Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00565

Experiment: mer MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00564 and OHPLBJKB_00565 are separated by 12 nucleotidesOHPLBJKB_00565 and OHPLBJKB_00566 are separated by 350 nucleotides OHPLBJKB_00564: OHPLBJKB_00564 - D-tagatose-1,6-bisphosphate aldolase subunit KbaY, at 575,973 to 576,833 _00564 OHPLBJKB_00565: OHPLBJKB_00565 - Putative D-galactosamine-6-phosphate deaminase AgaS, at 576,846 to 578,000 _00565 OHPLBJKB_00566: OHPLBJKB_00566 - N-acetylgalactosamine-6-phosphate deacetylase, at 578,351 to 579,484 _00566 Position (kb) 576 577 578 579Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 575.943 kb on - strandat 576.056 kb on + strandat 576.058 kb on + strandat 576.058 kb on + strandat 576.059 kb on - strand, within OHPLBJKB_00564at 576.123 kb on + strand, within OHPLBJKB_00564at 576.286 kb on + strand, within OHPLBJKB_00564at 576.287 kb on - strand, within OHPLBJKB_00564at 576.287 kb on - strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.288 kb on + strand, within OHPLBJKB_00564at 576.289 kb on - strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.616 kb on + strand, within OHPLBJKB_00564at 576.617 kb on - strand, within OHPLBJKB_00564at 576.617 kb on - strand, within OHPLBJKB_00564at 576.617 kb on - strand, within OHPLBJKB_00564at 576.629 kb on - strand, within OHPLBJKB_00564at 576.636 kb on - strand, within OHPLBJKB_00564at 576.646 kb on + strand, within OHPLBJKB_00564at 576.646 kb on + strand, within OHPLBJKB_00564at 576.646 kb on + strand, within OHPLBJKB_00564at 576.647 kb on - strand, within OHPLBJKB_00564at 576.647 kb on - strand, within OHPLBJKB_00564at 576.764 kb on + strandat 576.811 kb on + strandat 576.811 kb on + strandat 576.811 kb on + strandat 576.812 kb on - strandat 576.812 kb on - strandat 576.815 kb on + strandat 576.825 kb on - strandat 576.833 kb on + strandat 576.833 kb on + strandat 576.834 kb on - strandat 576.847 kb on + strandat 576.848 kb on - strandat 576.848 kb on - strandat 576.870 kb on + strandat 576.871 kb on - strandat 576.923 kb on + strandat 576.967 kb on + strand, within OHPLBJKB_00565at 576.968 kb on - strand, within OHPLBJKB_00565at 576.968 kb on - strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.028 kb on + strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.029 kb on - strand, within OHPLBJKB_00565at 577.129 kb on + strand, within OHPLBJKB_00565at 577.130 kb on - strand, within OHPLBJKB_00565at 577.130 kb on - strand, within OHPLBJKB_00565at 577.141 kb on + strand, within OHPLBJKB_00565at 577.161 kb on + strand, within OHPLBJKB_00565at 577.161 kb on + strand, within OHPLBJKB_00565at 577.162 kb on - strand, within OHPLBJKB_00565at 577.162 kb on - strand, within OHPLBJKB_00565at 577.229 kb on - strand, within OHPLBJKB_00565at 577.229 kb on - strand, within OHPLBJKB_00565at 577.296 kb on + strand, within OHPLBJKB_00565at 577.297 kb on - strand, within OHPLBJKB_00565at 577.708 kb on + strand, within OHPLBJKB_00565at 577.767 kb on - strand, within OHPLBJKB_00565at 577.857 kb on + strand, within OHPLBJKB_00565at 577.874 kb on + strand, within OHPLBJKB_00565at 577.875 kb on - strand, within OHPLBJKB_00565at 577.890 kb on + strandat 577.961 kb on + strandat 578.001 kb on - strandat 578.209 kb on - strandat 578.240 kb on + strandat 578.240 kb on + strandat 578.240 kb on + strandat 578.240 kb on + strandat 578.240 kb on + strandat 578.241 kb on - strandat 578.241 kb on - strandat 578.241 kb on - strandat 578.241 kb on - strandat 578.363 kb on + strandat 578.363 kb on + strandat 578.497 kb on + strand, within OHPLBJKB_00566at 578.570 kb on - strand, within OHPLBJKB_00566at 578.636 kb on + strand, within OHPLBJKB_00566at 578.637 kb on - strand, within OHPLBJKB_00566at 578.637 kb on - strand, within OHPLBJKB_00566at 578.637 kb on - strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.641 kb on + strand, within OHPLBJKB_00566at 578.642 kb on - strand, within OHPLBJKB_00566at 578.642 kb on - strand, within OHPLBJKB_00566at 578.642 kb on - strand, within OHPLBJKB_00566at 578.642 kb on - strand, within OHPLBJKB_00566at 578.825 kb on + strand, within OHPLBJKB_00566at 578.825 kb on + strand, within OHPLBJKB_00566at 578.826 kb on - strand, within OHPLBJKB_00566at 578.826 kb on - strand, within OHPLBJKB_00566at 578.826 kb on - strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.844 kb on + strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.845 kb on - strand, within OHPLBJKB_00566at 578.931 kb on - strand, within OHPLBJKB_00566at 578.944 kb on + strand, within OHPLBJKB_00566at 578.944 kb on + strand, within OHPLBJKB_00566

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI1
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575,943 - +0.4
576,056 + -0.6
576,058 + +0.1
576,058 + -1.8
576,059 - OHPLBJKB_00564 0.10 +0.2
576,123 + OHPLBJKB_00564 0.17 -2.3
576,286 + OHPLBJKB_00564 0.36 +0.1
576,287 - OHPLBJKB_00564 0.36 -1.4
576,287 - OHPLBJKB_00564 0.36 +0.2
576,288 + OHPLBJKB_00564 0.37 -0.2
576,288 + OHPLBJKB_00564 0.37 +0.6
576,288 + OHPLBJKB_00564 0.37 +0.3
576,288 + OHPLBJKB_00564 0.37 +0.3
576,289 - OHPLBJKB_00564 0.37 -2.0
576,616 + OHPLBJKB_00564 0.75 +0.1
576,616 + OHPLBJKB_00564 0.75 -0.2
576,616 + OHPLBJKB_00564 0.75 -0.5
576,616 + OHPLBJKB_00564 0.75 +1.0
576,616 + OHPLBJKB_00564 0.75 +0.1
576,616 + OHPLBJKB_00564 0.75 +0.0
576,616 + OHPLBJKB_00564 0.75 -0.8
576,617 - OHPLBJKB_00564 0.75 -0.9
576,617 - OHPLBJKB_00564 0.75 -1.1
576,617 - OHPLBJKB_00564 0.75 +0.8
576,629 - OHPLBJKB_00564 0.76 +1.0
576,636 - OHPLBJKB_00564 0.77 +0.1
576,646 + OHPLBJKB_00564 0.78 -0.7
576,646 + OHPLBJKB_00564 0.78 +0.0
576,646 + OHPLBJKB_00564 0.78 -0.1
576,647 - OHPLBJKB_00564 0.78 -0.6
576,647 - OHPLBJKB_00564 0.78 -1.4
576,764 + -0.3
576,811 + +0.9
576,811 + -3.1
576,811 + -0.6
576,812 - -0.5
576,812 - -0.1
576,815 + +0.7
576,825 - -0.2
576,833 + -0.6
576,833 + -0.9
576,834 - -0.6
576,847 + +1.6
576,848 - +0.0
576,848 - +1.3
576,870 + +0.8
576,871 - +0.3
576,923 + +1.0
576,967 + OHPLBJKB_00565 0.10 +0.4
576,968 - OHPLBJKB_00565 0.11 -1.2
576,968 - OHPLBJKB_00565 0.11 -0.0
577,028 + OHPLBJKB_00565 0.16 +1.6
577,028 + OHPLBJKB_00565 0.16 +0.2
577,028 + OHPLBJKB_00565 0.16 -0.3
577,028 + OHPLBJKB_00565 0.16 +0.4
577,028 + OHPLBJKB_00565 0.16 -1.6
577,028 + OHPLBJKB_00565 0.16 -0.1
577,028 + OHPLBJKB_00565 0.16 +0.9
577,029 - OHPLBJKB_00565 0.16 -2.8
577,029 - OHPLBJKB_00565 0.16 -0.5
577,029 - OHPLBJKB_00565 0.16 -0.6
577,029 - OHPLBJKB_00565 0.16 +0.3
577,029 - OHPLBJKB_00565 0.16 -1.0
577,029 - OHPLBJKB_00565 0.16 -1.2
577,029 - OHPLBJKB_00565 0.16 +0.6
577,129 + OHPLBJKB_00565 0.25 -2.3
577,130 - OHPLBJKB_00565 0.25 +0.1
577,130 - OHPLBJKB_00565 0.25 -1.0
577,141 + OHPLBJKB_00565 0.26 -0.7
577,161 + OHPLBJKB_00565 0.27 +0.7
577,161 + OHPLBJKB_00565 0.27 -0.0
577,162 - OHPLBJKB_00565 0.27 +0.7
577,162 - OHPLBJKB_00565 0.27 +0.1
577,229 - OHPLBJKB_00565 0.33 +0.7
577,229 - OHPLBJKB_00565 0.33 +0.2
577,296 + OHPLBJKB_00565 0.39 +4.6
577,297 - OHPLBJKB_00565 0.39 +0.2
577,708 + OHPLBJKB_00565 0.75 +0.0
577,767 - OHPLBJKB_00565 0.80 +0.2
577,857 + OHPLBJKB_00565 0.88 -1.4
577,874 + OHPLBJKB_00565 0.89 +0.1
577,875 - OHPLBJKB_00565 0.89 +0.6
577,890 + -0.4
577,961 + +0.0
578,001 - -0.5
578,209 - +0.4
578,240 + -0.8
578,240 + +0.0
578,240 + -0.6
578,240 + +0.1
578,240 + -0.8
578,241 - +0.3
578,241 - +0.8
578,241 - -1.0
578,241 - -0.7
578,363 + -0.8
578,363 + -0.7
578,497 + OHPLBJKB_00566 0.13 +0.3
578,570 - OHPLBJKB_00566 0.19 +0.8
578,636 + OHPLBJKB_00566 0.25 +1.1
578,637 - OHPLBJKB_00566 0.25 +0.2
578,637 - OHPLBJKB_00566 0.25 +5.0
578,637 - OHPLBJKB_00566 0.25 +0.0
578,641 + OHPLBJKB_00566 0.26 +0.4
578,641 + OHPLBJKB_00566 0.26 -0.5
578,641 + OHPLBJKB_00566 0.26 -0.9
578,641 + OHPLBJKB_00566 0.26 +0.3
578,641 + OHPLBJKB_00566 0.26 -0.8
578,642 - OHPLBJKB_00566 0.26 -0.4
578,642 - OHPLBJKB_00566 0.26 +0.8
578,642 - OHPLBJKB_00566 0.26 +1.1
578,642 - OHPLBJKB_00566 0.26 -0.2
578,825 + OHPLBJKB_00566 0.42 -0.5
578,825 + OHPLBJKB_00566 0.42 +0.2
578,826 - OHPLBJKB_00566 0.42 -0.3
578,826 - OHPLBJKB_00566 0.42 -0.5
578,826 - OHPLBJKB_00566 0.42 -0.2
578,844 + OHPLBJKB_00566 0.43 -0.2
578,844 + OHPLBJKB_00566 0.43 -0.2
578,844 + OHPLBJKB_00566 0.43 +0.4
578,844 + OHPLBJKB_00566 0.43 -0.2
578,844 + OHPLBJKB_00566 0.43 -2.4
578,844 + OHPLBJKB_00566 0.43 -0.2
578,845 - OHPLBJKB_00566 0.44 +0.5
578,845 - OHPLBJKB_00566 0.44 -1.1
578,845 - OHPLBJKB_00566 0.44 +0.5
578,845 - OHPLBJKB_00566 0.44 +0.3
578,845 - OHPLBJKB_00566 0.44 +0.2
578,931 - OHPLBJKB_00566 0.51 +0.0
578,944 + OHPLBJKB_00566 0.52 -0.2
578,944 + OHPLBJKB_00566 0.52 -1.0

Or see this region's nucleotide sequence