0.4
1,022,562 - OHPLBJKB_00988 0.37 -1.1
1,022,627 + OHPLBJKB_00988 0.43 -0.1
1,022,627 + OHPLBJKB_00988 0.43 +1.0
1,022,635 + OHPLBJKB_00988 0.44 -0.7
1,022,644 + OHPLBJKB_00988 0.44 +0.4
1,022,723 + OHPLBJKB_00988 0.52 -0.2
1,022,724 - OHPLBJKB_00988 0.52 -0.7
1,022,724 - OHPLBJKB_00988 0.52 +0.8
1,022,858 - OHPLBJKB_00988 0.65 -0.0
1,022,870 + OHPLBJKB_00988 0.66 +0.4
1,023,032 - OHPLBJKB_00988 0.81 +0.1
1,023,032 - OHPLBJKB_00988 0.81 -0.1
1,023,032 - OHPLBJKB_00988 0.81 +0.3
1,023,040 + OHPLBJKB_00988 0.82 +0.3
1,023,040 + OHPLBJKB_00988 0.82 +1.0
1,023,041 - OHPLBJKB_00988 0.82 +0.2
1,023,088 - OHPLBJKB_00988 0.87 -1.0
1,023,088 - OHPLBJKB_00988 0.87 -0.2
1,023,100 + OHPLBJKB_00988 0.88 -0.5
1,023,100 + OHPLBJKB_00988 0.88 -0.7
1,023,101 - OHPLBJKB_00988 0.88 +0.3
1,023,101 - OHPLBJKB_00988 0.88 -1.4
1,023,101 - OHPLBJKB_00988 0.88 +0.3
1,023,101 - OHPLBJKB_00988 0.88 +0.2
1,023,101 - OHPLBJKB_00988 0.88 +0.4
1,023,130 + +0.4
1,023,130 + +0.4
1,023,130 + +0.4
1,023,131 - -1.1

Or see this region's nucleotide sequence